data_BQO # _chem_comp.id BQO _chem_comp.name "[(2~{R},3~{S})-3-azanyl-4-oxidanylidene-butan-2-yl] [(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H20 N3 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-04 _chem_comp.pdbx_modified_date 2019-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 409.286 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BQO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6J5V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BQO N1 N1 N 0 1 N N N 109.520 87.934 67.700 3.458 -0.458 0.186 N1 BQO 1 BQO C1 C1 C 0 1 N N N 105.549 86.850 68.388 -0.472 1.862 -0.580 C1 BQO 2 BQO O1 O1 O 0 1 N N N 109.133 87.897 71.043 4.273 2.587 -0.163 O1 BQO 3 BQO N N2 N 0 1 N N N 102.701 83.762 63.961 -5.246 -2.148 1.699 N BQO 4 BQO CA C2 C 0 1 N N S 102.691 85.197 64.129 -5.505 -1.677 0.332 CA BQO 5 BQO C C3 C 0 1 N N N 102.905 85.859 62.782 -4.574 -2.375 -0.626 C BQO 6 BQO O O2 O 0 1 N N N 103.961 85.637 62.153 -3.776 -3.181 -0.212 O BQO 7 BQO CB C4 C 0 1 N N R 103.773 85.625 65.100 -5.273 -0.167 0.260 CB BQO 8 BQO CG2 C5 C 0 1 N N N 103.749 87.143 65.176 -6.128 0.532 1.319 CG2 BQO 9 BQO "C1'" C6 C 0 1 N N R 109.021 87.174 68.775 2.767 0.783 0.547 "C1'" BQO 10 BQO C2 C7 C 0 1 N N N 110.854 88.035 67.536 4.423 -0.941 0.989 C2 BQO 11 BQO "C2'" C8 C 0 1 N N R 108.503 88.135 69.777 3.067 1.895 -0.491 "C2'" BQO 12 BQO C3 C9 C 0 1 N N R 106.769 86.612 69.193 0.767 1.926 0.315 C3 BQO 13 BQO "C3'" C10 C 0 1 N N S 107.065 87.885 69.882 1.837 2.823 -0.335 "C3'" BQO 14 BQO C4 C11 C 0 1 N N N 110.518 89.377 65.679 4.764 -2.756 -0.441 C4 BQO 15 BQO C5 C12 C 0 1 N N N 109.175 89.278 65.850 3.746 -2.263 -1.292 C5 BQO 16 BQO C6 C13 C 0 1 N N N 108.685 88.544 66.876 3.110 -1.119 -0.960 C6 BQO 17 BQO N3 N3 N 0 1 N N N 111.346 88.766 66.510 5.073 -2.079 0.683 N3 BQO 18 BQO O2 O3 O 0 1 N N N 111.581 87.482 68.288 4.714 -0.340 2.006 O2 BQO 19 BQO "O3'" O4 O 0 1 N N N 106.660 87.836 71.258 2.149 3.927 0.517 "O3'" BQO 20 BQO O4 O5 O 0 1 N N N 110.955 90.016 64.784 5.352 -3.786 -0.719 O4 BQO 21 BQO "O4'" O6 O 0 1 N N N 107.907 86.333 68.312 1.336 0.614 0.456 "O4'" BQO 22 BQO "O5'" O7 O 0 1 N N N 104.710 85.758 68.586 -1.502 1.125 0.083 "O5'" BQO 23 BQO OP1 O8 O 0 1 N N N 103.449 85.100 66.343 -3.892 0.115 0.501 OP1 BQO 24 BQO OP2 O9 O 0 1 N N N 105.997 85.123 66.483 -3.562 2.151 -0.953 OP2 BQO 25 BQO OP3 O10 O 0 1 N N N 104.819 83.239 67.700 -2.787 -0.067 -1.877 OP3 BQO 26 BQO P P1 P 0 1 N N N 104.793 84.815 67.243 -2.949 0.859 -0.570 P BQO 27 BQO H1 H1 H 0 1 N N N 105.810 86.937 67.323 -0.824 2.873 -0.786 H1 BQO 28 BQO H2 H2 H 0 1 N N N 105.052 87.773 68.720 -0.218 1.368 -1.518 H2 BQO 29 BQO H3 H3 H 0 1 N N N 108.800 88.514 71.684 4.503 3.292 -0.783 H3 BQO 30 BQO H4 H4 H 0 1 N N N 102.560 83.321 64.847 -5.455 -3.132 1.788 H4 BQO 31 BQO H5 H5 H 0 1 N N N 101.968 83.495 63.336 -4.295 -1.954 1.974 H5 BQO 32 BQO H7 H7 H 0 1 N N N 101.716 85.515 64.526 -6.538 -1.899 0.061 H7 BQO 33 BQO H8 H8 H 0 1 N N N 102.152 86.515 62.371 -4.620 -2.154 -1.682 H8 BQO 34 BQO H9 H9 H 0 1 N N N 104.756 85.280 64.748 -5.550 0.197 -0.729 H9 BQO 35 BQO H10 H10 H 0 1 N N N 104.525 87.488 65.875 -5.962 1.608 1.268 H10 BQO 36 BQO H11 H11 H 0 1 N N N 103.942 87.563 64.178 -7.181 0.317 1.135 H11 BQO 37 BQO H12 H12 H 0 1 N N N 102.762 87.477 65.530 -5.851 0.168 2.308 H12 BQO 38 BQO H13 H13 H 0 1 N N N 109.809 86.550 69.221 3.055 1.104 1.548 H13 BQO 39 BQO H14 H14 H 0 1 N N N 108.687 89.166 69.439 3.118 1.483 -1.499 H14 BQO 40 BQO H15 H15 H 0 1 N N N 106.614 85.797 69.915 0.496 2.322 1.294 H15 BQO 41 BQO H16 H16 H 0 1 N N N 106.524 88.696 69.373 1.500 3.175 -1.310 H16 BQO 42 BQO H17 H17 H 0 1 N N N 108.502 89.782 65.172 3.484 -2.792 -2.196 H17 BQO 43 BQO H18 H18 H 0 1 N N N 107.618 88.457 67.021 2.330 -0.727 -1.597 H18 BQO 44 BQO H19 H19 H 0 1 N N N 112.334 88.844 66.380 5.770 -2.411 1.271 H19 BQO 45 BQO H20 H20 H 0 1 N N N 106.861 88.664 71.677 2.859 4.493 0.183 H20 BQO 46 BQO H21 H21 H 0 1 N N N 105.615 82.829 67.381 -2.390 -0.931 -1.700 H21 BQO 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BQO O C DOUB N N 1 BQO C CA SING N N 2 BQO N CA SING N N 3 BQO CA CB SING N N 4 BQO O4 C4 DOUB N N 5 BQO CB CG2 SING N N 6 BQO CB OP1 SING N N 7 BQO C4 C5 SING N N 8 BQO C4 N3 SING N N 9 BQO C5 C6 DOUB N N 10 BQO OP1 P SING N N 11 BQO OP2 P DOUB N N 12 BQO N3 C2 SING N N 13 BQO C6 N1 SING N N 14 BQO P OP3 SING N N 15 BQO P "O5'" SING N N 16 BQO C2 N1 SING N N 17 BQO C2 O2 DOUB N N 18 BQO N1 "C1'" SING N N 19 BQO "O4'" "C1'" SING N N 20 BQO "O4'" C3 SING N N 21 BQO C1 "O5'" SING N N 22 BQO C1 C3 SING N N 23 BQO "C1'" "C2'" SING N N 24 BQO C3 "C3'" SING N N 25 BQO "C2'" "C3'" SING N N 26 BQO "C2'" O1 SING N N 27 BQO "C3'" "O3'" SING N N 28 BQO C1 H1 SING N N 29 BQO C1 H2 SING N N 30 BQO O1 H3 SING N N 31 BQO N H4 SING N N 32 BQO N H5 SING N N 33 BQO CA H7 SING N N 34 BQO C H8 SING N N 35 BQO CB H9 SING N N 36 BQO CG2 H10 SING N N 37 BQO CG2 H11 SING N N 38 BQO CG2 H12 SING N N 39 BQO "C1'" H13 SING N N 40 BQO "C2'" H14 SING N N 41 BQO C3 H15 SING N N 42 BQO "C3'" H16 SING N N 43 BQO C5 H17 SING N N 44 BQO C6 H18 SING N N 45 BQO N3 H19 SING N N 46 BQO "O3'" H20 SING N N 47 BQO OP3 H21 SING N N 48 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BQO InChI InChI 1.03 "InChI=1S/C13H20N3O10P/c1-6(7(14)4-17)26-27(22,23)24-5-8-10(19)11(20)12(25-8)16-3-2-9(18)15-13(16)21/h2-4,6-8,10-12,19-20H,5,14H2,1H3,(H,22,23)(H,15,18,21)/t6-,7-,8-,10-,11-,12-/m1/s1" BQO InChIKey InChI 1.03 MTUPUTQZEYXVLI-ZXIMEAKPSA-N BQO SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=O)NC2=O)[C@H](N)C=O" BQO SMILES CACTVS 3.385 "C[CH](O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=O)NC2=O)[CH](N)C=O" BQO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@H]([C@@H](C=O)N)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=O)NC2=O)O)O" BQO SMILES "OpenEye OEToolkits" 2.0.6 "CC(C(C=O)N)OP(=O)(O)OCC1C(C(C(O1)N2C=CC(=O)NC2=O)O)O" # _pdbx_chem_comp_identifier.comp_id BQO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S})-3-azanyl-4-oxidanylidene-butan-2-yl] [(2~{R},3~{S},4~{R},5~{R})-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BQO "Create component" 2019-03-04 PDBJ BQO "Initial release" 2019-03-20 RCSB ##