data_BM3 # _chem_comp.id BM3 _chem_comp.name 2-acetamido-2-deoxy-alpha-D-mannopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H15 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N-acetyl-alpha-D-mannosamine; 2-acetamido-2-deoxy-alpha-D-mannose; 2-acetamido-2-deoxy-D-mannose; 2-acetamido-2-deoxy-mannose; 2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-08-03 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 221.208 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BM3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2J0G _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BM3 N-acetyl-alpha-D-mannosamine PDB ? 2 BM3 2-acetamido-2-deoxy-alpha-D-mannose PDB ? 3 BM3 2-acetamido-2-deoxy-D-mannose PDB ? 4 BM3 2-acetamido-2-deoxy-mannose PDB ? 5 BM3 "2-(ACETYLAMINO)-2-DEOXY-ALPHA-D-MANNOPYRANOSE" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BM3 C1 C1 C 0 1 N N S 71.566 23.405 -2.298 2.237 0.096 -1.738 C1 BM3 1 BM3 O1 O1 O 0 1 N Y N 72.309 24.387 -3.047 1.155 -0.456 -2.483 O1 BM3 2 BM3 C2 C2 C 0 1 N N S 71.895 22.986 -0.951 2.117 -0.329 -0.272 C2 BM3 3 BM3 N2 N2 N 0 1 N N N 71.111 22.152 -0.145 3.364 -0.076 0.421 N2 BM3 4 BM3 C7 C7 C 0 1 N N N 70.473 22.483 1.013 4.390 -0.998 0.485 C7 BM3 5 BM3 O7 O7 O 0 1 N N N 70.978 22.398 2.132 4.397 -2.117 -0.012 O7 BM3 6 BM3 C8 C8 C 0 1 N N N 69.050 22.925 0.940 5.582 -0.524 1.249 C8 BM3 7 BM3 C3 C3 C 0 1 N N R 73.380 22.685 -1.108 0.944 0.386 0.406 C3 BM3 8 BM3 O3 O3 O 0 1 N N N 74.039 22.153 0.075 0.936 0.084 1.799 O3 BM3 9 BM3 C4 C4 C 0 1 N N S 73.389 21.541 -2.244 1.011 1.898 0.186 C4 BM3 10 BM3 O4 O4 O 0 1 N N N 74.702 21.014 -2.542 -0.199 2.470 0.678 O4 BM3 11 BM3 C5 C5 C 0 1 N N R 72.548 21.834 -3.550 1.177 2.209 -1.307 C5 BM3 12 BM3 C6 C6 C 0 1 N N N 72.385 20.471 -4.296 1.397 3.698 -1.560 C6 BM3 13 BM3 O6 O6 O 0 1 N N N 73.327 20.672 -5.758 1.551 3.900 -2.953 O6 BM3 14 BM3 O5 O5 O 0 1 N N N 71.199 22.310 -3.093 2.306 1.521 -1.853 O5 BM3 15 BM3 H1 H1 H 0 1 N N N 70.588 23.920 -2.148 3.158 -0.304 -2.174 H1 BM3 16 BM3 HO1 HA H 0 1 N Y N 72.093 24.662 -3.930 1.505 -0.670 -3.363 HO1 BM3 17 BM3 H2 H2 H 0 1 N N N 71.896 23.947 -0.386 1.960 -1.412 -0.201 H2 BM3 18 BM3 HN2 HB H 0 1 N N N 71.005 21.188 -0.460 3.489 0.820 0.880 HN2 BM3 19 BM3 H3 H3 H 0 1 N N N 73.918 23.591 -1.472 -0.003 0.003 0.005 H3 BM3 20 BM3 H81 H8C1 H 0 1 N N N 68.528 23.196 1.887 5.816 -1.173 2.108 H81 BM3 21 BM3 H82 H8C2 H 0 1 N N N 68.455 22.146 0.409 6.497 -0.512 0.635 H82 BM3 22 BM3 H83 H8C3 H 0 1 N N N 68.972 23.778 0.227 5.501 0.492 1.667 H83 BM3 23 BM3 HO3 HC H 0 1 N Y N 74.965 21.965 -0.023 0.809 0.926 2.262 HO3 BM3 24 BM3 H4 H4 H 0 1 N N N 72.857 20.685 -1.768 1.835 2.325 0.769 H4 BM3 25 BM3 HO4 HD H 0 1 N Y N 74.707 20.340 -3.211 -0.508 3.089 -0.002 HO4 BM3 26 BM3 H5 H5 H 0 1 N N N 73.050 22.593 -4.195 0.274 1.920 -1.860 H5 BM3 27 BM3 H61 H6C1 H 0 1 N N N 71.326 20.168 -4.471 2.297 4.033 -1.045 H61 BM3 28 BM3 H62 H6C2 H 0 1 N N N 72.666 19.580 -3.688 0.537 4.267 -1.206 H62 BM3 29 BM3 HO6 H6 H 0 1 N Y N 73.228 19.843 -6.212 2.462 3.647 -3.179 HO6 BM3 30 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BM3 C1 O1 SING N N 1 BM3 C1 C2 SING N N 2 BM3 C1 O5 SING N N 3 BM3 C1 H1 SING N N 4 BM3 O1 HO1 SING N N 5 BM3 C2 N2 SING N N 6 BM3 C2 C3 SING N N 7 BM3 C2 H2 SING N N 8 BM3 N2 C7 SING N N 9 BM3 N2 HN2 SING N N 10 BM3 C7 O7 DOUB N N 11 BM3 C7 C8 SING N N 12 BM3 C8 H81 SING N N 13 BM3 C8 H82 SING N N 14 BM3 C8 H83 SING N N 15 BM3 C3 O3 SING N N 16 BM3 C3 C4 SING N N 17 BM3 C3 H3 SING N N 18 BM3 O3 HO3 SING N N 19 BM3 C4 O4 SING N N 20 BM3 C4 C5 SING N N 21 BM3 C4 H4 SING N N 22 BM3 O4 HO4 SING N N 23 BM3 C5 C6 SING N N 24 BM3 C5 O5 SING N N 25 BM3 C5 H5 SING N N 26 BM3 C6 O6 SING N N 27 BM3 C6 H61 SING N N 28 BM3 C6 H62 SING N N 29 BM3 O6 HO6 SING N N 30 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BM3 SMILES ACDLabs 10.04 "O=C(NC1C(O)C(O)C(OC1O)CO)C" BM3 SMILES_CANONICAL CACTVS 3.341 "CC(=O)N[C@@H]1[C@@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O" BM3 SMILES CACTVS 3.341 "CC(=O)N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O" BM3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)N[C@H]1[C@H]([C@@H]([C@H](O[C@@H]1O)CO)O)O" BM3 SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)NC1C(C(C(OC1O)CO)O)O" BM3 InChI InChI 1.03 "InChI=1S/C8H15NO6/c1-3(11)9-5-7(13)6(12)4(2-10)15-8(5)14/h4-8,10,12-14H,2H2,1H3,(H,9,11)/t4-,5+,6-,7-,8+/m1/s1" BM3 InChIKey InChI 1.03 OVRNDRQMDRJTHS-UOLFYFMNSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BM3 "SYSTEMATIC NAME" ACDLabs 10.04 "2-(acetylamino)-2-deoxy-alpha-D-mannopyranose" BM3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[(2S,3S,4R,5S,6R)-2,4,5-trihydroxy-6-(hydroxymethyl)oxan-3-yl]ethanamide" BM3 "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DManpNAca BM3 "COMMON NAME" GMML 1.0 N-acetyl-a-D-mannopyranosamine BM3 "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-ManpNAc BM3 "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 ManNAc # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BM3 "CARBOHYDRATE ISOMER" D PDB ? BM3 "CARBOHYDRATE RING" pyranose PDB ? BM3 "CARBOHYDRATE ANOMER" alpha PDB ? BM3 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BM3 "Create component" 2006-08-03 RCSB BM3 "Modify descriptor" 2011-06-04 RCSB BM3 "Other modification" 2019-08-12 RCSB BM3 "Other modification" 2019-12-19 RCSB BM3 "Other modification" 2020-07-03 RCSB BM3 "Modify name" 2020-07-17 RCSB BM3 "Modify synonyms" 2020-07-17 RCSB BM3 "Modify atom id" 2020-07-17 RCSB BM3 "Modify component atom id" 2020-07-17 RCSB ##