data_BMA # _chem_comp.id BMA _chem_comp.name beta-D-mannopyranose _chem_comp.type "D-saccharide, beta linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "beta-D-mannose; D-mannose; mannose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BMA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1CF5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BMA beta-D-mannose PDB ? 2 BMA D-mannose PDB ? 3 BMA mannose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BMA C1 C1 C 0 1 N N R N N N 27.913 -0.014 -0.918 -1.442 -0.578 -0.504 C1 BMA 1 BMA C2 C2 C 0 1 N N S N N N 28.289 1.181 -0.018 -0.493 -0.194 -1.642 C2 BMA 2 BMA C3 C3 C 0 1 N N S N N N 29.844 1.264 -0.063 0.945 -0.515 -1.223 C3 BMA 3 BMA C4 C4 C 0 1 N N S N N N 30.565 -0.137 -0.527 1.227 0.168 0.119 C4 BMA 4 BMA C5 C5 C 0 1 N N R N N N 29.687 -1.504 -0.194 0.149 -0.244 1.124 C5 BMA 5 BMA C6 C6 C 0 1 N N N N N N 29.877 -2.207 1.231 0.442 0.405 2.478 C6 BMA 6 BMA O1 O1 O 0 1 N Y N N N N 26.518 -0.013 -1.109 -2.789 -0.311 -0.899 O1 BMA 7 BMA O2 O2 O 0 1 N N N N N N 27.730 1.125 1.374 -0.614 1.202 -1.915 O2 BMA 8 BMA O3 O3 O 0 1 N N N N N N 30.418 1.690 1.173 1.853 -0.027 -2.213 O3 BMA 9 BMA O4 O4 O 0 1 N N N N N N 30.854 -0.128 -1.954 2.510 -0.235 0.601 O4 BMA 10 BMA O5 O5 O 0 1 N N N N N N 28.253 -1.252 -0.293 -1.130 0.181 0.661 O5 BMA 11 BMA O6 O6 O 0 1 N N N N N N 30.472 -3.557 1.147 -0.561 0.018 3.419 O6 BMA 12 BMA H1 H1 H 0 1 N N N N N N 28.466 0.085 -1.880 -1.333 -1.640 -0.284 H1 BMA 13 BMA H2 H2 H 0 1 N N N N N N 27.818 2.114 -0.405 -0.748 -0.763 -2.537 H2 BMA 14 BMA H3 H3 H 0 1 N N N N N N 30.043 2.037 -0.841 1.063 -1.593 -1.118 H3 BMA 15 BMA H4 H4 H 0 1 N N N N N N 31.501 -0.179 0.077 1.211 1.250 -0.011 H4 BMA 16 BMA H5 H5 H 0 1 N N N N N N 30.101 -2.195 -0.964 0.152 -1.328 1.234 H5 BMA 17 BMA H61 H61 H 0 1 N N N N N N 30.469 -1.556 1.916 0.439 1.489 2.369 H61 BMA 18 BMA H62 H62 H 0 1 N N N N N N 28.912 -2.234 1.789 1.418 0.078 2.835 H62 BMA 19 BMA HO1 HO1 H 0 1 N Y N N N N 26.286 -0.749 -1.663 -3.354 -0.570 -0.159 HO1 BMA 20 BMA HO2 HO2 H 0 1 N Y N N N N 27.961 1.861 1.928 -1.534 1.360 -2.167 HO2 BMA 21 BMA HO3 HO3 H 0 1 N Y N N N N 31.366 1.740 1.145 1.630 -0.474 -3.041 HO3 BMA 22 BMA HO4 HO4 H 0 1 N Y N N N N 31.271 -0.938 -2.222 3.157 0.035 -0.064 HO4 BMA 23 BMA HO6 HO6 H 0 1 N Y N N N N 30.584 -3.974 1.992 -0.340 0.447 4.256 HO6 BMA 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BMA C1 C2 SING N N 1 BMA C1 O1 SING N N 2 BMA C1 O5 SING N N 3 BMA C1 H1 SING N N 4 BMA C2 C3 SING N N 5 BMA C2 O2 SING N N 6 BMA C2 H2 SING N N 7 BMA C3 C4 SING N N 8 BMA C3 O3 SING N N 9 BMA C3 H3 SING N N 10 BMA C4 C5 SING N N 11 BMA C4 O4 SING N N 12 BMA C4 H4 SING N N 13 BMA C5 C6 SING N N 14 BMA C5 O5 SING N N 15 BMA C5 H5 SING N N 16 BMA C6 O6 SING N N 17 BMA C6 H61 SING N N 18 BMA C6 H62 SING N N 19 BMA O1 HO1 SING N N 20 BMA O2 HO2 SING N N 21 BMA O3 HO3 SING N N 22 BMA O4 HO4 SING N N 23 BMA O6 HO6 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BMA SMILES ACDLabs 10.04 "OC1C(O)C(OC(O)C1O)CO" BMA SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O" BMA SMILES CACTVS 3.341 "OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O" BMA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O" BMA SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)O)O)O)O" BMA InChI InChI 1.03 "InChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1" BMA InChIKey InChI 1.03 WQZGKKKJIJFFOK-RWOPYEJCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA "SYSTEMATIC NAME" ACDLabs 10.04 beta-D-mannopyranose BMA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4S,5S,6R)-6-(hydroxymethyl)oxane-2,3,4,5-tetrol" BMA "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DManpb BMA "COMMON NAME" GMML 1.0 b-D-mannopyranose BMA "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-D-Manp BMA "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Man # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BMA "CARBOHYDRATE ISOMER" D PDB ? BMA "CARBOHYDRATE RING" pyranose PDB ? BMA "CARBOHYDRATE ANOMER" beta PDB ? BMA "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BMA "Create component" 1999-07-08 RCSB BMA "Modify descriptor" 2011-06-04 RCSB BMA "Other modification" 2019-08-12 RCSB BMA "Other modification" 2019-12-19 RCSB BMA "Other modification" 2020-07-03 RCSB BMA "Modify name" 2020-07-17 RCSB BMA "Modify synonyms" 2020-07-17 RCSB BMA "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 BMA 3FG None Carbohydrate "Amino-acid side chain" "Any position" C1 OD1 ? ? 2 BMA FOD None Carbohydrate "Amino-acid side chain" "Any position" C1 O2 ? ? 3 BMA SER None Carbohydrate "Amino-acid side chain" "Any position" C1 OG ? ? 4 BMA THR None Carbohydrate "Amino-acid side chain" "Any position" C1 OG1 ? ? 5 BMA TRP None Carbohydrate "Amino-acid side chain" "Any position" C1 CD1 ? ? #