data_BTX # _chem_comp.id BTX _chem_comp.name "((2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXY-TETRAHYDROFURAN-2-YL)METHYL 5-((3AS,4S,6AR)-2-OXO-HEXAHYDRO-1H-THIENO[3,4-D]IMIDAZOL-4-YL)PENTYL HYDROGEN PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H30 N7 O8 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms BIOTINOL-5-AMP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-12-05 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 559.533 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BTX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2EWN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BTX P P P 0 1 N N R 2.454 44.515 -28.820 0.204 -1.930 0.035 P BTX 1 BTX O1P O1P O 0 1 N N N 3.530 43.665 -28.192 0.171 -1.359 1.400 O1P BTX 2 BTX O2P O2P O 0 1 N N N 1.977 45.644 -27.874 -0.071 -3.514 0.109 O2P BTX 3 BTX "O5'" O5* O 0 1 N N N 1.193 43.599 -29.315 1.650 -1.667 -0.622 "O5'" BTX 4 BTX "C5'" C5* C 0 1 N N N 0.411 42.810 -28.473 2.618 -2.207 0.280 "C5'" BTX 5 BTX "C4'" C4* C 0 1 N N R -0.874 42.443 -29.013 4.022 -1.989 -0.288 "C4'" BTX 6 BTX "O4'" O4* O 0 1 N N N -1.269 43.023 -30.226 4.337 -0.580 -0.325 "O4'" BTX 7 BTX "C3'" C3* C 0 1 N N S -1.024 41.048 -29.306 5.085 -2.607 0.647 "C3'" BTX 8 BTX "O3'" O3* O 0 1 N N N -0.754 40.083 -28.317 5.482 -3.895 0.172 "O3'" BTX 9 BTX "C2'" C2* C 0 1 N N R -2.400 41.014 -29.871 6.269 -1.614 0.578 "C2'" BTX 10 BTX "O2'" O2* O 0 1 N N N -3.311 40.919 -28.814 7.435 -2.259 0.061 "O2'" BTX 11 BTX "C1'" C1* C 0 1 N N R -2.469 42.311 -30.683 5.778 -0.513 -0.388 "C1'" BTX 12 BTX N9 N9 N 0 1 Y N N -2.366 42.236 -32.157 6.248 0.802 0.055 N9 BTX 13 BTX C8 C8 C 0 1 Y N N -1.727 41.299 -32.937 5.567 1.676 0.849 C8 BTX 14 BTX N7 N7 N 0 1 Y N N -1.860 41.643 -34.233 6.279 2.747 1.045 N7 BTX 15 BTX C5 C5 C 0 1 Y N N -2.596 42.799 -34.297 7.462 2.626 0.395 C5 BTX 16 BTX C6 C6 C 0 1 Y N N -2.984 43.571 -35.395 8.594 3.445 0.242 C6 BTX 17 BTX N6 N6 N 0 1 N N N -2.656 43.209 -36.654 8.657 4.686 0.851 N6 BTX 18 BTX N1 N1 N 0 1 Y N N -3.752 44.749 -35.118 9.604 2.998 -0.497 N1 BTX 19 BTX C2 C2 C 0 1 Y N N -4.094 45.144 -33.819 9.552 1.815 -1.081 C2 BTX 20 BTX N3 N3 N 0 1 Y N N -3.677 44.348 -32.733 8.511 1.017 -0.971 N3 BTX 21 BTX C4 C4 C 0 1 Y N N -2.918 43.197 -33.007 7.454 1.379 -0.252 C4 BTX 22 BTX CBB C11B C 0 1 N N N 3.850 45.857 -30.540 -2.169 -1.396 -0.175 CBB BTX 23 BTX OBB O11B O 0 1 N N N 2.870 45.105 -30.115 -0.931 -1.230 -0.868 OBB BTX 24 BTX CAB C10B C 0 1 N N N 3.906 46.064 -32.032 -3.296 -0.749 -0.983 CAB BTX 25 BTX C9B C9B C 0 1 N N N 3.881 44.889 -33.013 -4.623 -0.926 -0.242 C9B BTX 26 BTX C8B C8B C 0 1 N N N 4.952 45.058 -34.083 -5.749 -0.280 -1.050 C8B BTX 27 BTX C7B C7B C 0 1 N N N 4.493 44.648 -35.477 -7.076 -0.457 -0.309 C7B BTX 28 BTX C2B C2B C 0 1 N N S 5.482 44.942 -36.616 -8.202 0.189 -1.117 C2B BTX 29 BTX S1B S1B S 0 1 N N N 4.974 44.255 -38.198 -8.050 2.029 -1.112 S1B BTX 30 BTX C6B C6B C 0 1 N N N 6.500 44.807 -38.922 -9.849 2.415 -1.252 C6B BTX 31 BTX C5B C5B C 0 1 N N R 7.526 44.372 -37.863 -10.476 1.224 -0.495 C5B BTX 32 BTX N1B N1B N 0 1 N N N 7.912 42.952 -37.979 -10.681 1.603 0.912 N1B BTX 33 BTX C3B C3B C 0 1 N N N 7.637 42.293 -36.823 -10.010 0.748 1.696 C3B BTX 34 BTX O3B O3B O 0 1 N N N 7.871 41.066 -36.606 -10.004 0.826 2.909 O3B BTX 35 BTX N2B N2B N 0 1 N N N 7.075 43.136 -35.890 -9.347 -0.201 1.021 N2B BTX 36 BTX C4B C4B C 0 1 N N S 6.947 44.473 -36.430 -9.567 -0.006 -0.422 C4B BTX 37 BTX H2P H2P H 0 1 N N N 1.879 45.300 -26.994 -0.041 -3.846 -0.799 H2P BTX 38 BTX "H5'1" 1H5* H 0 0 N N N 0.213 43.412 -27.574 2.440 -3.275 0.408 "H5'1" BTX 39 BTX "H5'2" 2H5* H 0 0 N N N 0.967 41.883 -28.270 2.535 -1.706 1.244 "H5'2" BTX 40 BTX "H4'" H4* H 0 1 N N N -1.483 42.811 -28.174 4.098 -2.421 -1.286 "H4'" BTX 41 BTX "H3'" H3* H 0 1 N N N -0.222 40.710 -29.979 4.703 -2.677 1.665 "H3'" BTX 42 BTX H3 H3 H 0 1 N N N -0.693 39.225 -28.720 6.144 -4.230 0.793 H3 BTX 43 BTX H1 H1 H 0 1 N N N -2.644 40.158 -30.517 6.472 -1.193 1.563 H1 BTX 44 BTX "H2'" H2* H 0 1 N N N -2.839 40.897 -27.990 7.655 -2.973 0.676 "H2'" BTX 45 BTX "H1'" H1* H 0 1 N N N -3.463 42.751 -30.518 6.123 -0.717 -1.402 "H1'" BTX 46 BTX H8 H8 H 0 1 N N N -1.204 40.429 -32.570 4.581 1.505 1.256 H8 BTX 47 BTX HN61 1HN6 H 0 0 N N N -2.898 43.702 -37.490 9.445 5.241 0.741 HN61 BTX 48 BTX HN62 2HN6 H 0 0 N N N -2.129 42.361 -36.603 7.911 5.003 1.384 HN62 BTX 49 BTX H4 H4 H 0 1 N N N -4.668 46.044 -33.652 10.396 1.490 -1.673 H4 BTX 50 BTX H111 1H11 H 0 0 N N N 4.778 45.333 -30.268 -2.376 -2.458 -0.050 H111 BTX 51 BTX H112 2H11 H 0 0 N N N 3.736 46.846 -30.072 -2.105 -0.920 0.804 H112 BTX 52 BTX H101 1H10 H 0 0 N N N 4.914 46.479 -32.179 -3.089 0.314 -1.109 H101 BTX 53 BTX H102 2H10 H 0 0 N N N 3.023 46.672 -32.278 -3.360 -1.224 -1.962 H102 BTX 54 BTX H9B1 1H9B H 0 0 N N N 2.895 44.855 -33.500 -4.829 -1.989 -0.117 H9B1 BTX 55 BTX H9B2 2H9B H 0 0 N N N 4.069 43.956 -32.461 -4.558 -0.451 0.737 H9B2 BTX 56 BTX H8B1 1H8B H 0 0 N N N 5.790 44.399 -33.810 -5.543 0.783 -1.176 H8B1 BTX 57 BTX H8B2 2H8B H 0 0 N N N 5.238 46.120 -34.116 -5.813 -0.755 -2.029 H8B2 BTX 58 BTX H7B1 1H7B H 0 0 N N N 3.596 45.248 -35.691 -7.282 -1.520 -0.184 H7B1 BTX 59 BTX H7B2 2H7B H 0 0 N N N 4.321 43.562 -35.462 -7.011 0.018 0.670 H7B2 BTX 60 BTX H2B H2B H 0 1 N N N 5.458 46.041 -36.593 -8.223 -0.199 -2.136 H2B BTX 61 BTX H6B1 1H6B H 0 0 N N N 6.521 45.885 -39.142 -10.086 3.359 -0.761 H6B1 BTX 62 BTX H6B2 2H6B H 0 0 N N N 6.689 44.337 -39.899 -10.167 2.428 -2.294 H6B2 BTX 63 BTX H5B H5B H 0 1 N N N 8.380 45.044 -38.036 -11.428 0.951 -0.951 H5B BTX 64 BTX H1B H1B H 0 1 N N N 8.318 42.535 -38.792 -11.215 2.351 1.222 H1B BTX 65 BTX H2 H2 H 0 1 N N N 6.795 42.863 -34.970 -8.809 -0.903 1.418 H2 BTX 66 BTX H4B H4B H 0 1 N N N 7.441 45.175 -35.742 -10.075 -0.874 -0.842 H4B BTX 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BTX P O1P DOUB N N 1 BTX P O2P SING N N 2 BTX P "O5'" SING N N 3 BTX P OBB SING N N 4 BTX O2P H2P SING N N 5 BTX "O5'" "C5'" SING N N 6 BTX "C5'" "C4'" SING N N 7 BTX "C5'" "H5'1" SING N N 8 BTX "C5'" "H5'2" SING N N 9 BTX "C4'" "O4'" SING N N 10 BTX "C4'" "C3'" SING N N 11 BTX "C4'" "H4'" SING N N 12 BTX "O4'" "C1'" SING N N 13 BTX "C3'" "O3'" SING N N 14 BTX "C3'" "C2'" SING N N 15 BTX "C3'" "H3'" SING N N 16 BTX "O3'" H3 SING N N 17 BTX "C2'" "O2'" SING N N 18 BTX "C2'" "C1'" SING N N 19 BTX "C2'" H1 SING N N 20 BTX "O2'" "H2'" SING N N 21 BTX "C1'" N9 SING N N 22 BTX "C1'" "H1'" SING N N 23 BTX N9 C8 SING Y N 24 BTX N9 C4 SING Y N 25 BTX C8 N7 DOUB Y N 26 BTX C8 H8 SING N N 27 BTX N7 C5 SING Y N 28 BTX C5 C6 SING Y N 29 BTX C5 C4 DOUB Y N 30 BTX C6 N6 SING N N 31 BTX C6 N1 DOUB Y N 32 BTX N6 HN61 SING N N 33 BTX N6 HN62 SING N N 34 BTX N1 C2 SING Y N 35 BTX C2 N3 DOUB Y N 36 BTX C2 H4 SING N N 37 BTX N3 C4 SING Y N 38 BTX CBB OBB SING N N 39 BTX CBB CAB SING N N 40 BTX CBB H111 SING N N 41 BTX CBB H112 SING N N 42 BTX CAB C9B SING N N 43 BTX CAB H101 SING N N 44 BTX CAB H102 SING N N 45 BTX C9B C8B SING N N 46 BTX C9B H9B1 SING N N 47 BTX C9B H9B2 SING N N 48 BTX C8B C7B SING N N 49 BTX C8B H8B1 SING N N 50 BTX C8B H8B2 SING N N 51 BTX C7B C2B SING N N 52 BTX C7B H7B1 SING N N 53 BTX C7B H7B2 SING N N 54 BTX C2B S1B SING N N 55 BTX C2B C4B SING N N 56 BTX C2B H2B SING N N 57 BTX S1B C6B SING N N 58 BTX C6B C5B SING N N 59 BTX C6B H6B1 SING N N 60 BTX C6B H6B2 SING N N 61 BTX C5B N1B SING N N 62 BTX C5B C4B SING N N 63 BTX C5B H5B SING N N 64 BTX N1B C3B SING N N 65 BTX N1B H1B SING N N 66 BTX C3B O3B DOUB N N 67 BTX C3B N2B SING N N 68 BTX N2B C4B SING N N 69 BTX N2B H2 SING N N 70 BTX C4B H4B SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BTX SMILES ACDLabs 10.04 "O=C1NC2C(SCC2N1)CCCCCOP(=O)(O)OCC5OC(n3c4ncnc(N)c4nc3)C(O)C5O" BTX SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P@@](O)(=O)OCCCCC[C@@H]4SC[C@@H]5NC(=O)N[C@H]45)[C@@H](O)[C@H]3O" BTX SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OCCCCC[CH]4SC[CH]5NC(=O)N[CH]45)[CH](O)[CH]3O" BTX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@](=O)(O)OCCCCC[C@H]4[C@@H]5[C@H](CS4)NC(=O)N5)O)O)N" BTX SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OCCCCCC4C5C(CS4)NC(=O)N5)O)O)N" BTX InChI InChI 1.03 "InChI=1S/C20H30N7O8PS/c21-17-14-18(23-8-22-17)27(9-24-14)19-16(29)15(28)11(35-19)6-34-36(31,32)33-5-3-1-2-4-12-13-10(7-37-12)25-20(30)26-13/h8-13,15-16,19,28-29H,1-7H2,(H,31,32)(H2,21,22,23)(H2,25,26,30)/t10-,11+,12-,13-,15+,16+,19+/m0/s1" BTX InChIKey InChI 1.03 KBOGUFFJCBPJEH-SQGSUPJISA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BTX "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(R)-hydroxy({5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentyl}oxy)phosphoryl]adenosine" BTX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentyl [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BTX "Create component" 2005-12-05 RCSB BTX "Modify descriptor" 2011-06-04 RCSB BTX "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BTX _pdbx_chem_comp_synonyms.name BIOTINOL-5-AMP _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##