data_BXP # _chem_comp.id BXP _chem_comp.name 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C10 H18 O9" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms XYLOBIOSE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-11-09 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.245 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BXP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RV8 _chem_comp.pdbx_subcomponent_list "XYP XYP" _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal BXP O1A O9 O 0 1 N N N 62.369 63.326 22.057 -5.145 -0.343 1.296 XYP 1 O4A polymer 1 1 BXP C1A C9 C 0 1 N N R 62.245 64.245 21.048 -3.966 -0.610 0.535 XYP 1 C1B polymer 1 2 BXP C2A C10 C 0 1 N N R 63.637 64.692 20.579 -3.534 0.662 -0.201 XYP 1 C2B polymer 1 3 BXP C3A C7 C 0 1 N N R 63.577 65.572 19.393 -2.237 0.384 -0.966 XYP 1 C3B polymer 1 4 BXP C4A C6 C 0 1 N N R 62.774 65.007 18.298 -1.171 -0.108 0.019 XYP 1 C4B polymer 1 5 BXP C5A C8 C 0 1 N N N 61.391 64.538 18.774 -1.694 -1.350 0.746 XYP 1 C5B polymer 1 6 BXP O2A O8 O 0 1 N N N 64.259 65.423 21.647 -4.556 1.052 -1.120 XYP 1 O2B polymer 1 7 BXP O3A O6 O 0 1 N N N 64.944 65.808 18.894 -1.787 1.585 -1.596 XYP 1 O3B polymer 1 8 BXP O4A O5 O 0 1 N N N 62.601 66.032 17.300 0.022 -0.440 -0.695 XYP 1 O4B polymer 1 9 BXP O5A O7 O 0 1 N N N 61.492 63.643 19.942 -2.918 -1.031 1.411 XYP 1 O5B polymer 1 10 BXP C1B C5 C 0 1 N N S 62.805 65.537 16.116 1.220 -0.261 0.063 XYP 2 C1B polymer 1 11 BXP C2B C3 C 0 1 N N R 62.263 66.524 15.005 2.417 -0.761 -0.750 XYP 2 C2B polymer 1 12 BXP C3B C2 C 0 1 N N S 62.560 66.033 13.636 3.703 -0.511 0.043 XYP 2 C3B polymer 1 13 BXP C4B C1 C 0 1 N N R 63.947 65.755 13.420 3.806 0.981 0.372 XYP 2 C4B polymer 1 14 BXP C5B C4 C 0 1 N N N 64.542 64.882 14.493 2.556 1.414 1.142 XYP 2 C5B polymer 1 15 BXP O2B O3 O 0 1 N N N 60.863 66.689 15.161 2.274 -2.161 -1.000 XYP 2 O2B polymer 1 16 BXP O3B O2 O 0 1 N N N 62.135 67.086 12.661 4.832 -0.907 -0.738 XYP 2 O3B polymer 1 17 BXP O4B O1 O 0 1 N N N 64.114 65.051 12.120 4.965 1.215 1.174 XYP 2 O4B polymer 1 18 BXP O5B O4 O 0 1 N N N 64.275 65.381 15.859 1.394 1.126 0.361 XYP 2 O5B polymer 1 19 BXP HO1A H18 H 0 0 N N N 62.856 63.709 22.777 -5.476 -1.105 1.790 XYP 1 HO4A polymer 1 20 BXP H1A1 H15 H 0 0 N N N 61.704 65.134 21.405 -4.172 -1.397 -0.191 XYP 1 H1B polymer 1 21 BXP H2A H16 H 0 1 N N N 64.231 63.798 20.340 -3.368 1.461 0.521 XYP 1 H2B polymer 1 22 BXP H3A H11 H 0 1 N N N 63.139 66.536 19.692 -2.415 -0.381 -1.722 XYP 1 H3B polymer 1 23 BXP H4A H10 H 0 1 N N N 63.304 64.147 17.862 -0.956 0.675 0.745 XYP 1 H4B polymer 1 24 BXP H5A1 H14 H 0 0 N N N 60.895 63.999 17.953 -0.958 -1.679 1.479 XYP 1 H5B1 polymer 1 25 BXP H5A2 H13 H 0 0 N N N 60.791 65.418 19.050 -1.870 -2.147 0.023 XYP 1 H5B2 polymer 1 26 BXP HO2A H17 H 0 0 N N N 64.308 64.874 22.421 -5.408 1.244 -0.704 XYP 1 HO2B polymer 1 27 BXP HO3A H12 H 0 0 N N N 65.477 66.174 19.590 -2.414 1.953 -2.234 XYP 1 HO3B polymer 1 28 BXP H1B H9 H 0 1 N N N 62.310 64.564 15.980 1.151 -0.826 0.992 XYP 2 H1B polymer 1 29 BXP H2B H5 H 0 1 N N N 62.766 67.492 15.149 2.464 -0.225 -1.698 XYP 2 H2B polymer 1 30 BXP H3B H3 H 0 1 N N N 61.970 65.124 13.450 3.679 -1.087 0.969 XYP 2 H3B polymer 1 31 BXP H4B H2 H 0 1 N N N 64.510 66.699 13.386 3.882 1.553 -0.553 XYP 2 H4B polymer 1 32 BXP H5B1 H8 H 0 0 N N N 65.631 64.836 14.343 2.603 2.484 1.341 XYP 2 H5B1 polymer 1 33 BXP H5B2 H7 H 0 0 N N N 64.116 63.872 14.399 2.503 0.870 2.085 XYP 2 H5B2 polymer 1 34 BXP HO2B H6 H 0 0 N N N 60.676 67.003 16.038 1.479 -2.392 -1.499 XYP 2 HO2B polymer 1 35 BXP HO3B H4 H 0 0 N N N 61.215 67.284 12.789 5.682 -0.771 -0.299 XYP 2 HO3B polymer 1 36 BXP HO4B H1 H 0 0 N N N 65.035 64.866 11.976 5.093 2.141 1.420 XYP 2 HO4B polymer 1 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BXP O4B C4B SING N N 1 BXP O3B C3B SING N N 2 BXP C4B C3B SING N N 3 BXP C4B C5B SING N N 4 BXP C3B C2B SING N N 5 BXP C5B O5B SING N N 6 BXP C2B O2B SING N N 7 BXP C2B C1B SING N N 8 BXP O5B C1B SING N N 9 BXP C1B O4A SING N N 10 BXP O4A C4A SING N N 11 BXP C4A C5A SING N N 12 BXP C4A C3A SING N N 13 BXP C5A O5A SING N N 14 BXP O3A C3A SING N N 15 BXP C3A C2A SING N N 16 BXP O5A C1A SING N N 17 BXP C2A C1A SING N N 18 BXP C2A O2A SING N N 19 BXP C1A O1A SING N N 20 BXP O4B HO4B SING N N 21 BXP C4B H4B SING N N 22 BXP C3B H3B SING N N 23 BXP O3B HO3B SING N N 24 BXP C2B H2B SING N N 25 BXP O2B HO2B SING N N 26 BXP C5B H5B2 SING N N 27 BXP C5B H5B1 SING N N 28 BXP C1B H1B SING N N 29 BXP C4A H4A SING N N 30 BXP C3A H3A SING N N 31 BXP O3A HO3A SING N N 32 BXP C5A H5A2 SING N N 33 BXP C5A H5A1 SING N N 34 BXP C1A H1A1 SING N N 35 BXP C2A H2A SING N N 36 BXP O2A HO2A SING N N 37 BXP O1A HO1A SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BXP SMILES ACDLabs 12.01 "O(C1COC(O)C(O)C1O)C2OCC(O)C(O)C2O" BXP InChI InChI 1.03 "InChI=1S/C10H18O9/c11-3-1-18-10(8(15)5(3)12)19-4-2-17-9(16)7(14)6(4)13/h3-16H,1-2H2/t3-,4-,5+,6+,7-,8-,9-,10+/m1/s1" BXP InChIKey InChI 1.03 LGQKSQQRKHFMLI-SJYYZXOBSA-N BXP SMILES_CANONICAL CACTVS 3.370 "O[C@@H]1CO[C@@H](O[C@@H]2CO[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O" BXP SMILES CACTVS 3.370 "O[CH]1CO[CH](O[CH]2CO[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O" BXP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]([C@@H]([C@H]([C@@H](O1)O[C@@H]2CO[C@H]([C@@H]([C@H]2O)O)O)O)O)O" BXP SMILES "OpenEye OEToolkits" 1.7.6 "C1C(C(C(C(O1)OC2COC(C(C2O)O)O)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BXP "SYSTEMATIC NAME" ACDLabs 12.01 4-O-beta-D-xylopyranosyl-beta-D-xylopyranose BXP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4S,5R)-2-[(3R,4R,5R,6R)-4,5,6-tris(oxidanyl)oxan-3-yl]oxyoxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BXP "Create component" 2006-11-09 EBI BXP "Modify descriptor" 2011-06-04 RCSB BXP "Other modification" 2013-01-16 RCSB BXP "Other modification" 2020-07-03 RCSB BXP "Obsolete component" 2020-07-17 RCSB ##