data_BM4
#
_chem_comp.id BM4
_chem_comp.name "3-[(3R)-3-ethyl-1-{9-[(3S)-3-ethyl-3-(3-hydroxyphenyl)azepan-1-yl]nonyl}azepan-3-yl]phenol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C37 H58 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-01-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 562.869
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BM4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BM4 OAU OAU O 0 1 N N N 5.897 64.022 63.009 10.578 -4.008 0.132 OAU BM4 1
BM4 CAS CAS C 0 1 Y N N 4.844 64.679 63.585 10.793 -2.670 0.228 CAS BM4 2
BM4 CAQ CAQ C 0 1 Y N N 4.715 66.062 63.430 9.729 -1.786 0.126 CAQ BM4 3
BM4 CAT CAT C 0 1 Y N N 3.902 63.967 64.327 12.077 -2.186 0.434 CAT BM4 4
BM4 CAR CAR C 0 1 Y N N 2.834 64.655 64.896 12.294 -0.825 0.531 CAR BM4 5
BM4 CAP CAP C 0 1 Y N N 2.721 66.040 64.750 11.232 0.054 0.424 CAP BM4 6
BM4 CAO CAO C 0 1 Y N N 3.672 66.768 64.031 9.951 -0.426 0.224 CAO BM4 7
BM4 CAC CAC C 0 1 N N S 3.554 68.313 63.853 8.796 0.535 0.112 CAC BM4 8
BM4 CAM CAM C 0 1 N N N 2.589 68.552 62.690 9.033 1.452 -1.089 CAM BM4 9
BM4 CAN CAN C 0 1 N N N 3.322 68.430 61.334 8.892 0.646 -2.382 CAN BM4 10
BM4 CAB CAB C 0 1 N N N 2.996 69.034 65.107 7.504 -0.268 -0.124 CAB BM4 11
BM4 CAD CAD C 0 1 N N N 4.913 68.923 63.408 8.742 1.376 1.360 CAD BM4 12
BM4 CAE CAE C 0 1 N N N 5.928 69.200 64.527 8.217 2.782 0.993 CAE BM4 13
BM4 CAF CAF C 0 1 N N N 5.393 70.240 65.520 6.771 2.783 0.799 CAF BM4 14
BM4 CAG CAG C 0 1 N N N 4.783 69.570 66.754 6.327 1.865 -0.355 CAG BM4 15
BM4 NAA NAA N 0 1 N N N 3.720 68.637 66.338 6.274 0.510 0.141 NAA BM4 16
BM4 CAH CAH C 0 1 N N N 2.868 68.223 67.475 5.088 -0.191 -0.368 CAH BM4 17
BM4 CAI CAI C 0 1 N N N 3.743 67.401 68.466 3.825 0.510 0.138 CAI BM4 18
BM4 CAJ CAJ C 0 1 N N N 3.057 66.111 68.942 2.589 -0.220 -0.393 CAJ BM4 19
BM4 CAK CAK C 0 1 N N N 4.051 64.985 69.281 1.327 0.481 0.113 CAK BM4 20
BM4 CAL CAL C 0 1 N N N 3.327 63.626 69.455 0.091 -0.249 -0.417 CAL BM4 21
BM4 CAV CAV C 0 1 N N N 2.707 63.457 70.847 -1.171 0.451 0.089 CAV BM4 22
BM4 CAW CAW C 0 1 N N N 1.382 62.686 70.825 -2.407 -0.278 -0.442 CAW BM4 23
BM4 CAX CAX C 0 1 N N N 1.200 61.824 72.092 -3.670 0.422 0.064 CAX BM4 24
BM4 CAY CAY C 0 1 N N N -0.219 61.946 72.680 -4.905 -0.308 -0.466 CAY BM4 25
BM4 NAZ NAZ N 0 1 N N N -0.634 60.686 73.332 -6.117 0.365 0.019 NAZ BM4 26
BM4 HOAU HOAU H 0 0 N N N 5.711 63.870 62.090 10.636 -4.352 -0.770 HOAU BM4 27
BM4 HAQ HAQ H 0 1 N N N 5.438 66.596 62.832 8.729 -2.160 -0.031 HAQ BM4 28
BM4 HAT HAT H 0 1 N N N 3.999 62.899 64.458 12.906 -2.873 0.519 HAT BM4 29
BM4 HAR HAR H 0 1 N N N 2.086 64.113 65.456 13.293 -0.448 0.692 HAR BM4 30
BM4 HAP HAP H 0 1 N N N 1.886 66.556 65.200 11.404 1.118 0.500 HAP BM4 31
BM4 HAM HAM H 0 1 N N N 1.785 67.803 62.732 8.299 2.258 -1.082 HAM BM4 32
BM4 HAMA HAMA H 0 0 N N N 2.175 69.567 62.778 10.036 1.874 -1.032 HAMA BM4 33
BM4 HAN HAN H 0 1 N N N 2.584 68.401 60.519 9.483 -0.267 -2.307 HAN BM4 34
BM4 HANA HANA H 0 0 N N N 3.986 69.296 61.197 7.844 0.389 -2.538 HANA BM4 35
BM4 HANB HANB H 0 0 N N N 3.918 67.506 61.322 9.249 1.241 -3.222 HANB BM4 36
BM4 HAB HAB H 0 1 N N N 3.106 70.120 64.968 7.487 -0.606 -1.160 HAB BM4 37
BM4 HABA HABA H 0 0 N N N 1.939 68.751 65.224 7.512 -1.142 0.526 HABA BM4 38
BM4 HAD HAD H 0 1 N N N 5.379 68.210 62.712 8.071 0.912 2.083 HAD BM4 39
BM4 HADA HADA H 0 0 N N N 4.673 69.904 62.972 9.741 1.459 1.788 HADA BM4 40
BM4 HAE HAE H 0 1 N N N 6.127 68.262 65.067 8.468 3.476 1.796 HAE BM4 41
BM4 HAEA HAEA H 0 0 N N N 6.849 69.594 64.072 8.700 3.113 0.074 HAEA BM4 42
BM4 HAF HAF H 0 1 N N N 6.224 70.886 65.840 6.292 2.449 1.719 HAF BM4 43
BM4 HAFA HAFA H 0 0 N N N 4.609 70.827 65.020 6.446 3.801 0.584 HAFA BM4 44
BM4 HAG HAG H 0 1 N N N 5.565 69.016 67.293 5.341 2.167 -0.706 HAG BM4 45
BM4 HAGA HAGA H 0 0 N N N 4.355 70.340 67.413 7.045 1.930 -1.173 HAGA BM4 46
BM4 HAH HAH H 0 1 N N N 2.463 69.111 67.982 5.098 -0.178 -1.458 HAH BM4 47
BM4 HAHA HAHA H 0 0 N N N 2.027 67.612 67.115 5.096 -1.222 -0.016 HAHA BM4 48
BM4 HAI HAI H 0 1 N N N 4.679 67.128 67.957 3.815 0.498 1.228 HAI BM4 49
BM4 HAIA HAIA H 0 0 N N N 3.920 68.029 69.352 3.816 1.542 -0.214 HAIA BM4 50
BM4 HAJ HAJ H 0 1 N N N 2.477 66.343 69.848 2.600 -0.207 -1.482 HAJ BM4 51
BM4 HAJA HAJA H 0 0 N N N 2.422 65.753 68.118 2.598 -1.252 -0.041 HAJA BM4 52
BM4 HAK HAK H 0 1 N N N 4.780 64.897 68.462 1.316 0.468 1.203 HAK BM4 53
BM4 HAKA HAKA H 0 0 N N N 4.551 65.236 70.228 1.318 1.513 -0.238 HAKA BM4 54
BM4 HAL HAL H 0 1 N N N 2.523 63.563 68.707 0.102 -0.237 -1.507 HAL BM4 55
BM4 HALA HALA H 0 0 N N N 4.076 62.831 69.325 0.100 -1.281 -0.065 HALA BM4 56
BM4 HAV HAV H 0 1 N N N 3.418 62.903 71.477 -1.182 0.439 1.179 HAV BM4 57
BM4 HAVA HAVA H 0 0 N N N 2.497 64.463 71.239 -1.180 1.483 -0.263 HAVA BM4 58
BM4 HAW HAW H 0 1 N N N 0.554 63.408 70.768 -2.396 -0.266 -1.532 HAW BM4 59
BM4 HAWA HAWA H 0 0 N N N 1.389 62.016 69.952 -2.398 -1.310 -0.090 HAWA BM4 60
BM4 HAX HAX H 0 1 N N N 1.381 60.771 71.829 -3.680 0.410 1.154 HAX BM4 61
BM4 HAXA HAXA H 0 0 N N N 1.913 62.180 72.850 -3.678 1.454 -0.287 HAXA BM4 62
BM4 HAY HAY H 0 1 N N N -0.228 62.754 73.426 -4.894 -0.295 -1.556 HAY BM4 63
BM4 HAYA HAYA H 0 0 N N N -0.920 62.165 71.861 -4.896 -1.339 -0.115 HAYA BM4 64
BM4 C24 C24 C 0 1 N N N -2.028 61.289 73.203 -6.234 1.689 -0.542 C24 BM4 65
BM4 C25 C25 C 0 1 N N N -3.488 59.653 73.725 -8.154 2.590 0.775 C25 BM4 66
BM4 C26 C26 C 0 1 N N N -0.467 59.132 72.993 -7.314 -0.478 -0.196 C26 BM4 67
BM4 C27 C27 C 0 1 N N R -1.315 58.205 73.317 -8.638 0.278 0.013 C27 BM4 68
BM4 C28 C28 C 0 1 N N N -2.562 58.551 74.090 -8.613 1.182 1.217 C28 BM4 69
BM4 C29 C29 C 0 1 Y N N -0.792 55.911 74.577 -9.472 -2.079 0.123 C29 BM4 70
BM4 C30 C30 C 0 1 Y N N -0.563 57.391 74.219 -9.749 -0.726 0.183 C30 BM4 71
BM4 C31 C31 C 0 1 Y N N 0.741 57.821 73.520 -11.043 -0.293 0.400 C31 BM4 72
BM4 C32 C32 C 0 1 Y N N 1.815 56.771 73.181 -12.065 -1.218 0.556 C32 BM4 73
BM4 C33 C33 C 0 1 Y N N 1.586 55.292 73.539 -11.785 -2.576 0.495 C33 BM4 74
BM4 C34 C34 C 0 1 Y N N 0.282 54.861 74.237 -10.489 -3.003 0.278 C34 BM4 75
BM4 C35 C35 C 0 1 N N N -2.200 57.102 73.927 -8.926 1.121 -1.231 C35 BM4 76
BM4 O2 O2 O 0 1 N N N 2.328 56.650 71.154 -13.339 -0.795 0.770 O2 BM4 77
BM4 C36 C36 C 0 1 N N N -3.719 57.141 74.178 -8.754 0.258 -2.482 C36 BM4 78
BM4 C37 C37 C 0 1 N N N -3.191 60.942 73.436 -6.711 2.645 0.568 C37 BM4 79
BM4 H39 H39 H 0 1 N N N -1.937 62.173 73.851 -5.264 2.016 -0.916 H39 BM4 80
BM4 H40 H40 H 0 1 N N N -2.099 61.129 72.117 -6.958 1.681 -1.356 H40 BM4 81
BM4 H41 H41 H 0 1 N N N -3.974 59.288 72.808 -8.657 2.852 -0.156 H41 BM4 82
BM4 H42 H42 H 0 1 N N N -3.976 59.801 74.700 -8.431 3.312 1.543 H42 BM4 83
BM4 H43 H43 H 0 1 N N N -0.418 59.091 71.895 -7.290 -0.866 -1.214 H43 BM4 84
BM4 H44 H44 H 0 1 N N N 0.386 58.868 73.635 -7.278 -1.319 0.497 H44 BM4 85
BM4 H45 H45 H 0 1 N N N -2.207 58.804 75.100 -7.918 0.787 1.957 H45 BM4 86
BM4 H46 H46 H 0 1 N N N -3.189 57.667 73.900 -9.613 1.243 1.648 H46 BM4 87
BM4 H47 H47 H 0 1 N N N -1.706 55.609 75.067 -8.460 -2.415 -0.051 H47 BM4 88
BM4 H48 H48 H 0 1 N N N 0.902 58.859 73.268 -11.259 0.764 0.448 H48 BM4 89
BM4 H49 H49 H 0 1 N N N 2.340 54.556 73.301 -12.579 -3.297 0.616 H49 BM4 90
BM4 H50 H50 H 0 1 N N N 0.121 53.823 74.488 -10.271 -4.059 0.229 H50 BM4 91
BM4 H51 H51 H 0 1 N N N -2.070 56.253 73.240 -9.948 1.497 -1.186 H51 BM4 92
BM4 H52 H52 H 0 1 N N N -1.844 57.139 74.967 -8.231 1.960 -1.270 H52 BM4 93
BM4 H53 H53 H 0 1 N N N 1.538 56.632 70.627 -13.850 -0.662 -0.040 H53 BM4 94
BM4 H54 H54 H 0 1 N N N -3.912 57.150 75.261 -9.118 0.804 -3.353 H54 BM4 95
BM4 H55 H55 H 0 1 N N N -4.143 58.048 73.722 -7.699 0.020 -2.617 H55 BM4 96
BM4 H56 H56 H 0 1 N N N -4.187 56.252 73.730 -9.323 -0.664 -2.369 H56 BM4 97
BM4 H57 H57 H 0 1 N N N -3.508 61.527 74.312 -6.211 2.380 1.499 H57 BM4 98
BM4 H58 H58 H 0 1 N N N -3.698 61.106 72.474 -6.432 3.664 0.298 H58 BM4 99
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BM4 OAU CAS SING N N 1
BM4 OAU HOAU SING N N 2
BM4 CAS CAQ DOUB Y N 3
BM4 CAS CAT SING Y N 4
BM4 CAQ CAO SING Y N 5
BM4 CAQ HAQ SING N N 6
BM4 CAT CAR DOUB Y N 7
BM4 CAT HAT SING N N 8
BM4 CAR CAP SING Y N 9
BM4 CAR HAR SING N N 10
BM4 CAP CAO DOUB Y N 11
BM4 CAP HAP SING N N 12
BM4 CAO CAC SING N N 13
BM4 CAC CAM SING N N 14
BM4 CAC CAB SING N N 15
BM4 CAC CAD SING N N 16
BM4 CAM CAN SING N N 17
BM4 CAM HAM SING N N 18
BM4 CAM HAMA SING N N 19
BM4 CAN HAN SING N N 20
BM4 CAN HANA SING N N 21
BM4 CAN HANB SING N N 22
BM4 CAB NAA SING N N 23
BM4 CAB HAB SING N N 24
BM4 CAB HABA SING N N 25
BM4 CAD CAE SING N N 26
BM4 CAD HAD SING N N 27
BM4 CAD HADA SING N N 28
BM4 CAE CAF SING N N 29
BM4 CAE HAE SING N N 30
BM4 CAE HAEA SING N N 31
BM4 CAF CAG SING N N 32
BM4 CAF HAF SING N N 33
BM4 CAF HAFA SING N N 34
BM4 CAG NAA SING N N 35
BM4 CAG HAG SING N N 36
BM4 CAG HAGA SING N N 37
BM4 NAA CAH SING N N 38
BM4 CAH CAI SING N N 39
BM4 CAH HAH SING N N 40
BM4 CAH HAHA SING N N 41
BM4 CAI CAJ SING N N 42
BM4 CAI HAI SING N N 43
BM4 CAI HAIA SING N N 44
BM4 CAJ CAK SING N N 45
BM4 CAJ HAJ SING N N 46
BM4 CAJ HAJA SING N N 47
BM4 CAK CAL SING N N 48
BM4 CAK HAK SING N N 49
BM4 CAK HAKA SING N N 50
BM4 CAL CAV SING N N 51
BM4 CAL HAL SING N N 52
BM4 CAL HALA SING N N 53
BM4 CAV CAW SING N N 54
BM4 CAV HAV SING N N 55
BM4 CAV HAVA SING N N 56
BM4 CAW CAX SING N N 57
BM4 CAW HAW SING N N 58
BM4 CAW HAWA SING N N 59
BM4 CAX CAY SING N N 60
BM4 CAX HAX SING N N 61
BM4 CAX HAXA SING N N 62
BM4 CAY NAZ SING N N 63
BM4 CAY HAY SING N N 64
BM4 CAY HAYA SING N N 65
BM4 NAZ C24 SING N N 66
BM4 NAZ C26 SING N N 67
BM4 C26 C27 SING N N 68
BM4 C25 C28 SING N N 69
BM4 C27 C28 SING N N 70
BM4 C29 C30 SING Y N 71
BM4 C30 C31 DOUB Y N 72
BM4 C31 C32 SING Y N 73
BM4 C32 C33 DOUB Y N 74
BM4 C33 C34 SING Y N 75
BM4 C29 C34 DOUB Y N 76
BM4 C30 C27 SING N N 77
BM4 C27 C35 SING N N 78
BM4 C32 O2 SING N N 79
BM4 C35 C36 SING N N 80
BM4 C24 C37 SING N N 81
BM4 C25 C37 SING N N 82
BM4 C24 H39 SING N N 83
BM4 C24 H40 SING N N 84
BM4 C25 H41 SING N N 85
BM4 C25 H42 SING N N 86
BM4 C26 H43 SING N N 87
BM4 C26 H44 SING N N 88
BM4 C28 H45 SING N N 89
BM4 C28 H46 SING N N 90
BM4 C29 H47 SING N N 91
BM4 C31 H48 SING N N 92
BM4 C33 H49 SING N N 93
BM4 C34 H50 SING N N 94
BM4 C35 H51 SING N N 95
BM4 C35 H52 SING N N 96
BM4 O2 H53 SING N N 97
BM4 C36 H54 SING N N 98
BM4 C36 H55 SING N N 99
BM4 C36 H56 SING N N 100
BM4 C37 H57 SING N N 101
BM4 C37 H58 SING N N 102
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BM4 SMILES ACDLabs 10.04 "Oc1cccc(c1)C2(CC)CCCCN(C2)CCCCCCCCCN4CCCCC(c3cccc(O)c3)(CC)C4"
BM4 SMILES_CANONICAL CACTVS 3.352 "CC[C@]1(CCCCN(CCCCCCCCCN2CCCC[C@@](CC)(C2)c3cccc(O)c3)C1)c4cccc(O)c4"
BM4 SMILES CACTVS 3.352 "CC[C]1(CCCCN(CCCCCCCCCN2CCCC[C](CC)(C2)c3cccc(O)c3)C1)c4cccc(O)c4"
BM4 SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "CC[C@]1(CCCC[N@](C1)CCCCCCCCC[N@]2CCCC[C@](C2)(CC)c3cccc(c3)O)c4cccc(c4)O"
BM4 SMILES "OpenEye OEToolkits" 1.6.1 "CCC1(CCCCN(C1)CCCCCCCCCN2CCCCC(C2)(CC)c3cccc(c3)O)c4cccc(c4)O"
BM4 InChI InChI 1.03 "InChI=1S/C37H58N2O2/c1-3-36(32-18-16-20-34(40)28-32)22-10-14-26-38(30-36)24-12-8-6-5-7-9-13-25-39-27-15-11-23-37(4-2,31-39)33-19-17-21-35(41)29-33/h16-21,28-29,40-41H,3-15,22-27,30-31H2,1-2H3/t36-,37+"
BM4 InChIKey InChI 1.03 ZZKZUUMHRSWLQQ-JXLNJXQWSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BM4 "SYSTEMATIC NAME" ACDLabs 10.04 "3-[(3R)-3-ethyl-1-{9-[(3S)-3-ethyl-3-(3-hydroxyphenyl)azepan-1-yl]nonyl}azepan-3-yl]phenol"
BM4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "3-[(1R,3S)-3-ethyl-1-[9-[(1S,3R)-3-ethyl-3-(3-hydroxyphenyl)azepan-1-yl]nonyl]azepan-3-yl]phenol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BM4 "Create component" 2009-01-06 EBI
BM4 "Modify aromatic_flag" 2011-06-04 RCSB
BM4 "Modify descriptor" 2011-06-04 RCSB
#