data_BMQ # _chem_comp.id BMQ _chem_comp.name ;1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N2 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-03-02 _chem_comp.pdbx_modified_date 2011-06-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.181 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BMQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EIX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BMQ P P P 0 1 N N N 31.932 47.663 71.858 4.224 -1.000 -0.126 P BMQ 1 BMQ O1P O1P O 0 1 N N N 31.912 48.088 73.325 3.928 -1.831 1.062 O1P BMQ 2 BMQ O2P O2P O 0 1 N N N 31.165 48.535 70.929 5.442 -0.002 0.207 O2P BMQ 3 BMQ O3P O3P O 0 1 N N N 31.425 46.269 71.746 4.632 -1.952 -1.359 O3P BMQ 4 BMQ "O5'" "O5'" O 0 1 N N N 33.469 47.668 71.476 2.920 -0.142 -0.520 "O5'" BMQ 5 BMQ "C5'" "C5'" C 0 1 N N N 33.793 47.341 70.125 2.249 0.721 0.401 "C5'" BMQ 6 BMQ "C4'" "C4'" C 0 1 N N R 35.216 47.262 69.801 1.056 1.380 -0.295 "C4'" BMQ 7 BMQ "O4'" "O4'" O 0 1 N N N 35.835 48.630 69.445 0.069 0.386 -0.619 "O4'" BMQ 8 BMQ "C3'" "C3'" C 0 1 N N S 36.187 46.528 70.678 0.390 2.393 0.656 "C3'" BMQ 9 BMQ "O3'" "O3'" O 0 1 N N N 36.879 45.530 69.858 0.422 3.705 0.091 "O3'" BMQ 10 BMQ "C2'" "C2'" C 0 1 N N R 37.218 47.595 71.126 -1.070 1.893 0.782 "C2'" BMQ 11 BMQ "O2'" "O2'" O 0 1 N N N 38.483 47.163 71.394 -1.988 2.988 0.759 "O2'" BMQ 12 BMQ "C1'" "C1'" C 0 1 N N R 37.178 48.615 70.001 -1.223 1.016 -0.488 "C1'" BMQ 13 BMQ N1 N1 N 0 1 N N N 37.650 50.039 70.403 -2.270 0.010 -0.296 N1 BMQ 14 BMQ C2 C2 C 0 1 N N N 37.019 50.695 71.485 -2.136 -0.888 0.687 C2 BMQ 15 BMQ O2 O2 O 0 1 N N N 36.031 50.152 72.178 -1.140 -0.821 1.378 O2 BMQ 16 BMQ N3 N3 N 0 1 N N N 37.470 51.959 71.818 -3.019 -1.854 0.964 N3 BMQ 17 BMQ C4 C4 C 0 1 N N N 38.492 52.563 71.133 -4.156 -2.008 0.252 C4 BMQ 18 BMQ O4 O4 O 0 1 N N N 38.855 53.694 71.481 -4.948 -2.888 0.516 O4 BMQ 19 BMQ C5 C5 C 0 1 N N N 39.100 51.864 70.041 -4.407 -1.040 -0.888 C5 BMQ 20 BMQ C6 C6 C 0 1 N N N 38.610 50.606 69.752 -3.345 0.020 -1.113 C6 BMQ 21 BMQ O1 O1 O 0 1 N N N 39.190 49.941 68.711 -3.455 0.842 -1.997 O1 BMQ 22 BMQ HOP2 HOP2 H 0 0 N N N 30.768 49.247 71.417 5.691 0.574 -0.528 HOP2 BMQ 23 BMQ HOP3 HOP3 H 0 0 N N N 31.198 45.944 72.609 5.412 -2.499 -1.192 HOP3 BMQ 24 BMQ "H5'1" "H5'1" H 0 0 N N N 33.355 46.354 69.914 1.897 0.140 1.253 "H5'1" BMQ 25 BMQ "H5'2" "H5'2" H 0 0 N N N 33.356 48.123 69.486 2.939 1.491 0.746 "H5'2" BMQ 26 BMQ "H4'" "H4'" H 0 1 N N N 35.104 46.587 68.940 1.388 1.883 -1.203 "H4'" BMQ 27 BMQ "H3'" "H3'" H 0 1 N N N 35.698 46.033 71.530 0.883 2.386 1.628 "H3'" BMQ 28 BMQ "HO3'" "HO3'" H 0 0 N N N 37.500 45.053 70.396 0.015 4.384 0.647 "HO3'" BMQ 29 BMQ "H2'" "H2'" H 0 1 N N N 36.938 47.991 72.113 -1.201 1.297 1.685 "H2'" BMQ 30 BMQ "HO2'" "HO2'" H 0 0 N N N 39.021 47.901 71.657 -1.871 3.614 1.486 "HO2'" BMQ 31 BMQ "H1'" "H1'" H 0 1 N N N 37.909 48.300 69.242 -1.439 1.635 -1.358 "H1'" BMQ 32 BMQ HN3 HN3 H 0 1 N N N 37.039 52.445 72.578 -2.837 -2.461 1.698 HN3 BMQ 33 BMQ H51 H51 H 0 1 N N N 38.954 52.481 69.142 -4.514 -1.618 -1.806 H51 BMQ 34 BMQ H52 H52 H 0 1 N N N 40.166 51.746 70.287 -5.353 -0.533 -0.701 H52 BMQ 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BMQ P O1P DOUB N N 1 BMQ P O2P SING N N 2 BMQ P O3P SING N N 3 BMQ P "O5'" SING N N 4 BMQ O2P HOP2 SING N N 5 BMQ O3P HOP3 SING N N 6 BMQ "O5'" "C5'" SING N N 7 BMQ "C5'" "C4'" SING N N 8 BMQ "C5'" "H5'1" SING N N 9 BMQ "C5'" "H5'2" SING N N 10 BMQ "C4'" "O4'" SING N N 11 BMQ "C4'" "C3'" SING N N 12 BMQ "C4'" "H4'" SING N N 13 BMQ "O4'" "C1'" SING N N 14 BMQ "C3'" "O3'" SING N N 15 BMQ "C3'" "C2'" SING N N 16 BMQ "C3'" "H3'" SING N N 17 BMQ "O3'" "HO3'" SING N N 18 BMQ "C2'" "O2'" SING N N 19 BMQ "C2'" "C1'" SING N N 20 BMQ "C2'" "H2'" SING N N 21 BMQ "O2'" "HO2'" SING N N 22 BMQ "C1'" N1 SING N N 23 BMQ "C1'" "H1'" SING N N 24 BMQ N1 C2 SING N N 25 BMQ N1 C6 SING N N 26 BMQ C2 O2 DOUB N N 27 BMQ C2 N3 SING N N 28 BMQ N3 C4 SING N N 29 BMQ N3 HN3 SING N N 30 BMQ C4 O4 DOUB N N 31 BMQ C4 C5 SING N N 32 BMQ C5 C6 SING N N 33 BMQ C5 H51 SING N N 34 BMQ C5 H52 SING N N 35 BMQ C6 O1 DOUB N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BMQ SMILES ACDLabs 12.01 "O=P(O)(O)OCC2OC(N1C(=O)NC(=O)CC1=O)C(O)C2O" BMQ InChI InChI 1.03 "InChI=1S/C9H13N2O10P/c12-4-1-5(13)11(9(16)10-4)8-7(15)6(14)3(21-8)2-20-22(17,18)19/h3,6-8,14-15H,1-2H2,(H,10,12,16)(H2,17,18,19)/t3-,6-,7-,8-/m1/s1" BMQ InChIKey InChI 1.03 AODYJUNLDJOADV-YXZULKJRSA-N BMQ SMILES_CANONICAL CACTVS 3.370 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C(=O)CC(=O)NC2=O" BMQ SMILES CACTVS 3.370 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C(=O)CC(=O)NC2=O" BMQ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1C(=O)NC(=O)N(C1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" BMQ SMILES "OpenEye OEToolkits" 1.7.2 "C1C(=O)NC(=O)N(C1=O)C2C(C(C(O2)COP(=O)(O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMQ "SYSTEMATIC NAME" ACDLabs 12.01 ;6-oxouridine 5'-(dihydrogen phosphate) ; BMQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3S,4R,5R)-3,4-bis(oxidanyl)-5-[2,4,6-tris(oxidanylidene)-1,3-diazinan-1-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BMQ "Create component" 2000-03-02 RCSB BMQ "Modify descriptor" 2011-06-04 RCSB BMQ "Modify linking type" 2011-06-24 RCSB #