data_BNG # _chem_comp.id BNG _chem_comp.name "nonyl beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C15 H30 O6" _chem_comp.mon_nstd_parent_comp_id BGC _chem_comp.pdbx_synonyms "Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 306.395 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BNG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EHK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BNG Beta-NONYLGLUCOSIDE PDB ? 2 BNG "nonyl beta-D-glucoside" PDB ? 3 BNG "nonyl D-glucoside" PDB ? 4 BNG "nonyl glucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BNG C1 C1 C 0 1 N N R 97.483 10.394 31.666 0.640 0.198 -2.260 C1 BNG 1 BNG C2 C2 C 0 1 N N R 98.660 9.470 32.079 1.506 -0.211 -3.454 C2 BNG 2 BNG C3 C3 C 0 1 N N S 98.820 8.402 31.007 0.844 0.284 -4.744 C3 BNG 3 BNG C4 C4 C 0 1 N N S 97.513 7.623 30.951 -0.600 -0.227 -4.781 C4 BNG 4 BNG C5 C5 C 0 1 N N R 96.361 8.595 30.594 -1.307 0.182 -3.487 C5 BNG 5 BNG C6 C6 C 0 1 N N N 95.040 7.818 30.534 -2.759 -0.296 -3.529 C6 BNG 6 BNG "C1'" "C1'" C 0 1 N N N 98.148 12.569 32.183 0.418 0.181 0.023 "C1'" BNG 7 BNG "C2'" "C2'" C 0 1 N N N 97.914 13.818 33.044 1.034 -0.249 1.355 "C2'" BNG 8 BNG "C3'" "C3'" C 0 1 N N N 96.526 14.391 32.841 0.125 0.191 2.504 "C3'" BNG 9 BNG "C4'" "C4'" C 0 1 N N N 96.446 15.844 33.292 0.741 -0.240 3.836 "C4'" BNG 10 BNG "C5'" "C5'" C 0 1 N N N 95.085 16.439 32.952 -0.167 0.200 4.985 "C5'" BNG 11 BNG "C6'" "C6'" C 0 1 N N N 95.058 17.949 33.134 0.448 -0.230 6.318 "C6'" BNG 12 BNG "C7'" "C7'" C 0 1 N N N 93.750 18.535 32.608 -0.460 0.210 7.466 "C7'" BNG 13 BNG "C8'" "C8'" C 0 1 N N N 93.747 20.058 32.642 0.155 -0.220 8.799 "C8'" BNG 14 BNG "C9'" "C9'" C 0 1 N N N 92.474 20.575 31.993 -0.753 0.220 9.948 "C9'" BNG 15 BNG O1 O1 O 0 1 N N N 97.356 11.452 32.609 1.267 -0.230 -1.049 O1 BNG 16 BNG O2 O2 O 0 1 N N N 99.871 10.230 32.177 2.803 0.374 -3.327 O2 BNG 17 BNG O3 O3 O 0 1 N N N 99.903 7.525 31.341 1.558 -0.215 -5.876 O3 BNG 18 BNG O4 O4 O 0 1 N N N 97.609 6.590 29.961 -1.283 0.342 -5.899 O4 BNG 19 BNG O5 O5 O 0 1 N N N 96.271 9.649 31.552 -0.646 -0.406 -2.368 O5 BNG 20 BNG O6 O6 O 0 1 N N N 93.956 8.644 30.152 -3.424 0.091 -2.324 O6 BNG 21 BNG H1 H1 H 0 1 N N N 97.695 10.835 30.664 0.531 1.283 -2.247 H1 BNG 22 BNG H2 H2 H 0 1 N N N 98.449 9.004 33.070 1.597 -1.296 -3.484 H2 BNG 23 BNG H3 H3 H 0 1 N N N 99.048 8.864 30.018 0.846 1.374 -4.762 H3 BNG 24 BNG H4 H4 H 0 1 N N N 97.309 7.153 31.941 -0.600 -1.313 -4.868 H4 BNG 25 BNG H5 H5 H 0 1 N N N 96.569 9.051 29.598 -1.286 1.268 -3.390 H5 BNG 26 BNG H61 H61 H 0 1 N N N 95.124 6.927 29.868 -3.265 0.153 -4.383 H61 BNG 27 BNG H62 H62 H 0 1 N N N 94.832 7.298 31.498 -2.782 -1.381 -3.623 H62 BNG 28 BNG "H1'1" "H1'1" H 0 0 N N N 97.982 12.789 31.102 -0.562 -0.282 -0.090 "H1'1" BNG 29 BNG "H1'2" "H1'2" H 0 0 N N N 99.230 12.303 32.147 0.311 1.265 0.006 "H1'2" BNG 30 BNG "H2'1" "H2'1" H 0 0 N N N 98.113 13.611 34.121 2.014 0.213 1.469 "H2'1" BNG 31 BNG "H2'2" "H2'2" H 0 0 N N N 98.700 14.587 32.864 1.141 -1.334 1.372 "H2'2" BNG 32 BNG "H3'1" "H3'1" H 0 0 N N N 96.187 14.273 31.785 -0.854 -0.272 2.390 "H3'1" BNG 33 BNG "H3'2" "H3'2" H 0 0 N N N 95.750 13.766 33.342 0.018 1.275 2.487 "H3'2" BNG 34 BNG "H4'1" "H4'1" H 0 0 N N N 96.686 15.954 34.375 1.721 0.223 3.950 "H4'1" BNG 35 BNG "H4'2" "H4'2" H 0 0 N N N 97.280 16.453 32.872 0.848 -1.324 3.853 "H4'2" BNG 36 BNG "H5'1" "H5'1" H 0 0 N N N 94.763 16.150 31.924 -1.147 -0.262 4.871 "H5'1" BNG 37 BNG "H5'2" "H5'2" H 0 0 N N N 94.272 15.947 33.535 -0.274 1.285 4.968 "H5'2" BNG 38 BNG "H6'1" "H6'1" H 0 0 N N N 95.243 18.240 34.194 1.428 0.232 6.431 "H6'1" BNG 39 BNG "H6'2" "H6'2" H 0 0 N N N 95.945 18.436 32.667 0.555 -1.315 6.334 "H6'2" BNG 40 BNG "H7'1" "H7'1" H 0 0 N N N 93.519 18.153 31.585 -1.440 -0.252 7.353 "H7'1" BNG 41 BNG "H7'2" "H7'2" H 0 0 N N N 92.872 18.117 33.154 -0.567 1.295 7.450 "H7'2" BNG 42 BNG "H8'1" "H8'1" H 0 0 N N N 93.886 20.457 33.673 1.135 0.242 8.913 "H8'1" BNG 43 BNG "H8'2" "H8'2" H 0 0 N N N 94.663 20.492 32.178 0.262 -1.305 8.816 "H8'2" BNG 44 BNG "H9'1" "H9'1" H 0 0 N N N 92.471 21.689 32.017 -0.314 -0.086 10.897 "H9'1" BNG 45 BNG "H9'2" "H9'2" H 0 0 N N N 92.334 20.175 30.961 -0.860 1.305 9.931 "H9'2" BNG 46 BNG "H9'3" "H9'3" H 0 0 N N N 91.557 20.140 32.456 -1.733 -0.242 9.834 "H9'3" BNG 47 BNG HO2 HO2 H 0 1 N Y N 100.591 9.664 32.429 3.183 0.036 -2.504 HO2 BNG 48 BNG HO3 HO3 H 0 1 N Y N 100.002 6.858 30.671 2.459 0.130 -5.813 HO3 BNG 49 BNG HO4 HO4 H 0 1 N Y N 96.793 6.103 29.926 -0.805 0.060 -6.692 HO4 BNG 50 BNG HO6 HO6 H 0 1 N Y N 93.137 8.162 30.114 -4.334 -0.228 -2.392 HO6 BNG 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BNG C1 C2 SING N N 1 BNG C1 O1 SING N N 2 BNG C1 O5 SING N N 3 BNG C1 H1 SING N N 4 BNG C2 C3 SING N N 5 BNG C2 O2 SING N N 6 BNG C2 H2 SING N N 7 BNG C3 C4 SING N N 8 BNG C3 O3 SING N N 9 BNG C3 H3 SING N N 10 BNG C4 C5 SING N N 11 BNG C4 O4 SING N N 12 BNG C4 H4 SING N N 13 BNG C5 C6 SING N N 14 BNG C5 O5 SING N N 15 BNG C5 H5 SING N N 16 BNG C6 O6 SING N N 17 BNG C6 H61 SING N N 18 BNG C6 H62 SING N N 19 BNG "C1'" "C2'" SING N N 20 BNG "C1'" O1 SING N N 21 BNG "C1'" "H1'1" SING N N 22 BNG "C1'" "H1'2" SING N N 23 BNG "C2'" "C3'" SING N N 24 BNG "C2'" "H2'1" SING N N 25 BNG "C2'" "H2'2" SING N N 26 BNG "C3'" "C4'" SING N N 27 BNG "C3'" "H3'1" SING N N 28 BNG "C3'" "H3'2" SING N N 29 BNG "C4'" "C5'" SING N N 30 BNG "C4'" "H4'1" SING N N 31 BNG "C4'" "H4'2" SING N N 32 BNG "C5'" "C6'" SING N N 33 BNG "C5'" "H5'1" SING N N 34 BNG "C5'" "H5'2" SING N N 35 BNG "C6'" "C7'" SING N N 36 BNG "C6'" "H6'1" SING N N 37 BNG "C6'" "H6'2" SING N N 38 BNG "C7'" "C8'" SING N N 39 BNG "C7'" "H7'1" SING N N 40 BNG "C7'" "H7'2" SING N N 41 BNG "C8'" "C9'" SING N N 42 BNG "C8'" "H8'1" SING N N 43 BNG "C8'" "H8'2" SING N N 44 BNG "C9'" "H9'1" SING N N 45 BNG "C9'" "H9'2" SING N N 46 BNG "C9'" "H9'3" SING N N 47 BNG O2 HO2 SING N N 48 BNG O3 HO3 SING N N 49 BNG O4 HO4 SING N N 50 BNG O6 HO6 SING N N 51 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BNG SMILES ACDLabs 10.04 "O(CCCCCCCCC)C1OC(C(O)C(O)C1O)CO" BNG SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O" BNG SMILES CACTVS 3.341 "CCCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O" BNG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O" BNG SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCOC1C(C(C(C(O1)CO)O)O)O" BNG InChI InChI 1.03 "InChI=1S/C15H30O6/c1-2-3-4-5-6-7-8-9-20-15-14(19)13(18)12(17)11(10-16)21-15/h11-19H,2-10H2,1H3/t11-,12-,13+,14-,15-/m1/s1" BNG InChIKey InChI 1.03 QFAPUKLCALRPLH-UXXRCYHCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BNG "SYSTEMATIC NAME" ACDLabs 10.04 "nonyl beta-D-glucopyranoside" BNG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-nonoxy-oxane-3,4,5-triol" BNG "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-nonylglucoside # _pdbx_chem_comp_related.comp_id BNG _pdbx_chem_comp_related.related_comp_id BGC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 BNG C1 BGC C1 "Carbohydrate core" 2 BNG C2 BGC C2 "Carbohydrate core" 3 BNG C3 BGC C3 "Carbohydrate core" 4 BNG C4 BGC C4 "Carbohydrate core" 5 BNG C5 BGC C5 "Carbohydrate core" 6 BNG C6 BGC C6 "Carbohydrate core" 7 BNG O1 BGC O1 "Carbohydrate core" 8 BNG O2 BGC O2 "Carbohydrate core" 9 BNG O3 BGC O3 "Carbohydrate core" 10 BNG O4 BGC O4 "Carbohydrate core" 11 BNG O5 BGC O5 "Carbohydrate core" 12 BNG O6 BGC O6 "Carbohydrate core" 13 BNG H1 BGC H1 "Carbohydrate core" 14 BNG H2 BGC H2 "Carbohydrate core" 15 BNG H3 BGC H3 "Carbohydrate core" 16 BNG H4 BGC H4 "Carbohydrate core" 17 BNG H5 BGC H5 "Carbohydrate core" 18 BNG H61 BGC H61 "Carbohydrate core" 19 BNG H62 BGC H62 "Carbohydrate core" 20 BNG HO2 BGC HO2 "Carbohydrate core" 21 BNG HO3 BGC HO3 "Carbohydrate core" 22 BNG HO4 BGC HO4 "Carbohydrate core" 23 BNG HO6 BGC HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BNG "CARBOHYDRATE ISOMER" D PDB ? BNG "CARBOHYDRATE RING" pyranose PDB ? BNG "CARBOHYDRATE ANOMER" beta PDB ? BNG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BNG "Create component" 1999-07-08 RCSB BNG "Modify descriptor" 2011-06-04 RCSB BNG "Other modification" 2020-07-03 RCSB BNG "Modify parent residue" 2020-07-17 RCSB BNG "Modify name" 2020-07-17 RCSB BNG "Modify synonyms" 2020-07-17 RCSB BNG "Modify linking type" 2020-07-17 RCSB BNG "Modify leaving atom flag" 2020-07-17 RCSB ##