data_BVD # _chem_comp.id BVD _chem_comp.name 5-BROMOVINYLDEOXYURIDINE _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H13 Br N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 333.135 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BVD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1KI8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BVD "O5'" O5* O 0 1 N N N 49.962 82.126 52.892 -1.405 2.285 5.403 "O5'" BVD 1 BVD "C5'" C5* C 0 1 N N N 50.804 83.282 52.944 -0.444 1.229 5.453 "C5'" BVD 2 BVD "C4'" C4* C 0 1 N N R 50.355 84.289 54.037 -0.872 0.105 4.507 "C4'" BVD 3 BVD "O4'" O4* O 0 1 N N N 48.989 84.747 53.847 -0.882 0.569 3.139 "O4'" BVD 4 BVD "C1'" C1* C 0 1 N N R 47.988 84.197 54.765 -0.784 -0.594 2.301 "C1'" BVD 5 BVD N1 N1 N 0 1 N N N 46.666 83.837 54.093 -0.016 -0.276 1.095 N1 BVD 6 BVD C6 C6 C 0 1 N N N 46.621 82.883 53.108 -0.595 -0.445 -0.129 C6 BVD 7 BVD C2 C2 C 0 1 N N N 45.536 84.512 54.435 1.240 0.180 1.218 C2 BVD 8 BVD O2 O2 O 0 1 N N N 45.440 85.299 55.369 1.714 0.315 2.329 O2 BVD 9 BVD N3 N3 N 0 1 N N N 44.476 84.249 53.705 1.993 0.484 0.146 N3 BVD 10 BVD C4 C4 C 0 1 N N N 44.354 83.251 52.783 1.493 0.344 -1.099 C4 BVD 11 BVD O4 O4 O 0 1 N N N 43.232 82.946 52.405 2.168 0.622 -2.074 O4 BVD 12 BVD C5 C5 C 0 1 N N N 45.554 82.611 52.377 0.117 -0.149 -1.256 C5 BVD 13 BVD C5A C5A C 0 1 N N N 45.636 81.606 51.428 -0.478 -0.319 -2.596 C5A BVD 14 BVD C5B C5B C 0 1 N N N 44.730 81.495 50.423 0.187 0.077 -3.674 C5B BVD 15 BVD BR BR BR 0 0 N N N 44.917 80.189 49.010 -0.631 -0.008 -5.376 BR BVD 16 BVD "C2'" C2* C 0 1 N N N 48.811 83.124 55.451 -0.060 -1.685 3.114 "C2'" BVD 17 BVD "C3'" C3* C 0 1 N N S 50.266 83.694 55.440 0.180 -1.031 4.499 "C3'" BVD 18 BVD "O3'" O3* O 0 1 N N N 50.296 84.820 56.276 -0.061 -1.966 5.553 "O3'" BVD 19 BVD "HO5'" *HO5 H 0 0 N N N 50.236 81.509 52.223 -1.098 2.971 6.012 "HO5'" BVD 20 BVD "H5'1" 1H5* H 0 0 N N N 51.873 82.995 53.075 0.530 1.609 5.148 "H5'1" BVD 21 BVD "H5'2" 2H5* H 0 0 N N N 50.873 83.775 51.946 -0.381 0.843 6.471 "H5'2" BVD 22 BVD "H4'" H4* H 0 1 N N N 51.132 85.082 53.944 -1.851 -0.280 4.789 "H4'" BVD 23 BVD "H1'" H1* H 0 1 N N N 47.547 84.892 55.517 -1.781 -0.938 2.026 "H1'" BVD 24 BVD H6 H6 H 0 1 N N N 47.519 82.283 52.884 -1.608 -0.810 -0.207 H6 BVD 25 BVD HN3 HN3 H 0 1 N N N 43.683 84.870 53.867 2.899 0.808 0.269 HN3 BVD 26 BVD H5A H5A H 0 1 N N N 46.453 80.866 51.474 -1.455 -0.767 -2.700 H5A BVD 27 BVD H5B H5B H 0 1 N N N 44.008 82.284 50.692 1.197 0.449 -3.578 H5B BVD 28 BVD "H2'1" 1H2* H 0 0 N N N 48.438 82.838 56.462 -0.692 -2.567 3.217 "H2'1" BVD 29 BVD "H2'2" 2H2* H 0 0 N N N 48.712 82.111 54.995 0.887 -1.946 2.644 "H2'2" BVD 30 BVD "H3'" H3* H 0 1 N N N 51.038 82.942 55.726 1.189 -0.624 4.566 "H3'" BVD 31 BVD "HO3'" *HO3 H 0 0 N N N 50.240 84.449 57.149 0.568 -2.690 5.434 "HO3'" BVD 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BVD "O5'" "C5'" SING N N 1 BVD "O5'" "HO5'" SING N N 2 BVD "C5'" "C4'" SING N N 3 BVD "C5'" "H5'1" SING N N 4 BVD "C5'" "H5'2" SING N N 5 BVD "C4'" "O4'" SING N N 6 BVD "C4'" "C3'" SING N N 7 BVD "C4'" "H4'" SING N N 8 BVD "O4'" "C1'" SING N N 9 BVD "C1'" N1 SING N N 10 BVD "C1'" "C2'" SING N N 11 BVD "C1'" "H1'" SING N N 12 BVD N1 C6 SING N N 13 BVD N1 C2 SING N N 14 BVD C6 C5 DOUB N N 15 BVD C6 H6 SING N N 16 BVD C2 O2 DOUB N N 17 BVD C2 N3 SING N N 18 BVD N3 C4 SING N N 19 BVD N3 HN3 SING N N 20 BVD C4 O4 DOUB N N 21 BVD C4 C5 SING N N 22 BVD C5 C5A SING N N 23 BVD C5A C5B DOUB N E 24 BVD C5A H5A SING N N 25 BVD C5B BR SING N N 26 BVD C5B H5B SING N N 27 BVD "C2'" "C3'" SING N N 28 BVD "C2'" "H2'1" SING N N 29 BVD "C2'" "H2'2" SING N N 30 BVD "C3'" "O3'" SING N N 31 BVD "C3'" "H3'" SING N N 32 BVD "O3'" "HO3'" SING N N 33 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BVD SMILES ACDLabs 10.04 "Br[C@H]=CC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2)CO" BVD SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(\C=C\Br)C(=O)NC2=O" BVD SMILES CACTVS 3.341 "OC[CH]1O[CH](C[CH]1O)N2C=C(C=CBr)C(=O)NC2=O" BVD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)\C=C\Br)CO)O" BVD SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=C(C(=O)NC2=O)C=CBr)CO)O" BVD InChI InChI 1.03 "InChI=1S/C11H13BrN2O5/c12-2-1-6-4-14(11(18)13-10(6)17)9-3-7(16)8(5-15)19-9/h1-2,4,7-9,15-16H,3,5H2,(H,13,17,18)/b2-1+/t7-,8+,9+/m0/s1" BVD InChIKey InChI 1.03 ODZBBRURCPAEIQ-PIXDULNESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BVD "SYSTEMATIC NAME" ACDLabs 10.04 "5-[(E)-2-bromoethenyl]-2'-deoxyuridine" BVD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(E)-2-bromoethenyl]-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BVD "Create component" 1999-07-08 RCSB BVD "Modify descriptor" 2011-06-04 RCSB #