data_BUK
#
_chem_comp.id BUK
_chem_comp.name "N~2~-({[(1R)-1-(4-BROMOPHENYL)ETHYL]AMINO}CARBONYL)ASPARAGINYL-N~1~-{4-{[AMINO(IMINO)METHYL]AMINO}-1-[2,3-DIHYDRO-1,3-THIAZOL-2-YL(HYDROXY)METHYL]BUTYL}VALINAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H42 Br N9 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "N-((R)-1-(4-BROMOPHENYL)ETHYL)UREA-ASN-VAL-ARG-ALPHA-KETOTHIAZOLE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-06-09
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 684.649
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BUK
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ZPZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BUK CX CX C 0 1 N N S N N N -1.005 20.649 7.148 -6.619 -1.446 -1.070 CX BUK 1
BUK CY CY C 0 1 N N S N N N -1.213 19.644 8.313 -5.806 -0.292 -0.480 CY BUK 2
BUK CZ CZ C 0 1 N N S N N N -0.307 21.923 7.630 -7.989 -1.504 -0.391 CZ BUK 3
BUK OX OX O 0 1 N N N N N N -0.209 19.984 6.157 -6.792 -1.238 -2.474 OX BUK 4
BUK N02 N02 N 0 1 N N N N N N -2.067 20.295 9.322 -4.463 -0.291 -1.065 N02 BUK 5
BUK C06 C06 C 0 1 N N N N N N -1.913 18.348 7.849 -6.500 1.035 -0.796 C06 BUK 6
BUK C07 C07 C 0 1 N N N N N N -2.232 17.408 9.021 -5.757 2.177 -0.101 C07 BUK 7
BUK C08 C08 C 0 1 N N N N N N -2.806 16.086 8.558 -6.451 3.504 -0.417 C08 BUK 8
BUK N09 N09 N 0 1 N N N N N N -2.803 15.180 9.704 -5.739 4.598 0.248 N09 BUK 9
BUK C10 C10 C 0 1 N N N N N N -3.104 13.879 9.722 -6.182 5.892 0.109 C10 BUK 10
BUK N11 N11 N 0 1 N N N N N N -3.836 13.313 8.751 -5.514 6.919 0.733 N11 BUK 11
BUK NP2 NP2 N 0 1 N N N N N N -2.644 13.153 10.732 -7.236 6.145 -0.615 NP2 BUK 12
BUK N13 N13 N 0 1 N N N N N N -0.985 22.992 7.839 -8.770 -2.670 -0.857 N13 BUK 13
BUK C14 C14 C 0 1 N N N N N N -0.133 24.006 8.277 -9.092 -3.594 0.112 C14 BUK 14
BUK C15 C15 C 0 1 N N N N N N 1.191 23.589 8.366 -8.732 -3.453 1.377 C15 BUK 15
BUK S16 S16 S 0 1 N N N N N N 1.397 21.958 7.912 -7.831 -1.910 1.396 S16 BUK 16
BUK N17 N17 N 0 1 N N N N N N -2.651 20.856 12.790 -1.147 -1.344 0.002 N17 BUK 17
BUK C18 C18 C 0 1 N N S N N N -2.814 21.386 11.400 -2.088 -0.980 -1.061 C18 BUK 18
BUK C19 C19 C 0 1 N N N N N N -1.703 20.750 10.522 -3.498 -1.068 -0.536 C19 BUK 19
BUK O20 O20 O 0 1 N N N N N N -0.536 20.676 10.936 -3.763 -1.839 0.362 O20 BUK 20
BUK C21 C21 C 0 1 N N N N N N -2.710 22.945 11.349 -1.921 -1.941 -2.240 C21 BUK 21
BUK C22 C22 C 0 1 N N N N N N -4.009 23.586 11.872 -2.856 -1.521 -3.376 C22 BUK 22
BUK C23 C23 C 0 1 N N N N N N -1.530 23.489 12.185 -0.472 -1.900 -2.730 C23 BUK 23
BUK N24 N24 N 0 1 N N N N N N -1.714 20.105 15.252 2.384 -0.630 0.802 N24 BUK 24
BUK C25 C25 C 0 1 N N S N N N -2.544 19.123 14.586 1.085 -1.255 1.064 C25 BUK 25
BUK C26 C26 C 0 1 N N N N N N -2.732 19.541 13.130 0.118 -0.881 -0.030 C26 BUK 26
BUK O27 O27 O 0 1 N N N N N N -2.957 18.657 12.312 0.478 -0.162 -0.938 O27 BUK 27
BUK C28 C28 C 0 1 N N N N N N -3.905 19.033 15.305 0.546 -0.767 2.410 C28 BUK 28
BUK C29 C29 C 0 1 N N N N N N -3.771 18.593 16.778 0.439 0.736 2.394 C29 BUK 29
BUK O30 O30 O 0 1 N N N N N N -2.668 18.342 17.286 0.695 1.351 1.380 O30 BUK 30
BUK N31 N31 N 0 1 N N N N N N -4.884 18.484 17.494 0.060 1.397 3.505 N31 BUK 31
BUK C32 C32 C 0 1 N N N N N N -0.379 20.057 15.312 3.510 -1.184 1.293 C32 BUK 32
BUK O33 O33 O 0 1 N N N N N N 0.261 19.121 14.774 3.459 -2.252 1.873 O33 BUK 33
BUK N34 N34 N 0 1 N N N N N N 0.212 21.077 15.980 4.692 -0.556 1.141 N34 BUK 34
BUK C35 C35 C 0 1 N N R N N N 1.652 21.282 16.185 5.916 -1.159 1.674 C35 BUK 35
BUK C36 C36 C 0 1 Y N N N N N 2.334 21.426 14.821 7.105 -0.654 0.898 C36 BUK 36
BUK C37 C37 C 0 1 Y N N N N N 3.602 20.796 14.584 7.164 0.672 0.510 C37 BUK 37
BUK C38 C38 C 0 1 Y N N N N N 4.247 20.932 13.325 8.256 1.137 -0.198 C38 BUK 38
BUK C39 C39 C 0 1 Y N N N N N 3.639 21.699 12.281 9.286 0.274 -0.526 C39 BUK 39
BUK C40 C40 C 0 1 Y N N N N N 2.385 22.327 12.499 9.224 -1.054 -0.142 C40 BUK 40
BUK C41 C41 C 0 1 Y N N N N N 1.732 22.199 13.751 8.134 -1.517 0.570 C41 BUK 41
BUK BR BR BR 0 0 N N N N N N 4.493 21.893 10.633 10.777 0.908 -1.501 BR BUK 42
BUK C43 C43 C 0 1 N N N N N N 1.859 22.542 17.052 6.071 -0.779 3.149 C43 BUK 43
BUK HX HX H 0 1 N N N N N N -1.976 20.957 6.733 -6.091 -2.384 -0.904 HX BUK 44
BUK HY HY H 0 1 N N N N N N -0.226 19.370 8.715 -5.732 -0.415 0.600 HY BUK 45
BUK HZ HZ H 0 1 N N N N N N -0.394 20.955 7.115 -8.540 -0.575 -0.539 HZ BUK 46
BUK HOX HOX H 0 1 N N N N N N -0.731 19.837 5.377 -5.907 -1.208 -2.862 HOX BUK 47
BUK H02 H02 H 0 1 N N N N N N -3.030 20.409 9.079 -4.269 0.268 -1.833 H02 BUK 48
BUK H061 1H06 H 0 0 N N N N N N -1.230 17.820 7.167 -6.496 1.200 -1.873 H061 BUK 49
BUK H062 2H06 H 0 0 N N N N N N -2.856 18.618 7.351 -7.529 1.001 -0.438 H062 BUK 50
BUK H071 1H07 H 0 0 N N N N N N -2.985 17.900 9.654 -5.761 2.012 0.976 H071 BUK 51
BUK H072 2H07 H 0 0 N N N N N N -1.302 17.211 9.574 -4.728 2.212 -0.459 H072 BUK 52
BUK H081 1H08 H 0 0 N N N N N N -2.205 15.671 7.736 -6.446 3.669 -1.494 H081 BUK 53
BUK H082 2H08 H 0 0 N N N N N N -3.833 16.227 8.190 -7.480 3.470 -0.059 H082 BUK 54
BUK H09 H09 H 0 1 N N N N N N -2.544 15.583 10.582 -4.954 4.410 0.787 H09 BUK 55
BUK H111 1H11 H 0 0 N N N N N N -4.205 13.801 7.960 -4.730 6.730 1.272 H111 BUK 56
BUK H112 2H11 H 0 0 N N N N N N -3.962 12.337 8.926 -5.827 7.832 0.634 H112 BUK 57
BUK HP2 HP2 H 0 1 N N N N N N -2.116 13.720 11.364 -7.549 7.058 -0.714 HP2 BUK 58
BUK H13 H13 H 0 1 N N N N N N -1.431 23.275 6.990 -9.037 -2.778 -1.784 H13 BUK 59
BUK H14 H14 H 0 1 N N N N N N -0.465 25.005 8.520 -9.662 -4.467 -0.171 H14 BUK 60
BUK H15 H15 H 0 1 N N N N N N 2.000 24.228 8.687 -8.935 -4.116 2.205 H15 BUK 61
BUK H17 H17 H 0 1 N N N N N N -2.470 21.515 13.520 -1.435 -1.918 0.729 H17 BUK 62
BUK H18 H18 H 0 1 N N N N N N -3.816 21.124 11.028 -1.886 0.039 -1.391 H18 BUK 63
BUK H21 H21 H 0 1 N N N N N N -2.541 23.209 10.295 -2.169 -2.953 -1.921 H21 BUK 64
BUK H221 1H22 H 0 0 N N N N N N -4.858 22.922 11.655 -2.665 -2.142 -4.251 H221 BUK 65
BUK H222 2H22 H 0 0 N N N N N N -4.165 24.555 11.376 -3.891 -1.646 -3.060 H222 BUK 66
BUK H223 3H22 H 0 0 N N N N N N -3.931 23.739 12.959 -2.676 -0.475 -3.626 H223 BUK 67
BUK H231 1H23 H 0 0 N N N N N N -1.292 22.777 12.989 -0.224 -0.888 -3.049 H231 BUK 68
BUK H232 2H23 H 0 0 N N N N N N -1.808 24.459 12.624 0.194 -2.200 -1.921 H232 BUK 69
BUK H233 3H23 H 0 0 N N N N N N -0.650 23.618 11.538 -0.353 -2.585 -3.570 H233 BUK 70
BUK H24 H24 H 0 1 N N N N N N -2.172 20.874 15.699 2.433 0.183 0.275 H24 BUK 71
BUK H25 H25 H 0 1 N N N N N N -2.065 18.133 14.617 1.202 -2.338 1.090 H25 BUK 72
BUK H281 1H28 H 0 0 N N N N N N -4.509 18.276 14.783 -0.439 -1.199 2.586 H281 BUK 73
BUK H282 2H28 H 0 0 N N N N N N -4.378 20.026 15.280 1.225 -1.074 3.206 H282 BUK 74
BUK H311 1H31 H 0 0 N N N N N N -5.814 18.661 17.171 -0.144 0.905 4.316 H311 BUK 75
BUK H312 2H31 H 0 0 N N N N N N -4.625 18.193 18.415 -0.008 2.365 3.495 H312 BUK 76
BUK H34 H34 H 0 1 N N N N N N -0.397 21.764 16.376 4.733 0.295 0.678 H34 BUK 77
BUK H35 H35 H 0 1 N N N N N N 2.099 20.423 16.707 5.857 -2.243 1.583 H35 BUK 78
BUK H37 H37 H 0 1 N N N N N N 4.068 20.216 15.367 6.360 1.346 0.766 H37 BUK 79
BUK H38 H38 H 0 1 N N N N N N 5.201 20.454 13.155 8.305 2.174 -0.497 H38 BUK 80
BUK H40 H40 H 0 1 N N N N N N 1.927 22.904 11.709 10.028 -1.728 -0.398 H40 BUK 81
BUK H41 H41 H 0 1 N N N N N N 0.779 22.681 13.909 8.085 -2.553 0.870 H41 BUK 82
BUK H431 1H43 H 0 0 N N N N N N 1.018 23.234 16.899 6.130 0.305 3.240 H431 BUK 83
BUK H432 2H43 H 0 0 N N N N N N 2.798 23.036 16.762 5.211 -1.145 3.710 H432 BUK 84
BUK H433 3H43 H 0 0 N N N N N N 1.908 22.254 18.112 6.982 -1.228 3.546 H433 BUK 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BUK CX CY SING N N 1
BUK CX CZ SING N N 2
BUK CX OX SING N N 3
BUK CX HX SING N N 4
BUK CY N02 SING N N 5
BUK CY C06 SING N N 6
BUK CY HY SING N N 7
BUK CZ N13 SING N N 8
BUK CZ S16 SING N N 9
BUK CZ HZ SING N N 10
BUK OX HOX SING N N 11
BUK N02 C19 SING N N 12
BUK N02 H02 SING N N 13
BUK C06 C07 SING N N 14
BUK C06 H061 SING N N 15
BUK C06 H062 SING N N 16
BUK C07 C08 SING N N 17
BUK C07 H071 SING N N 18
BUK C07 H072 SING N N 19
BUK C08 N09 SING N N 20
BUK C08 H081 SING N N 21
BUK C08 H082 SING N N 22
BUK N09 C10 SING N N 23
BUK N09 H09 SING N N 24
BUK C10 N11 SING N N 25
BUK C10 NP2 DOUB N Z 26
BUK N11 H111 SING N N 27
BUK N11 H112 SING N N 28
BUK NP2 HP2 SING N N 29
BUK N13 C14 SING N N 30
BUK N13 H13 SING N N 31
BUK C14 C15 DOUB N N 32
BUK C14 H14 SING N N 33
BUK C15 S16 SING N N 34
BUK C15 H15 SING N N 35
BUK N17 C18 SING N N 36
BUK N17 C26 SING N N 37
BUK N17 H17 SING N N 38
BUK C18 C19 SING N N 39
BUK C18 C21 SING N N 40
BUK C18 H18 SING N N 41
BUK C19 O20 DOUB N N 42
BUK C21 C22 SING N N 43
BUK C21 C23 SING N N 44
BUK C21 H21 SING N N 45
BUK C22 H221 SING N N 46
BUK C22 H222 SING N N 47
BUK C22 H223 SING N N 48
BUK C23 H231 SING N N 49
BUK C23 H232 SING N N 50
BUK C23 H233 SING N N 51
BUK N24 C25 SING N N 52
BUK N24 C32 SING N N 53
BUK N24 H24 SING N N 54
BUK C25 C26 SING N N 55
BUK C25 C28 SING N N 56
BUK C25 H25 SING N N 57
BUK C26 O27 DOUB N N 58
BUK C28 C29 SING N N 59
BUK C28 H281 SING N N 60
BUK C28 H282 SING N N 61
BUK C29 O30 DOUB N N 62
BUK C29 N31 SING N N 63
BUK N31 H311 SING N N 64
BUK N31 H312 SING N N 65
BUK C32 O33 DOUB N N 66
BUK C32 N34 SING N N 67
BUK N34 C35 SING N N 68
BUK N34 H34 SING N N 69
BUK C35 C36 SING N N 70
BUK C35 C43 SING N N 71
BUK C35 H35 SING N N 72
BUK C36 C37 SING Y N 73
BUK C36 C41 DOUB Y N 74
BUK C37 C38 DOUB Y N 75
BUK C37 H37 SING N N 76
BUK C38 C39 SING Y N 77
BUK C38 H38 SING N N 78
BUK C39 C40 DOUB Y N 79
BUK C39 BR SING N N 80
BUK C40 C41 SING Y N 81
BUK C40 H40 SING N N 82
BUK C41 H41 SING N N 83
BUK C43 H431 SING N N 84
BUK C43 H432 SING N N 85
BUK C43 H433 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BUK SMILES ACDLabs 10.04 "Brc1ccc(cc1)C(NC(=O)NC(C(=O)NC(C(=O)NC(C(O)C2SC=CN2)CCCNC(=[N@H])N)C(C)C)CC(=O)N)C"
BUK SMILES_CANONICAL CACTVS 3.341 "CC(C)[C@H](NC(=O)[C@H](CC(N)=O)NC(=O)N[C@H](C)c1ccc(Br)cc1)C(=O)N[C@@H](CCCNC(N)=N)[C@H](O)[C@H]2NC=CS2"
BUK SMILES CACTVS 3.341 "CC(C)[CH](NC(=O)[CH](CC(N)=O)NC(=O)N[CH](C)c1ccc(Br)cc1)C(=O)N[CH](CCCNC(N)=N)[CH](O)[CH]2NC=CS2"
BUK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(/N)\NCCC[C@@H]([C@@H](C1NC=CS1)O)NC(=O)[C@H](C(C)C)NC(=O)[C@H](CC(=O)N)NC(=O)N[C@H](C)c2ccc(cc2)Br"
BUK SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(N)NCCCC(C(C1NC=CS1)O)NC(=O)C(C(C)C)NC(=O)C(CC(=O)N)NC(=O)NC(C)c2ccc(cc2)Br"
BUK InChI InChI 1.03 "InChI=1S/C27H42BrN9O5S/c1-14(2)21(24(41)35-18(5-4-10-33-26(30)31)22(39)25-32-11-12-43-25)37-23(40)19(13-20(29)38)36-27(42)34-15(3)16-6-8-17(28)9-7-16/h6-9,11-12,14-15,18-19,21-22,25,32,39H,4-5,10,13H2,1-3H3,(H2,29,38)(H,35,41)(H,37,40)(H4,30,31,33)(H2,34,36,42)/t15-,18+,19+,21+,22+,25+/m1/s1"
BUK InChIKey InChI 1.03 JOESWSPHHQIQBV-JJYDKGGZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BUK "SYSTEMATIC NAME" ACDLabs 10.04 "N~2~-{[(1R)-1-(4-bromophenyl)ethyl]carbamoyl}-L-asparaginyl-N-{(1S)-4-carbamimidamido-1-[(S)-(2S)-2,3-dihydro-1,3-thiazol-2-yl(hydroxy)methyl]butyl}-L-valinamide"
BUK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(1R)-1-(4-bromophenyl)ethyl]carbamoylamino]-N-[(2S)-1-[[(1S,2S)-5-carbamimidamido-1-(2,3-dihydro-1,3-thiazol-2-yl)-1-hydroxy-pentan-2-yl]amino]-3-methyl-1-oxo-butan-2-yl]butanediamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BUK "Create component" 2005-06-09 RCSB
BUK "Modify descriptor" 2011-06-04 RCSB
BUK "Modify synonyms" 2021-03-01 PDBE
BUK "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id BUK
_pdbx_chem_comp_synonyms.name "N-((R)-1-(4-BROMOPHENYL)ETHYL)UREA-ASN-VAL-ARG-ALPHA-KETOTHIAZOLE"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id BUK
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom CX
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#