data_BXY # _chem_comp.id BXY _chem_comp.name alpha-D-arabinofuranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-D-arabinose; D-arabinose; arabinose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-06-04 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BXY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HNS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BXY alpha-D-arabinose PDB ? 2 BXY D-arabinose PDB ? 3 BXY arabinose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BXY O5 O5 O 0 1 N N N 4.758 35.640 -0.208 3.148 -0.570 0.259 O5 BXY 1 BXY C5 C5 C 0 1 N N N 5.223 36.344 0.675 2.028 0.187 0.723 C5 BXY 2 BXY C4 C4 C 0 1 N N R 6.096 37.409 0.039 0.997 0.313 -0.401 C4 BXY 3 BXY C3 C3 C 0 1 N N S 5.145 38.504 -0.439 -0.161 1.225 0.050 C3 BXY 4 BXY O3 O3 O 0 1 N N N 5.154 39.480 0.609 -0.327 2.311 -0.863 O3 BXY 5 BXY C2 C2 C 0 1 N N S 5.929 39.145 -1.590 -1.403 0.301 0.025 C2 BXY 6 BXY O2 O2 O 0 1 N N N 5.036 39.190 -2.702 -2.240 0.543 1.158 O2 BXY 7 BXY C1 C1 C 0 1 N N S 6.976 38.085 -1.918 -0.761 -1.108 0.101 C1 BXY 8 BXY O4 O4 O 0 1 N N N 6.630 36.914 -1.183 0.438 -0.977 -0.698 O4 BXY 9 BXY HO5 HO5 H 0 1 N Y N 4.637 36.157 -0.996 3.842 -0.690 0.921 HO5 BXY 10 BXY H51 H5 H 0 1 N N N 4.407 36.820 1.238 1.575 -0.320 1.576 H51 BXY 11 BXY H52 H5A H 0 1 N N N 5.822 35.732 1.365 2.360 1.180 1.025 H52 BXY 12 BXY H4 H4 H 0 1 N N N 6.874 37.724 0.750 1.469 0.727 -1.291 H4 BXY 13 BXY H3 H3 H 0 1 N N N 4.132 38.164 -0.700 0.019 1.599 1.058 H3 BXY 14 BXY HO3 HO3 H 0 1 N Y N 5.156 39.041 1.451 -1.042 2.917 -0.628 HO3 BXY 15 BXY H2 H2 H 0 1 N N N 6.343 40.139 -1.366 -1.961 0.425 -0.902 H2 BXY 16 BXY HO2 HO2 H 0 1 N Y N 4.139 39.200 -2.388 -3.032 -0.012 1.187 HO2 BXY 17 BXY O1 O1 O 0 1 N Y N 8.363 38.433 -1.918 -1.635 -2.089 -0.460 O1 BXY 18 BXY H1 H1 H 0 1 N N N 6.915 37.912 -3.003 -0.510 -1.360 1.132 H1 BXY 19 BXY HO1 H10 H 0 1 N Y N 8.671 38.510 -2.814 -1.282 -2.989 -0.437 HO1 BXY 20 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BXY O5 C5 SING N N 1 BXY O5 HO5 SING N N 2 BXY C5 H51 SING N N 3 BXY C5 H52 SING N N 4 BXY C4 C5 SING N N 5 BXY C4 H4 SING N N 6 BXY C3 C4 SING N N 7 BXY C3 O3 SING N N 8 BXY C3 H3 SING N N 9 BXY O3 HO3 SING N N 10 BXY C2 C3 SING N N 11 BXY C2 H2 SING N N 12 BXY O2 C2 SING N N 13 BXY O2 HO2 SING N N 14 BXY C1 C2 SING N N 15 BXY C1 O4 SING N N 16 BXY C1 O1 SING N N 17 BXY O4 C4 SING N N 18 BXY C1 H1 SING N N 19 BXY O1 HO1 SING N N 20 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BXY SMILES ACDLabs 10.04 "OC1C(OC(O)C1O)CO" BXY SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O)[C@@H](O)[C@@H]1O" BXY SMILES CACTVS 3.341 "OC[CH]1O[CH](O)[CH](O)[CH]1O" BXY SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@H](O1)O)O)O)O" BXY SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(O1)O)O)O)O" BXY InChI InChI 1.03 "InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5+/m1/s1" BXY InChIKey InChI 1.03 HMFHBZSHGGEWLO-MBMOQRBOSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BXY "SYSTEMATIC NAME" ACDLabs 10.04 alpha-D-arabinofuranose BXY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,4S,5R)-5-(hydroxymethyl)oxolane-2,3,4-triol" BXY "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DArafa BXY "COMMON NAME" GMML 1.0 a-D-arabinofuranose BXY "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-Araf BXY "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Ara # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BXY "CARBOHYDRATE ISOMER" D PDB ? BXY "CARBOHYDRATE RING" furanose PDB ? BXY "CARBOHYDRATE ANOMER" alpha PDB ? BXY "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BXY "Create component" 2009-06-04 RCSB BXY "Modify descriptor" 2011-06-04 RCSB BXY "Other modification" 2019-08-12 RCSB BXY "Other modification" 2019-12-19 RCSB BXY "Other modification" 2020-07-03 RCSB BXY "Modify synonyms" 2020-07-17 RCSB BXY "Modify atom id" 2020-07-17 RCSB BXY "Modify component atom id" 2020-07-17 RCSB ##