data_BQL # _chem_comp.id BQL _chem_comp.name "[(2~{S})-2-azanyl-3-oxidanylidene-propyl] [(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H18 N3 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-04 _chem_comp.pdbx_modified_date 2019-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 395.259 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BQL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6J5V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BQL N N1 N 0 1 N N N 103.093 81.218 62.750 -5.219 2.275 -1.112 N BQL 1 BQL CA C1 C 0 1 N N S 101.781 81.639 63.309 -5.830 0.947 -0.973 CA BQL 2 BQL C C2 C 0 1 N N N 101.653 83.121 63.464 -7.291 1.099 -0.635 C BQL 3 BQL O O1 O 0 1 N N N 100.590 83.688 63.148 -7.773 2.201 -0.522 O BQL 4 BQL CB C3 C 0 1 N N N 101.571 80.979 64.660 -5.126 0.176 0.146 CB BQL 5 BQL "C1'" C4 C 0 1 N N R 99.257 75.189 60.118 2.866 -0.627 -0.877 "C1'" BQL 6 BQL C2 C5 C 0 1 N N N 101.347 73.918 60.807 3.318 1.185 0.679 C2 BQL 7 BQL "C2'" C6 C 0 1 N N R 98.176 74.371 60.777 3.268 -1.787 0.070 "C2'" BQL 8 BQL C3 C7 C 0 1 N N R 98.624 76.418 62.001 0.908 -1.817 -0.540 C3 BQL 9 BQL "C3'" C8 C 0 1 N N S 97.747 75.184 61.975 2.043 -2.728 -0.032 "C3'" BQL 10 BQL C4 C9 C 0 1 N N N 102.431 72.640 59.188 4.840 2.895 0.212 C4 BQL 11 BQL C5 C10 C 0 1 N N N 101.487 72.992 58.241 5.116 2.293 -1.039 C5 BQL 12 BQL "C5'" C11 C 0 1 N N N 99.320 76.606 63.340 -0.251 -1.824 0.459 "C5'" BQL 13 BQL C6 C12 C 0 1 N N N 100.464 73.850 58.595 4.469 1.156 -1.378 C6 BQL 14 BQL N1 N2 N 0 1 N N N 100.385 74.308 59.842 3.567 0.605 -0.510 N1 BQL 15 BQL N3 N3 N 0 1 N N N 102.336 73.099 60.441 3.944 2.320 1.040 N3 BQL 16 BQL O1 O2 O 0 1 N N N 96.394 75.599 61.809 2.296 -3.780 -0.965 O1 BQL 17 BQL O2 O3 O 0 1 N N N 101.320 74.304 61.996 2.513 0.678 1.436 O2 BQL 18 BQL O3 O4 O 0 1 N N N 97.104 74.228 59.847 4.451 -2.438 -0.396 O3 BQL 19 BQL O4 O5 O 0 1 N N N 103.361 71.873 58.872 5.407 3.922 0.537 O4 BQL 20 BQL "O4'" O6 O 0 1 N N N 99.603 76.266 60.980 1.446 -0.489 -0.656 "O4'" BQL 21 BQL "O5'" O7 O 0 1 N N N 100.104 77.792 63.265 -1.340 -1.066 -0.071 "O5'" BQL 22 BQL OP1 O8 O 0 1 N N N 99.854 78.144 65.784 -2.466 -0.008 2.056 OP1 BQL 23 BQL OP2 O9 O 0 1 N N N 99.166 79.916 64.287 -3.294 -2.180 1.074 OP2 BQL 24 BQL OP3 O10 O 0 1 N N N 101.580 79.566 64.522 -3.768 -0.070 -0.227 OP3 BQL 25 BQL P P1 P 0 1 N N N 100.163 78.830 64.485 -2.730 -0.860 0.716 P BQL 26 BQL H1 H1 H 0 1 N N N 103.118 80.221 62.671 -5.623 2.780 -1.887 H1 BQL 27 BQL H2 H2 H 0 1 N N N 103.217 81.628 61.846 -5.299 2.802 -0.255 H2 BQL 28 BQL H4 H4 H 0 1 N N N 100.986 81.292 62.632 -5.729 0.400 -1.910 H4 BQL 29 BQL H5 H5 H 0 1 N N N 102.481 83.698 63.849 -7.907 0.223 -0.494 H5 BQL 30 BQL H6 H6 H 0 1 N N N 102.379 81.283 65.342 -5.150 0.764 1.063 H6 BQL 31 BQL H7 H7 H 0 1 N N N 100.603 81.298 65.073 -5.635 -0.773 0.310 H7 BQL 32 BQL H8 H8 H 0 1 N N N 98.867 75.585 59.169 3.069 -0.891 -1.915 H8 BQL 33 BQL H9 H9 H 0 1 N N N 98.571 73.395 61.096 3.399 -1.428 1.091 H9 BQL 34 BQL H10 H10 H 0 1 N N N 98.001 77.302 61.799 0.561 -2.166 -1.513 H10 BQL 35 BQL H11 H11 H 0 1 N N N 97.881 74.602 62.899 1.794 -3.137 0.947 H11 BQL 36 BQL H12 H12 H 0 1 N N N 101.549 72.601 57.236 5.830 2.738 -1.716 H12 BQL 37 BQL H13 H13 H 0 1 N N N 98.571 76.703 64.140 -0.574 -2.850 0.635 H13 BQL 38 BQL H14 H14 H 0 1 N N N 99.969 75.742 63.548 0.077 -1.380 1.399 H14 BQL 39 BQL H15 H15 H 0 1 N N N 99.730 74.149 57.861 4.667 0.683 -2.328 H15 BQL 40 BQL H16 H16 H 0 1 N N N 103.019 72.823 61.117 3.749 2.728 1.898 H16 BQL 41 BQL H17 H17 H 0 1 N N N 96.124 76.110 62.563 3.039 -4.349 -0.724 H17 BQL 42 BQL H18 H18 H 0 1 N N N 96.409 73.714 60.241 4.743 -3.171 0.164 H18 BQL 43 BQL H19 H19 H 0 1 N N N 99.097 78.553 66.186 -2.095 0.871 1.897 H19 BQL 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BQL C5 C6 DOUB N N 1 BQL C5 C4 SING N N 2 BQL C6 N1 SING N N 3 BQL O4 C4 DOUB N N 4 BQL C4 N3 SING N N 5 BQL N1 "C1'" SING N N 6 BQL N1 C2 SING N N 7 BQL O3 "C2'" SING N N 8 BQL "C1'" "C2'" SING N N 9 BQL "C1'" "O4'" SING N N 10 BQL N3 C2 SING N N 11 BQL "C2'" "C3'" SING N N 12 BQL C2 O2 DOUB N N 13 BQL "O4'" C3 SING N N 14 BQL O1 "C3'" SING N N 15 BQL "C3'" C3 SING N N 16 BQL C3 "C5'" SING N N 17 BQL N CA SING N N 18 BQL O C DOUB N N 19 BQL "O5'" "C5'" SING N N 20 BQL "O5'" P SING N N 21 BQL CA C SING N N 22 BQL CA CB SING N N 23 BQL OP2 P DOUB N N 24 BQL P OP3 SING N N 25 BQL P OP1 SING N N 26 BQL OP3 CB SING N N 27 BQL N H1 SING N N 28 BQL N H2 SING N N 29 BQL CA H4 SING N N 30 BQL C H5 SING N N 31 BQL CB H6 SING N N 32 BQL CB H7 SING N N 33 BQL "C1'" H8 SING N N 34 BQL "C2'" H9 SING N N 35 BQL C3 H10 SING N N 36 BQL "C3'" H11 SING N N 37 BQL C5 H12 SING N N 38 BQL "C5'" H13 SING N N 39 BQL "C5'" H14 SING N N 40 BQL C6 H15 SING N N 41 BQL N3 H16 SING N N 42 BQL O1 H17 SING N N 43 BQL O3 H18 SING N N 44 BQL OP1 H19 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BQL InChI InChI 1.03 "InChI=1S/C12H18N3O10P/c13-6(3-16)4-23-26(21,22)24-5-7-9(18)10(19)11(25-7)15-2-1-8(17)14-12(15)20/h1-3,6-7,9-11,18-19H,4-5,13H2,(H,21,22)(H,14,17,20)/t6-,7-,9-,10-,11-/m1/s1" BQL InChIKey InChI 1.03 DGKQNNIXYUXPCL-JBSYKWBFSA-N BQL SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CO[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O)C=O" BQL SMILES CACTVS 3.385 "N[CH](CO[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O)C=O" BQL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OC[C@@H](C=O)N)O)O" BQL SMILES "OpenEye OEToolkits" 2.0.6 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OCC(C=O)N)O)O" # _pdbx_chem_comp_identifier.comp_id BQL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{S})-2-azanyl-3-oxidanylidene-propyl] [(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BQL "Create component" 2019-03-04 PDBJ BQL "Initial release" 2019-03-20 RCSB ##