data_BVX # _chem_comp.id BVX _chem_comp.name "3-[2-[(~{Z})-[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-5-[(~{Z})-(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H36 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Biliverdine IX alpha, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-07-02 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 584.662 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BVX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6XHG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BVX CHA C1 C 0 1 N N N -17.975 7.105 29.133 2.339 -0.029 -0.047 CHA BVX 1 BVX NA N1 N 0 1 N N N -18.922 6.882 26.733 0.465 1.537 -0.041 NA BVX 2 BVX C1A C2 C 0 1 N N N -18.061 6.543 27.713 1.759 1.237 -0.215 C1A BVX 3 BVX C2A C3 C 0 1 N N N -17.224 5.569 27.216 2.442 2.421 -0.597 C2A BVX 4 BVX C3A C4 C 0 1 N N N -17.580 5.327 25.923 1.515 3.412 -0.640 C3A BVX 5 BVX C4A C5 C 0 1 N N N -18.651 6.157 25.625 0.272 2.830 -0.285 C4A BVX 6 BVX CMA C6 C 0 1 N N N -16.882 4.306 25.030 1.761 4.855 -0.998 CMA BVX 7 BVX CAA C7 C 0 1 N N N -16.083 4.907 27.987 3.913 2.553 -0.896 CAA BVX 8 BVX CBA C8 C 0 1 N N N -14.831 5.761 27.760 4.681 2.773 0.409 CBA BVX 9 BVX CGA C9 C 0 1 N N N -14.066 5.987 29.065 6.153 2.905 0.109 CGA BVX 10 BVX O1A O1 O 0 1 N N N -14.427 5.402 30.121 7.025 3.106 1.109 O1A BVX 11 BVX O2A O2 O 0 1 N N N -13.070 6.758 29.081 6.546 2.830 -1.030 O2A BVX 12 BVX CHB C10 C 0 1 N N N -19.463 6.318 24.326 -0.967 3.512 -0.204 CHB BVX 13 BVX NB N2 N 0 1 N N N -19.326 4.268 23.077 -2.143 1.517 0.632 NB BVX 14 BVX C1B C11 C 0 1 N N N -19.381 5.613 23.206 -2.082 2.860 0.282 C1B BVX 15 BVX C2B C12 C 0 1 N N N -19.382 6.154 21.940 -3.340 3.448 0.503 C2B BVX 16 BVX C3B C13 C 0 1 N N N -19.314 5.149 21.046 -4.180 2.463 0.991 C3B BVX 17 BVX C4B C14 C 0 1 N N N -19.272 3.969 21.752 -3.387 1.228 1.059 C4B BVX 18 BVX CMB C15 C 0 1 N N N -19.453 7.637 21.597 -3.706 4.889 0.255 CMB BVX 19 BVX OB O3 O 0 1 N N N -19.207 2.876 21.294 -3.782 0.140 1.440 OB BVX 20 BVX CAB C16 C 0 1 N N N -19.278 5.320 19.526 -5.597 2.619 1.362 CAB BVX 21 BVX CBB C17 C 0 1 N N N -19.742 4.383 18.727 -6.253 1.608 1.922 CBB BVX 22 BVX NC N3 N 0 1 N N N -22.700 9.620 28.070 -2.313 -1.153 -1.227 NC BVX 23 BVX C1C C18 C 0 1 N N N -23.736 10.166 27.375 -3.491 -0.760 -1.748 C1C BVX 24 BVX C2C C19 C 0 1 N N N -24.529 10.848 28.263 -4.513 -1.592 -1.232 C2C BVX 25 BVX C3C C20 C 0 1 N N N -23.988 10.720 29.488 -3.939 -2.491 -0.394 C3C BVX 26 BVX C4C C21 C 0 1 N N N -22.846 9.959 29.371 -2.547 -2.228 -0.379 C4C BVX 27 BVX CMC C22 C 0 1 N N N -25.806 11.617 27.924 -5.982 -1.495 -1.555 CMC BVX 28 BVX OC O4 O 0 1 N N N -23.932 10.078 26.210 -3.650 0.159 -2.532 OC BVX 29 BVX CAC C23 C 0 1 N N N -24.555 11.324 30.775 -4.651 -3.572 0.378 CAC BVX 30 BVX CBC C24 C 0 1 N N N -23.760 12.519 31.297 -4.599 -4.881 -0.411 CBC BVX 31 BVX CHD C25 C 0 1 N N N -22.073 9.636 30.395 -1.597 -2.918 0.341 CHD BVX 32 BVX ND N4 N 0 1 Y N N -20.087 8.292 29.300 0.161 -1.200 0.034 ND BVX 33 BVX C1D C26 C 0 1 Y N N -20.724 8.901 30.348 -0.261 -2.459 0.371 C1D BVX 34 BVX C2D C27 C 0 1 Y N N -19.945 8.751 31.467 0.853 -3.208 0.748 C2D BVX 35 BVX C3D C28 C 0 1 Y N N -18.837 8.067 31.123 1.964 -2.395 0.639 C3D BVX 36 BVX C4D C29 C 0 1 Y N N -18.916 7.778 29.779 1.529 -1.143 0.194 C4D BVX 37 BVX CMD C30 C 0 1 N N N -20.282 9.284 32.859 0.845 -4.647 1.195 CMD BVX 38 BVX CAD C31 C 0 1 N N N -17.700 7.684 32.071 3.387 -2.786 0.945 CAD BVX 39 BVX CBD C32 C 0 1 N N N -17.674 6.174 32.325 4.045 -3.343 -0.319 CBD BVX 40 BVX CGD C33 C 0 1 N N N -19.030 5.700 32.839 5.468 -3.734 -0.014 CGD BVX 41 BVX O1D O5 O 0 1 N N N -19.561 6.253 33.834 6.245 -4.251 -0.979 O1D BVX 42 BVX O2D O6 O 0 1 N N N -19.613 4.746 32.269 5.910 -3.583 1.101 O2D BVX 43 BVX H1 H1 H 0 1 N N N -17.050 6.936 29.665 3.411 -0.144 -0.110 H1 BVX 44 BVX H4 H4 H 0 1 N N N -16.068 3.823 25.591 1.638 4.989 -2.073 H4 BVX 45 BVX H5 H5 H 0 1 N N N -17.607 3.544 24.708 1.048 5.487 -0.469 H5 BVX 46 BVX H6 H6 H 0 1 N N N -16.467 4.814 24.147 2.775 5.133 -0.711 H6 BVX 47 BVX H7 H7 H 0 1 N N N -16.324 4.869 29.059 4.269 1.642 -1.378 H7 BVX 48 BVX H8 H8 H 0 1 N N N -15.917 3.886 27.612 4.074 3.402 -1.560 H8 BVX 49 BVX H9 H9 H 0 1 N N N -14.173 5.248 27.043 4.326 3.684 0.890 H9 BVX 50 BVX H10 H10 H 0 1 N N N -15.132 6.736 27.348 4.521 1.925 1.073 H10 BVX 51 BVX H11 H11 H 0 1 N N N -13.848 5.648 30.833 7.959 3.184 0.868 H11 BVX 52 BVX H12 H12 H 0 1 N N N -20.197 7.111 24.328 -1.038 4.541 -0.521 H12 BVX 53 BVX H13 H13 H 0 1 N N N -19.325 3.607 23.827 -1.408 0.886 0.573 H13 BVX 54 BVX H14 H14 H 0 1 N N N -19.500 8.227 22.524 -4.074 5.000 -0.766 H14 BVX 55 BVX H15 H15 H 0 1 N N N -18.558 7.924 21.025 -4.484 5.192 0.956 H15 BVX 56 BVX H16 H16 H 0 1 N N N -20.352 7.831 20.993 -2.826 5.517 0.394 H16 BVX 57 BVX H17 H17 H 0 1 N N N -18.865 6.224 19.102 -6.102 3.556 1.179 H17 BVX 58 BVX H18 H18 H 0 1 N N N -19.708 4.521 17.656 -7.313 1.691 2.112 H18 BVX 59 BVX H19 H19 H 0 1 N N N -20.156 3.476 19.142 -5.726 0.703 2.187 H19 BVX 60 BVX H20 H20 H 0 1 N N N -21.961 9.066 27.686 -1.448 -0.756 -1.415 H20 BVX 61 BVX H21 H21 H 0 1 N N N -26.223 12.059 28.841 -6.135 -0.737 -2.323 H21 BVX 62 BVX H22 H22 H 0 1 N N N -25.573 12.416 27.205 -6.338 -2.458 -1.920 H22 BVX 63 BVX H23 H23 H 0 1 N N N -26.542 10.929 27.482 -6.534 -1.220 -0.657 H23 BVX 64 BVX H24 H24 H 0 1 N N N -25.586 11.652 30.579 -4.164 -3.709 1.344 H24 BVX 65 BVX H25 H25 H 0 1 N Y N -24.560 10.545 31.551 -5.691 -3.282 0.534 H25 BVX 66 BVX H26 H26 H 0 1 N N N -24.227 12.896 32.219 -5.086 -4.744 -1.376 H26 BVX 67 BVX H27 H27 H 0 1 N N N -22.727 12.207 31.510 -3.560 -5.171 -0.566 H27 BVX 68 BVX H28 H28 H 0 1 N N N -23.754 13.315 30.538 -5.114 -5.663 0.148 H28 BVX 69 BVX H29 H29 H 0 1 N N N -22.430 9.921 31.374 -1.872 -3.811 0.883 H29 BVX 70 BVX H30 H30 H 0 1 N N N -20.418 8.234 28.358 -0.405 -0.473 -0.269 H30 BVX 71 BVX H31 H31 H 0 1 N N N -20.848 8.523 33.417 0.970 -5.297 0.329 H31 BVX 72 BVX H32 H32 H 0 1 N N N -19.352 9.517 33.398 1.663 -4.815 1.895 H32 BVX 73 BVX H33 H33 H 0 1 N N N -20.889 10.196 32.765 -0.103 -4.871 1.684 H33 BVX 74 BVX H34 H34 H 0 1 N N N -16.742 7.989 31.624 3.939 -1.911 1.287 H34 BVX 75 BVX H35 H35 H 0 1 N N N -17.840 8.206 33.029 3.395 -3.548 1.724 H35 BVX 76 BVX H36 H36 H 0 1 N N N -17.439 5.652 31.386 3.493 -4.218 -0.661 H36 BVX 77 BVX H37 H37 H 0 1 N N N -16.902 5.945 33.074 4.037 -2.581 -1.099 H37 BVX 78 BVX H38 H38 H 0 1 N N N -20.392 5.834 34.024 7.150 -4.486 -0.735 H38 BVX 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BVX CBB CAB DOUB N N 1 BVX CAB C3B SING N N 2 BVX C3B C4B SING N N 3 BVX C3B C2B DOUB N N 4 BVX OB C4B DOUB N N 5 BVX CMB C2B SING N N 6 BVX C4B NB SING N N 7 BVX C2B C1B SING N N 8 BVX NB C1B SING N N 9 BVX C1B CHB DOUB N Z 10 BVX CHB C4A SING N N 11 BVX CMA C3A SING N N 12 BVX C4A C3A SING N N 13 BVX C4A NA DOUB N N 14 BVX C3A C2A DOUB N N 15 BVX OC C1C DOUB N N 16 BVX NA C1A SING N N 17 BVX C2A C1A SING N N 18 BVX C2A CAA SING N N 19 BVX C1C NC SING N N 20 BVX C1C C2C SING N N 21 BVX C1A CHA DOUB N Z 22 BVX CBA CAA SING N N 23 BVX CBA CGA SING N N 24 BVX CMC C2C SING N N 25 BVX NC C4C SING N N 26 BVX C2C C3C DOUB N N 27 BVX CGA O2A DOUB N N 28 BVX CGA O1A SING N N 29 BVX CHA C4D SING N N 30 BVX ND C4D SING Y N 31 BVX ND C1D SING Y N 32 BVX C4C C3C SING N N 33 BVX C4C CHD DOUB N Z 34 BVX C3C CAC SING N N 35 BVX C4D C3D DOUB Y N 36 BVX C1D CHD SING N N 37 BVX C1D C2D DOUB Y N 38 BVX CAC CBC SING N N 39 BVX C3D C2D SING Y N 40 BVX C3D CAD SING N N 41 BVX C2D CMD SING N N 42 BVX CAD CBD SING N N 43 BVX O2D CGD DOUB N N 44 BVX CBD CGD SING N N 45 BVX CGD O1D SING N N 46 BVX CHA H1 SING N N 47 BVX CMA H4 SING N N 48 BVX CMA H5 SING N N 49 BVX CMA H6 SING N N 50 BVX CAA H7 SING N N 51 BVX CAA H8 SING N N 52 BVX CBA H9 SING N N 53 BVX CBA H10 SING N N 54 BVX O1A H11 SING N N 55 BVX CHB H12 SING N N 56 BVX CMB H14 SING N N 57 BVX CMB H15 SING N N 58 BVX CMB H16 SING N N 59 BVX CAB H17 SING N N 60 BVX CBB H18 SING N N 61 BVX CBB H19 SING N N 62 BVX NC H20 SING N N 63 BVX CMC H21 SING N N 64 BVX CMC H22 SING N N 65 BVX CMC H23 SING N N 66 BVX CAC H24 SING N N 67 BVX CAC H25 SING N N 68 BVX CBC H26 SING N N 69 BVX CBC H27 SING N N 70 BVX CBC H28 SING N N 71 BVX CHD H29 SING N N 72 BVX ND H30 SING N N 73 BVX CMD H31 SING N N 74 BVX CMD H32 SING N N 75 BVX CMD H33 SING N N 76 BVX CAD H34 SING N N 77 BVX CAD H35 SING N N 78 BVX CBD H36 SING N N 79 BVX CBD H37 SING N N 80 BVX O1D H38 SING N N 81 BVX NB H13 SING N N 82 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BVX InChI InChI 1.03 "InChI=1S/C33H36N4O6/c1-7-20-19(6)32(42)37-27(20)14-25-18(5)23(10-12-31(40)41)29(35-25)15-28-22(9-11-30(38)39)17(4)24(34-28)13-26-16(3)21(8-2)33(43)36-26/h8,13-15,35H,2,7,9-12H2,1,3-6H3,(H,36,43)(H,37,42)(H,38,39)(H,40,41)/b26-13?,27-14-,28-15-" BVX InChIKey InChI 1.03 OFLCQIQWTPZPJY-IRCLPSFSSA-N BVX SMILES_CANONICAL CACTVS 3.385 "CCC1=C(C)C(=O)N\C1=C/c2[nH]c(\C=C3/N=C(\C=C4/NC(=O)C(=C4C)C=C)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C" BVX SMILES CACTVS 3.385 "CCC1=C(C)C(=O)NC1=Cc2[nH]c(C=C3N=C(C=C4NC(=O)C(=C4C)C=C)C(=C3CCC(O)=O)C)c(CCC(O)=O)c2C" BVX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC\1=C(C(=O)N/C1=C\c2c(c(c([nH]2)/C=C\3/C(=C(C(=N3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O)C)C" BVX SMILES "OpenEye OEToolkits" 2.0.7 "CCC1=C(C(=O)NC1=Cc2c(c(c([nH]2)C=C3C(=C(C(=N3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O)C)C" # _pdbx_chem_comp_identifier.comp_id BVX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[2-[(~{Z})-[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-pyrrol-2-ylidene]methyl]-5-[(~{Z})-(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BVX "Create component" 2020-07-02 RCSB BVX "Initial release" 2020-10-28 RCSB BVX "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BVX _pdbx_chem_comp_synonyms.name "Biliverdine IX alpha, bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##