data_BRU # _chem_comp.id BRU _chem_comp.name "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H12 Br N2 O8 P" _chem_comp.mon_nstd_parent_comp_id DU _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces UBR _chem_comp.formula_weight 387.078 _chem_comp.one_letter_code U _chem_comp.three_letter_code BRU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1A35 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BRU N1 N1 N 0 1 N N N 24.773 -2.005 -6.345 0.527 -0.166 1.257 N1 BRU 1 BRU C2 C2 C 0 1 N N N 24.466 -0.683 -6.589 -0.000 -1.399 1.160 C2 BRU 2 BRU N3 N3 N 0 1 N N N 25.536 0.169 -6.539 -0.650 -1.958 2.198 N3 BRU 3 BRU C4 C4 C 0 1 N N N 26.848 -0.153 -6.277 -0.792 -1.280 3.355 C4 BRU 4 BRU C5 C5 C 0 1 N N N 27.111 -1.570 -6.058 -0.245 0.021 3.470 C5 BRU 5 BRU C6 C6 C 0 1 N N N 26.071 -2.414 -6.112 0.405 0.555 2.414 C6 BRU 6 BRU O2 O2 O 0 1 N N N 23.328 -0.293 -6.840 0.119 -2.023 0.123 O2 BRU 7 BRU O4 O4 O 0 1 N N N 27.691 0.737 -6.216 -1.384 -1.783 4.293 O4 BRU 8 BRU BR BR BR 0 0 N N N 29.072 -2.194 -5.660 -0.427 0.998 5.078 BR BRU 9 BRU "C1'" C1* C 0 1 N N R 23.655 -2.960 -6.316 1.234 0.413 0.112 "C1'" BRU 10 BRU "C2'" C2* C 0 1 N N N 23.863 -4.254 -7.080 2.445 -0.464 -0.271 "C2'" BRU 11 BRU "C3'" C3* C 0 1 N N S 22.871 -5.167 -6.379 2.484 -0.397 -1.815 "C3'" BRU 12 BRU "C4'" C4* C 0 1 N N R 22.914 -4.690 -4.930 1.290 0.512 -2.183 "C4'" BRU 13 BRU "O3'" O3* O 0 1 N N N 21.561 -4.951 -6.869 3.711 0.183 -2.260 "O3'" BRU 14 BRU "O4'" O4* O 0 1 N N N 23.450 -3.347 -4.966 0.388 0.407 -1.058 "O4'" BRU 15 BRU "C5'" C5* C 0 1 N N N 23.764 -5.574 -4.060 0.609 0.016 -3.460 "C5'" BRU 16 BRU "O5'" O5* O 0 1 N N N 24.924 -5.989 -4.791 -0.532 0.830 -3.737 "O5'" BRU 17 BRU P P P 0 1 N N N 25.889 -7.090 -4.180 -1.197 0.256 -5.086 P BRU 18 BRU OP1 O1P O 0 1 N N N 25.074 -8.325 -3.956 -1.595 -1.154 -4.878 OP1 BRU 19 BRU OP2 O2P O 0 1 N N N 27.148 -7.154 -4.999 -2.496 1.131 -5.459 OP2 BRU 20 BRU OP3 O3P O 0 1 N Y N 26.206 -6.481 -2.735 -0.129 0.340 -6.289 OP3 BRU 21 BRU HN3 HN3 H 0 1 N N N 25.333 1.152 -6.716 -1.021 -2.850 2.112 HN3 BRU 22 BRU H6 H6 H 0 1 N N N 26.291 -3.483 -5.959 0.829 1.546 2.483 H6 BRU 23 BRU "H1'" H1* H 0 1 N N N 22.805 -2.422 -6.798 1.558 1.428 0.341 "H1'" BRU 24 BRU "H2'" 1H2* H 0 1 N N N 23.747 -4.181 -8.186 2.294 -1.491 0.061 "H2'" BRU 25 BRU "H2''" 2H2* H 0 0 N N N 24.913 -4.625 -7.116 3.363 -0.056 0.151 "H2''" BRU 26 BRU "H3'" H3* H 0 1 N N N 23.118 -6.244 -6.522 2.354 -1.390 -2.244 "H3'" BRU 27 BRU "H4'" H4* H 0 1 N N N 21.892 -4.721 -4.484 1.624 1.542 -2.307 "H4'" BRU 28 BRU "HO3'" *HO3 H 0 0 N Y N 20.940 -5.521 -6.430 4.420 -0.410 -1.977 "HO3'" BRU 29 BRU "H5'" 1H5* H 0 1 N N N 24.027 -5.085 -3.092 1.309 0.077 -4.293 "H5'" BRU 30 BRU "H5''" 2H5* H 0 0 N N N 23.191 -6.439 -3.651 0.293 -1.017 -3.326 "H5''" BRU 31 BRU HOP2 2HOP H 0 0 N N N 27.725 -7.813 -4.633 -2.862 0.754 -6.271 HOP2 BRU 32 BRU HOP3 3HOP H 0 0 N N N 26.783 -7.140 -2.369 0.102 1.273 -6.391 HOP3 BRU 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 SING N N 1 BRU N1 C6 SING N N 2 BRU N1 "C1'" SING N N 3 BRU C2 N3 SING N N 4 BRU C2 O2 DOUB N N 5 BRU N3 C4 SING N N 6 BRU N3 HN3 SING N N 7 BRU C4 C5 SING N N 8 BRU C4 O4 DOUB N N 9 BRU C5 C6 DOUB N N 10 BRU C5 BR SING N N 11 BRU C6 H6 SING N N 12 BRU "C1'" "C2'" SING N N 13 BRU "C1'" "O4'" SING N N 14 BRU "C1'" "H1'" SING N N 15 BRU "C2'" "C3'" SING N N 16 BRU "C2'" "H2'" SING N N 17 BRU "C2'" "H2''" SING N N 18 BRU "C3'" "C4'" SING N N 19 BRU "C3'" "O3'" SING N N 20 BRU "C3'" "H3'" SING N N 21 BRU "C4'" "O4'" SING N N 22 BRU "C4'" "C5'" SING N N 23 BRU "C4'" "H4'" SING N N 24 BRU "O3'" "HO3'" SING N N 25 BRU "C5'" "O5'" SING N N 26 BRU "C5'" "H5'" SING N N 27 BRU "C5'" "H5''" SING N N 28 BRU "O5'" P SING N N 29 BRU P OP1 DOUB N N 30 BRU P OP2 SING N N 31 BRU P OP3 SING N N 32 BRU OP2 HOP2 SING N N 33 BRU OP3 HOP3 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BRU SMILES ACDLabs 10.04 "BrC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2)COP(=O)(O)O" BRU SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(Br)C(=O)NC2=O" BRU SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(Br)C(=O)NC2=O" BRU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)Br)COP(=O)(O)O)O" BRU SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=C(C(=O)NC2=O)Br)COP(=O)(O)O)O" BRU InChI InChI 1.03 "InChI=1S/C9H12BrN2O8P/c10-4-2-12(9(15)11-8(4)14)7-1-5(13)6(20-7)3-19-21(16,17)18/h2,5-7,13H,1,3H2,(H,11,14,15)(H2,16,17,18)/t5-,6+,7+/m0/s1" BRU InChIKey InChI 1.03 LHLHVDBXXZVYJT-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BRU "SYSTEMATIC NAME" ACDLabs 10.04 ;5-bromo-2'-deoxyuridine 5'-(dihydrogen phosphate) ; BRU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(5-bromo-2,4-dioxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BRU "Create component" 1999-07-08 EBI BRU "Modify descriptor" 2011-06-04 RCSB #