data_BOG # _chem_comp.id BOG _chem_comp.name "octyl beta-D-glucopyranoside" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H28 O6" _chem_comp.mon_nstd_parent_comp_id BGC _chem_comp.pdbx_synonyms "Beta-Octylglucoside; octyl beta-D-glucoside; octyl D-glucoside; octyl glucoside" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 292.369 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BOG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3BIF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BOG Beta-Octylglucoside PDB ? 2 BOG "octyl beta-D-glucoside" PDB ? 3 BOG "octyl D-glucoside" PDB ? 4 BOG "octyl glucoside" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BOG C1 C1 C 0 1 N N R -22.384 -89.769 58.441 -0.643 -0.195 -1.766 C1 BOG 1 BOG O1 O1 O 0 1 N N N -22.896 -88.914 57.431 -1.239 0.229 -0.538 O1 BOG 2 BOG C2 C2 C 0 1 N N R -21.602 -88.949 59.453 -1.534 0.226 -2.936 C2 BOG 3 BOG O2 O2 O 0 1 N N N -20.557 -88.251 58.818 -2.831 -0.352 -2.783 O2 BOG 4 BOG C3 C3 C 0 1 N N S -21.022 -89.890 60.480 -0.904 -0.264 -4.245 C3 BOG 5 BOG O3 O3 O 0 1 N N N -20.242 -89.153 61.430 -1.642 0.246 -5.357 O3 BOG 6 BOG C4 C4 C 0 1 N N S -22.180 -90.578 61.181 0.541 0.239 -4.312 C4 BOG 7 BOG O4 O4 O 0 1 N N N -21.674 -91.502 62.133 1.195 -0.327 -5.449 O4 BOG 8 BOG C5 C5 C 0 1 N N R -23.036 -91.320 60.146 1.275 -0.182 -3.037 C5 BOG 9 BOG O5 O5 O 0 1 N N N -23.463 -90.426 59.115 0.644 0.402 -1.900 O5 BOG 10 BOG C6 C6 C 0 1 N N N -24.240 -91.914 60.840 2.729 0.287 -3.110 C6 BOG 11 BOG O6 O6 O 0 1 N N N -23.851 -93.111 61.490 3.419 -0.111 -1.923 O6 BOG 12 BOG "C1'" "C1'" C 0 1 N N N -22.123 -88.891 56.237 -0.368 -0.194 0.511 "C1'" BOG 13 BOG "C2'" "C2'" C 0 1 N N N -21.748 -87.454 55.914 -0.951 0.231 1.860 "C2'" BOG 14 BOG "C3'" "C3'" C 0 1 N N N -20.235 -87.325 55.968 -0.018 -0.221 2.985 "C3'" BOG 15 BOG "C4'" "C4'" C 0 1 N N N -19.852 -85.911 56.349 -0.601 0.204 4.334 "C4'" BOG 16 BOG "C5'" "C5'" C 0 1 N N N -18.352 -85.778 56.233 0.331 -0.249 5.459 "C5'" BOG 17 BOG "C6'" "C6'" C 0 1 N N N -17.911 -84.459 56.821 -0.251 0.176 6.808 "C6'" BOG 18 BOG "C7'" "C7'" C 0 1 N N N -16.411 -84.301 56.609 0.681 -0.276 7.932 "C7'" BOG 19 BOG "C8'" "C8'" C 0 1 N N N -15.984 -82.949 57.149 0.098 0.149 9.281 "C8'" BOG 20 BOG H1 H1 H 0 1 N N N -21.717 -90.528 57.968 -0.540 -1.281 -1.762 H1 BOG 21 BOG H2 H2 H 0 1 N N N -22.280 -88.208 59.937 -1.619 1.312 -2.958 H2 BOG 22 BOG HO2 HO2 H 0 1 N Y N -20.068 -87.738 59.450 -3.190 -0.017 -1.950 HO2 BOG 23 BOG H3 H3 H 0 1 N N N -20.359 -90.642 59.992 -0.913 -1.354 -4.270 H3 BOG 24 BOG HO3 HO3 H 0 1 N Y N -19.876 -89.745 62.076 -2.543 -0.094 -5.275 HO3 BOG 25 BOG H4 H4 H 0 1 N N N -22.807 -89.816 61.701 0.545 1.326 -4.392 H4 BOG 26 BOG HO4 HO4 H 0 1 N Y N -22.398 -91.932 62.571 0.701 -0.036 -6.228 HO4 BOG 27 BOG H5 H5 H 0 1 N N N -22.428 -92.129 59.679 1.250 -1.268 -2.947 H5 BOG 28 BOG H61 H61 H 0 1 N N N -24.729 -91.192 61.535 3.213 -0.158 -3.978 H61 BOG 29 BOG H62 H62 H 0 1 N N N -25.098 -92.067 60.145 2.756 1.373 -3.197 H62 BOG 30 BOG HO6 HO6 H 0 1 N Y N -24.607 -93.484 61.926 4.329 0.204 -2.010 HO6 BOG 31 BOG "H1'1" "H1'1" H 0 0 N N N -21.231 -89.558 56.296 0.611 0.264 0.378 "H1'1" BOG 32 BOG "H1'2" "H1'2" H 0 0 N N N -22.640 -89.395 55.387 -0.268 -1.279 0.485 "H1'2" BOG 33 BOG "H2'1" "H2'1" H 0 0 N N N -22.172 -87.109 54.941 -1.930 -0.226 1.994 "H2'1" BOG 34 BOG "H2'2" "H2'2" H 0 0 N N N -22.263 -86.718 56.574 -1.051 1.316 1.886 "H2'2" BOG 35 BOG "H3'1" "H3'1" H 0 0 N N N -19.774 -88.080 56.646 0.961 0.236 2.852 "H3'1" BOG 36 BOG "H3'2" "H3'2" H 0 0 N N N -19.753 -87.647 55.015 0.081 -1.307 2.959 "H3'2" BOG 37 BOG "H4'1" "H4'1" H 0 0 N N N -20.398 -85.143 55.753 -1.581 -0.254 4.467 "H4'1" BOG 38 BOG "H4'2" "H4'2" H 0 0 N N N -20.232 -85.619 57.356 -0.701 1.289 4.360 "H4'2" BOG 39 BOG "H5'1" "H5'1" H 0 0 N N N -17.817 -86.642 56.691 1.311 0.209 5.325 "H5'1" BOG 40 BOG "H5'2" "H5'2" H 0 0 N N N -17.998 -85.909 55.183 0.431 -1.334 5.433 "H5'2" BOG 41 BOG "H6'1" "H6'1" H 0 0 N N N -18.490 -83.597 56.415 -1.231 -0.281 6.941 "H6'1" BOG 42 BOG "H6'2" "H6'2" H 0 0 N N N -18.202 -84.352 57.891 -0.351 1.261 6.834 "H6'2" BOG 43 BOG "H7'1" "H7'1" H 0 0 N N N -15.826 -85.141 57.051 1.661 0.181 7.799 "H7'1" BOG 44 BOG "H7'2" "H7'2" H 0 0 N N N -16.112 -84.449 55.545 0.781 -1.361 7.906 "H7'2" BOG 45 BOG "H8'1" "H8'1" H 0 0 N N N -14.885 -82.833 56.993 0.763 -0.173 10.083 "H8'1" BOG 46 BOG "H8'2" "H8'2" H 0 0 N N N -16.568 -82.108 56.706 -0.001 1.234 9.308 "H8'2" BOG 47 BOG "H8'3" "H8'3" H 0 0 N N N -16.282 -82.800 58.213 -0.881 -0.309 9.415 "H8'3" BOG 48 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BOG C1 O1 SING N N 1 BOG C1 C2 SING N N 2 BOG C1 O5 SING N N 3 BOG C1 H1 SING N N 4 BOG O1 "C1'" SING N N 5 BOG C2 O2 SING N N 6 BOG C2 C3 SING N N 7 BOG C2 H2 SING N N 8 BOG O2 HO2 SING N N 9 BOG C3 O3 SING N N 10 BOG C3 C4 SING N N 11 BOG C3 H3 SING N N 12 BOG O3 HO3 SING N N 13 BOG C4 O4 SING N N 14 BOG C4 C5 SING N N 15 BOG C4 H4 SING N N 16 BOG O4 HO4 SING N N 17 BOG C5 O5 SING N N 18 BOG C5 C6 SING N N 19 BOG C5 H5 SING N N 20 BOG C6 O6 SING N N 21 BOG C6 H61 SING N N 22 BOG C6 H62 SING N N 23 BOG O6 HO6 SING N N 24 BOG "C1'" "C2'" SING N N 25 BOG "C1'" "H1'1" SING N N 26 BOG "C1'" "H1'2" SING N N 27 BOG "C2'" "C3'" SING N N 28 BOG "C2'" "H2'1" SING N N 29 BOG "C2'" "H2'2" SING N N 30 BOG "C3'" "C4'" SING N N 31 BOG "C3'" "H3'1" SING N N 32 BOG "C3'" "H3'2" SING N N 33 BOG "C4'" "C5'" SING N N 34 BOG "C4'" "H4'1" SING N N 35 BOG "C4'" "H4'2" SING N N 36 BOG "C5'" "C6'" SING N N 37 BOG "C5'" "H5'1" SING N N 38 BOG "C5'" "H5'2" SING N N 39 BOG "C6'" "C7'" SING N N 40 BOG "C6'" "H6'1" SING N N 41 BOG "C6'" "H6'2" SING N N 42 BOG "C7'" "C8'" SING N N 43 BOG "C7'" "H7'1" SING N N 44 BOG "C7'" "H7'2" SING N N 45 BOG "C8'" "H8'1" SING N N 46 BOG "C8'" "H8'2" SING N N 47 BOG "C8'" "H8'3" SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BOG SMILES ACDLabs 10.04 "O(CCCCCCCC)C1OC(C(O)C(O)C1O)CO" BOG SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@H]1O" BOG SMILES CACTVS 3.341 "CCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O" BOG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O" BOG SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCOC1C(C(C(C(O1)CO)O)O)O" BOG InChI InChI 1.03 "InChI=1S/C14H28O6/c1-2-3-4-5-6-7-8-19-14-13(18)12(17)11(16)10(9-15)20-14/h10-18H,2-9H2,1H3/t10-,11-,12+,13-,14-/m1/s1" BOG InChIKey InChI 1.03 HEGSGKPQLMEBJL-RKQHYHRCSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BOG "SYSTEMATIC NAME" ACDLabs 10.04 "octyl beta-D-glucopyranoside" BOG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-octoxy-oxane-3,4,5-triol" BOG "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 b-octylglucoside # _pdbx_chem_comp_related.comp_id BOG _pdbx_chem_comp_related.related_comp_id BGC _pdbx_chem_comp_related.relationship_type "Carbohydrate core" _pdbx_chem_comp_related.details ? # # loop_ _pdbx_chem_comp_atom_related.ordinal _pdbx_chem_comp_atom_related.comp_id _pdbx_chem_comp_atom_related.atom_id _pdbx_chem_comp_atom_related.related_comp_id _pdbx_chem_comp_atom_related.related_atom_id _pdbx_chem_comp_atom_related.related_type 1 BOG C1 BGC C1 "Carbohydrate core" 2 BOG C2 BGC C2 "Carbohydrate core" 3 BOG C3 BGC C3 "Carbohydrate core" 4 BOG C4 BGC C4 "Carbohydrate core" 5 BOG C5 BGC C5 "Carbohydrate core" 6 BOG C6 BGC C6 "Carbohydrate core" 7 BOG O1 BGC O1 "Carbohydrate core" 8 BOG O2 BGC O2 "Carbohydrate core" 9 BOG O3 BGC O3 "Carbohydrate core" 10 BOG O4 BGC O4 "Carbohydrate core" 11 BOG O5 BGC O5 "Carbohydrate core" 12 BOG O6 BGC O6 "Carbohydrate core" 13 BOG H1 BGC H1 "Carbohydrate core" 14 BOG H2 BGC H2 "Carbohydrate core" 15 BOG H3 BGC H3 "Carbohydrate core" 16 BOG H4 BGC H4 "Carbohydrate core" 17 BOG H5 BGC H5 "Carbohydrate core" 18 BOG H61 BGC H61 "Carbohydrate core" 19 BOG H62 BGC H62 "Carbohydrate core" 20 BOG HO2 BGC HO2 "Carbohydrate core" 21 BOG HO3 BGC HO3 "Carbohydrate core" 22 BOG HO4 BGC HO4 "Carbohydrate core" 23 BOG HO6 BGC HO6 "Carbohydrate core" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BOG "CARBOHYDRATE ISOMER" D PDB ? BOG "CARBOHYDRATE RING" pyranose PDB ? BOG "CARBOHYDRATE ANOMER" beta PDB ? BOG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BOG "Create component" 1999-07-08 RCSB BOG "Modify descriptor" 2011-06-04 RCSB BOG "Other modification" 2020-07-03 RCSB BOG "Modify parent residue" 2020-07-17 RCSB BOG "Modify name" 2020-07-17 RCSB BOG "Modify synonyms" 2020-07-17 RCSB BOG "Modify linking type" 2020-07-17 RCSB BOG "Modify leaving atom flag" 2020-07-17 RCSB ##