data_BMP # _chem_comp.id BMP _chem_comp.name "6-HYDROXYURIDINE-5'-PHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N2 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-01-14 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.181 _chem_comp.one_letter_code N _chem_comp.three_letter_code BMP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DQX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BMP P P P 0 1 N N N 56.924 90.097 91.243 -1.002 0.140 -4.215 P BMP 1 BMP OP1 O1P O 0 1 N N N 56.041 89.354 92.259 -1.706 -1.122 -3.898 OP1 BMP 2 BMP OP2 O2P O 0 1 N N N 56.927 91.598 91.559 -2.046 1.194 -4.839 OP2 BMP 3 BMP OP3 O3P O 0 1 N Y N 56.533 89.796 89.794 0.168 -0.150 -5.280 OP3 BMP 4 BMP "O5'" O5* O 0 1 N N N 58.362 89.519 91.599 -0.364 0.750 -2.869 "O5'" BMP 5 BMP "C5'" C5* C 0 1 N N N 59.514 89.827 90.856 0.548 -0.226 -2.365 "C5'" BMP 6 BMP "C4'" C4* C 0 1 N N R 60.625 88.785 91.045 1.194 0.293 -1.079 "C4'" BMP 7 BMP "O4'" O4* O 0 1 N N N 61.386 88.911 92.238 0.186 0.522 -0.066 "O4'" BMP 8 BMP "C3'" C3* C 0 1 N N S 60.435 87.354 90.560 2.128 -0.773 -0.467 "C3'" BMP 9 BMP "O3'" O3* O 0 1 N N N 61.151 87.189 89.355 3.487 -0.512 -0.823 "O3'" BMP 10 BMP "C2'" C2* C 0 1 N N R 61.059 86.590 91.680 1.929 -0.622 1.057 "C2'" BMP 11 BMP "O2'" O2* O 0 1 N N N 61.602 85.311 91.407 3.160 -0.266 1.689 "O2'" BMP 12 BMP "C1'" C1* C 0 1 N N R 61.903 87.614 92.501 0.898 0.519 1.189 "C1'" BMP 13 BMP N1 N1 N 0 1 N N N 62.082 87.405 93.982 -0.020 0.251 2.298 N1 BMP 14 BMP C2 C2 C 0 1 N N N 60.992 87.461 94.957 -0.781 -0.858 2.283 C2 BMP 15 BMP O2 O2 O 0 1 N N N 59.829 87.706 94.673 -0.697 -1.628 1.346 O2 BMP 16 BMP N3 N3 N 0 1 N N N 61.200 87.220 96.323 -1.632 -1.128 3.289 N3 BMP 17 BMP C4 C4 C 0 1 N N N 62.473 86.898 96.800 -1.741 -0.288 4.337 C4 BMP 18 BMP O4 O4 O 0 1 N N N 62.596 86.731 97.988 -2.514 -0.537 5.246 O4 BMP 19 BMP C5 C5 C 0 1 N N N 63.709 86.860 95.810 -0.957 0.878 4.375 C5 BMP 20 BMP C6 C6 C 0 1 N N N 63.481 87.106 94.484 -0.095 1.130 3.349 C6 BMP 21 BMP O1 O1 O 0 1 N N N 64.554 87.024 93.708 0.669 2.243 3.361 O1 BMP 22 BMP HOP2 2HOP H 0 0 N N N 57.472 92.057 90.931 -2.405 0.790 -5.642 HOP2 BMP 23 BMP HOP3 3HOP H 0 0 N N N 57.078 90.255 89.166 0.600 0.695 -5.459 HOP3 BMP 24 BMP "H5'" 1H5* H 0 1 N N N 59.271 89.965 89.776 1.322 -0.418 -3.108 "H5'" BMP 25 BMP "H5''" 2H5* H 0 0 N N N 59.881 90.853 91.089 0.011 -1.151 -2.153 "H5''" BMP 26 BMP "H4'" H4* H 0 1 N N N 61.277 89.143 90.215 1.747 1.211 -1.277 "H4'" BMP 27 BMP "H3'" H3* H 0 1 N N N 59.385 87.043 90.345 1.834 -1.771 -0.794 "H3'" BMP 28 BMP "HO3'" *HO3 H 0 0 N Y N 61.032 86.296 89.052 4.025 -1.189 -0.390 "HO3'" BMP 29 BMP "H2'" H2* H 0 1 N N N 60.261 86.172 92.337 1.534 -1.544 1.483 "H2'" BMP 30 BMP "HO2'" *HO2 H 0 0 N N N 61.999 84.824 92.119 3.780 -0.989 1.521 "HO2'" BMP 31 BMP "H1'" H1* H 0 1 N N N 62.946 87.457 92.140 1.405 1.472 1.340 "H1'" BMP 32 BMP HN3 HN3 H 0 1 N N N 60.418 87.279 96.975 -2.172 -1.933 3.259 HN3 BMP 33 BMP H51 1H5 H 0 1 N N N 64.765 86.655 96.052 -1.032 1.562 5.207 H51 BMP 34 BMP HO1 HO1 H 0 1 N N N 65.430 86.836 94.022 0.456 2.720 4.174 HO1 BMP 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BMP P OP1 DOUB N N 1 BMP P OP2 SING N N 2 BMP P OP3 SING N N 3 BMP P "O5'" SING N N 4 BMP OP2 HOP2 SING N N 5 BMP OP3 HOP3 SING N N 6 BMP "O5'" "C5'" SING N N 7 BMP "C5'" "C4'" SING N N 8 BMP "C5'" "H5'" SING N N 9 BMP "C5'" "H5''" SING N N 10 BMP "C4'" "O4'" SING N N 11 BMP "C4'" "C3'" SING N N 12 BMP "C4'" "H4'" SING N N 13 BMP "O4'" "C1'" SING N N 14 BMP "C3'" "O3'" SING N N 15 BMP "C3'" "C2'" SING N N 16 BMP "C3'" "H3'" SING N N 17 BMP "O3'" "HO3'" SING N N 18 BMP "C2'" "O2'" SING N N 19 BMP "C2'" "C1'" SING N N 20 BMP "C2'" "H2'" SING N N 21 BMP "O2'" "HO2'" SING N N 22 BMP "C1'" N1 SING N N 23 BMP "C1'" "H1'" SING N N 24 BMP N1 C2 SING N N 25 BMP N1 C6 SING N N 26 BMP C2 O2 DOUB N N 27 BMP C2 N3 SING N N 28 BMP N3 C4 SING N N 29 BMP N3 HN3 SING N N 30 BMP C4 O4 DOUB N N 31 BMP C4 C5 SING N N 32 BMP C5 C6 DOUB N N 33 BMP C5 H51 SING N N 34 BMP C6 O1 SING N N 35 BMP O1 HO1 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BMP SMILES ACDLabs 10.04 "O=C1NC(=O)N(C(O)=C1)C2OC(C(O)C2O)COP(=O)(O)O" BMP SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2O" BMP SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)NC(=O)C=C2O" BMP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(N(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)O" BMP SMILES "OpenEye OEToolkits" 1.5.0 "C1=C(N(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O)O" BMP InChI InChI 1.03 "InChI=1S/C9H13N2O10P/c12-4-1-5(13)11(9(16)10-4)8-7(15)6(14)3(21-8)2-20-22(17,18)19/h1,3,6-8,13-15H,2H2,(H,10,12,16)(H2,17,18,19)/t3-,6-,7-,8-/m1/s1" BMP InChIKey InChI 1.03 UDOBICLZEKUKCV-YXZULKJRSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMP "SYSTEMATIC NAME" ACDLabs 10.04 ;6-hydroxyuridine 5'-(dihydrogen phosphate) ; BMP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(6-hydroxy-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BMP "Create component" 2000-01-14 RCSB BMP "Modify descriptor" 2011-06-04 RCSB #