data_BST
#
_chem_comp.id BST
_chem_comp.name
;6-(4-AMINO-4-HYDROXY-2-OXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-3-[3-AMINO-5-(N-METHYL-GUANIDINO)-PENT
ANOYLAMINO]-3,6-DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H28 N8 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "TETRAHEDRAL INTERMEDIATE OF BLASTICIDIN S"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-07-30
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 440.454
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BST
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1WN6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BST O4 O4 O 0 1 N N N 46.699 17.262 36.298 -0.025 -3.307 0.498 O4 BST 1
BST N1 N1 N 0 1 N N N 43.455 14.725 38.711 4.741 0.297 0.586 N1 BST 2
BST C2 C2 C 0 1 N N N 42.478 13.701 38.358 4.939 0.577 -0.710 C2 BST 3
BST O2 O2 O 0 1 N N N 41.479 13.936 37.687 3.997 0.526 -1.476 O2 BST 4
BST N3 N3 N 0 1 N N N 42.706 12.384 38.820 6.153 0.923 -1.184 N3 BST 5
BST C4 C4 C 0 1 N N S 43.892 12.100 39.621 7.282 0.979 -0.241 C4 BST 6
BST C5 C5 C 0 1 N N N 44.885 13.215 39.961 6.990 0.645 1.207 C5 BST 7
BST C6 C6 C 0 1 N N N 44.623 14.435 39.501 5.751 0.326 1.534 C6 BST 8
BST "C1'" "C1'" C 0 1 N N R 43.193 16.108 38.203 3.390 -0.065 1.020 "C1'" BST 9
BST "C2'" "C2'" C 0 1 N N N 42.735 17.108 39.223 2.480 1.115 0.839 "C2'" BST 10
BST "C3'" "C3'" C 0 1 N N N 43.190 18.381 39.319 1.251 0.991 0.421 "C3'" BST 11
BST "C4'" "C4'" C 0 1 N N S 44.299 18.723 38.238 0.676 -0.363 0.092 "C4'" BST 12
BST "C5'" "C5'" C 0 1 N N S 44.365 17.780 37.000 1.591 -1.449 0.665 "C5'" BST 13
BST "O5'" "O5'" O 0 1 N N N 44.428 16.462 37.543 2.934 -1.178 0.254 "O5'" BST 14
BST O3 O3 O 0 1 N N N 45.453 18.587 35.004 1.901 -3.426 -0.578 O3 BST 15
BST "C6'" "C6'" C 0 1 N N N 45.632 17.791 36.140 1.167 -2.800 0.149 "C6'" BST 16
BST N6 N6 N 0 1 N N N 44.142 20.103 37.756 -0.659 -0.484 0.683 N6 BST 17
BST C7 C7 C 0 1 N N N 45.060 21.162 37.699 -1.735 -0.014 0.021 C7 BST 18
BST O7 O7 O 0 1 N N N 46.223 21.007 38.099 -1.598 0.510 -1.064 O7 BST 19
BST C8 C8 C 0 1 N N N 44.542 22.481 37.122 -3.108 -0.139 0.630 C8 BST 20
BST C9 C9 C 0 1 N N S 45.345 23.745 37.538 -4.143 0.468 -0.319 C9 BST 21
BST N9 N9 N 0 1 N N N 46.764 23.747 37.148 -4.194 -0.319 -1.558 N9 BST 22
BST C10 C10 C 0 1 N N N 44.693 25.039 36.953 -5.519 0.454 0.351 C10 BST 23
BST C11 C11 C 0 1 N N N 43.765 25.779 37.960 -6.530 1.174 -0.544 C11 BST 24
BST N12 N12 N 0 1 N N N 43.025 26.915 37.394 -7.847 1.160 0.097 N12 BST 25
BST C13 C13 C 0 1 N N N 43.732 28.198 37.287 -8.236 2.251 0.995 C13 BST 26
BST C14 C14 C 0 1 N N N 41.678 26.758 36.952 -8.718 0.124 -0.144 C14 BST 27
BST N14 N14 N 0 1 N N N 40.871 27.939 37.042 -8.372 -0.846 -0.942 N14 BST 28
BST N15 N15 N 0 1 N N N 41.129 25.678 36.491 -9.954 0.111 0.458 N15 BST 29
BST N4 N4 N 0 1 N N N 44.687 11.065 38.875 7.843 2.336 -0.287 N4 BST 30
BST O6 O6 O 0 1 N N N 43.362 11.525 40.798 8.287 0.076 -0.706 O6 BST 31
BST HO4 HO4 H 0 1 N N N 47.485 17.269 35.765 -0.297 -4.175 0.167 HO4 BST 32
BST HN3 HN3 H 0 1 N N N 42.032 11.657 38.581 6.279 1.128 -2.124 HN3 BST 33
BST H5 H5 H 0 1 N N N 45.813 13.137 40.552 7.773 0.667 1.951 H5 BST 34
BST H6 H6 H 0 1 N N N 45.369 15.201 39.773 5.520 0.085 2.561 H6 BST 35
BST "H1'" "H1'" H 0 1 N N N 42.312 16.123 37.520 3.414 -0.341 2.074 "H1'" BST 36
BST "H2'" "H2'" H 0 1 N N N 41.976 16.881 39.991 2.856 2.102 1.062 "H2'" BST 37
BST "H3'" "H3'" H 0 1 N N N 42.749 19.008 40.112 0.637 1.871 0.308 "H3'" BST 38
BST "H4'" "H4'" H 0 1 N N N 45.256 18.576 38.791 0.607 -0.477 -0.990 "H4'" BST 39
BST "H5'" "H5'" H 0 1 N N N 43.507 18.102 36.365 1.532 -1.438 1.753 "H5'" BST 40
BST HN6 HN6 H 0 1 N N N 43.228 20.376 37.395 -0.769 -0.903 1.551 HN6 BST 41
BST H81 1H8 H 0 1 N N N 43.463 22.612 37.372 -3.133 0.390 1.582 H81 BST 42
BST H82 2H8 H 0 1 N N N 44.479 22.415 36.011 -3.338 -1.192 0.793 H82 BST 43
BST H9 H9 H 0 1 N N N 45.308 23.725 38.652 -3.863 1.496 -0.552 H9 BST 44
BST HN91 1HN9 H 0 0 N N N 46.851 23.592 36.144 -3.249 -0.369 -1.909 HN91 BST 45
BST HN92 2HN9 H 0 0 N N N 47.291 24.577 37.421 -4.456 -1.257 -1.295 HN92 BST 46
BST H101 1H10 H 0 0 N N N 44.147 24.813 36.007 -5.460 0.963 1.313 H101 BST 47
BST H102 2H10 H 0 0 N N N 45.474 25.729 36.556 -5.838 -0.577 0.504 H102 BST 48
BST H111 1H11 H 0 0 N N N 44.346 26.103 38.855 -6.589 0.665 -1.507 H111 BST 49
BST H112 2H11 H 0 0 N N N 43.061 25.059 38.438 -6.211 2.205 -0.697 H112 BST 50
BST H131 1H13 H 0 0 N N N 44.678 28.052 36.715 -7.423 2.974 1.061 H131 BST 51
BST H132 2H13 H 0 0 N N N 43.170 29.060 36.857 -9.127 2.741 0.605 H132 BST 52
BST H133 3H13 H 0 0 N N N 44.135 28.482 38.287 -8.446 1.848 1.985 H133 BST 53
BST H14 H14 H 0 1 N N N 41.312 28.857 36.978 -8.986 -1.577 -1.112 H14 BST 54
BST H151 1H15 H 0 0 N N N 41.279 24.961 37.200 -10.211 0.833 1.053 H151 BST 55
BST H152 2H15 H 0 0 N N N 40.166 25.566 36.175 -10.568 -0.620 0.289 H152 BST 56
BST HN41 1HN4 H 0 0 N N N 44.906 11.341 37.918 8.030 2.539 -1.258 HN41 BST 57
BST HN42 2HN4 H 0 0 N N N 45.516 10.867 39.435 7.108 2.963 0.004 HN42 BST 58
BST HO6 HO6 H 0 1 N N N 44.134 11.340 41.320 8.460 0.303 -1.630 HO6 BST 59
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BST O4 "C6'" SING N N 1
BST O4 HO4 SING N N 2
BST N1 C2 SING N N 3
BST N1 C6 SING N N 4
BST N1 "C1'" SING N N 5
BST C2 O2 DOUB N N 6
BST C2 N3 SING N N 7
BST N3 C4 SING N N 8
BST N3 HN3 SING N N 9
BST C4 C5 SING N N 10
BST C4 N4 SING N N 11
BST C4 O6 SING N N 12
BST C5 C6 DOUB N N 13
BST C5 H5 SING N N 14
BST C6 H6 SING N N 15
BST "C1'" "C2'" SING N N 16
BST "C1'" "O5'" SING N N 17
BST "C1'" "H1'" SING N N 18
BST "C2'" "C3'" DOUB N N 19
BST "C2'" "H2'" SING N N 20
BST "C3'" "C4'" SING N N 21
BST "C3'" "H3'" SING N N 22
BST "C4'" "C5'" SING N N 23
BST "C4'" N6 SING N N 24
BST "C4'" "H4'" SING N N 25
BST "C5'" "O5'" SING N N 26
BST "C5'" "C6'" SING N N 27
BST "C5'" "H5'" SING N N 28
BST O3 "C6'" DOUB N N 29
BST N6 C7 SING N N 30
BST N6 HN6 SING N N 31
BST C7 O7 DOUB N N 32
BST C7 C8 SING N N 33
BST C8 C9 SING N N 34
BST C8 H81 SING N N 35
BST C8 H82 SING N N 36
BST C9 N9 SING N N 37
BST C9 C10 SING N N 38
BST C9 H9 SING N N 39
BST N9 HN91 SING N N 40
BST N9 HN92 SING N N 41
BST C10 C11 SING N N 42
BST C10 H101 SING N N 43
BST C10 H102 SING N N 44
BST C11 N12 SING N N 45
BST C11 H111 SING N N 46
BST C11 H112 SING N N 47
BST N12 C13 SING N N 48
BST N12 C14 SING N N 49
BST C13 H131 SING N N 50
BST C13 H132 SING N N 51
BST C13 H133 SING N N 52
BST C14 N14 DOUB N N 53
BST C14 N15 SING N N 54
BST N14 H14 SING N N 55
BST N15 H151 SING N N 56
BST N15 H152 SING N N 57
BST N4 HN41 SING N N 58
BST N4 HN42 SING N N 59
BST O6 HO6 SING N N 60
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BST SMILES ACDLabs 10.04 "O=C1NC(O)(N)C=CN1C2OC(C(=O)O)C(C=C2)NC(=O)CC(N)CCN(C(=[N@H])N)C"
BST SMILES_CANONICAL CACTVS 3.341 "CN(CC[C@H](N)CC(=O)N[C@H]1C=C[C@@H](O[C@@H]1C(O)=O)N2C=C[C@@](N)(O)NC2=O)C(N)=N"
BST SMILES CACTVS 3.341 "CN(CC[CH](N)CC(=O)N[CH]1C=C[CH](O[CH]1C(O)=O)N2C=C[C](N)(O)NC2=O)C(N)=N"
BST SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN(CC[C@@H](CC(=O)N[C@H]1C=C[C@@H](O[C@@H]1C(=O)O)N2C=C[C@@](NC2=O)(N)O)N)C(=N)N"
BST SMILES "OpenEye OEToolkits" 1.5.0 "CN(CCC(CC(=O)NC1C=CC(OC1C(=O)O)N2C=CC(NC2=O)(N)O)N)C(=N)N"
BST InChI InChI 1.03 "InChI=1S/C17H28N8O6/c1-24(15(19)20)6-4-9(18)8-11(26)22-10-2-3-12(31-13(10)14(27)28)25-7-5-17(21,30)23-16(25)29/h2-3,5,7,9-10,12-13,30H,4,6,8,18,21H2,1H3,(H3,19,20)(H,22,26)(H,23,29)(H,27,28)/t9-,10-,12+,13-,17-/m0/s1"
BST InChIKey InChI 1.03 MVFPGTZTOAHVBP-HXYLPHSESA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BST "SYSTEMATIC NAME" ACDLabs 10.04 "(4S)-4-amino-1-[4-({(3S)-3-amino-5-[carbamimidoyl(methyl)amino]pentanoyl}amino)-2,3,4-trideoxy-beta-D-erythro-hex-2-enopyranuronosyl]-4-hydroxy-3,4-dihydropyrimidin-2(1H)-one"
BST "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,6R)-3-[[(3S)-3-amino-5-(carbamimidoyl-methyl-amino)pentanoyl]amino]-6-[(4S)-4-amino-4-hydroxy-2-oxo-3H-pyrimidin-1-yl]-3,6-dihydro-2H-pyran-2-carboxylic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BST "Create component" 2004-07-30 RCSB
BST "Modify descriptor" 2011-06-04 RCSB
BST "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id BST
_pdbx_chem_comp_synonyms.name "TETRAHEDRAL INTERMEDIATE OF BLASTICIDIN S"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##