data_BY9 # _chem_comp.id BY9 _chem_comp.name "12-beta-D-glucopyranosyl-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H21 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "rebeccamycin analogue" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-11-04 _chem_comp.pdbx_modified_date 2020-11-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 487.461 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BY9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6UV6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BY9 C1 C1 C 0 1 Y N N 20.202 8.451 -16.108 -1.918 4.351 -0.237 C1 BY9 1 BY9 C10 C2 C 0 1 Y N N 15.170 9.949 -13.159 -2.593 -1.637 -0.004 C10 BY9 2 BY9 C11 C3 C 0 1 Y N N 15.065 8.570 -12.932 -1.193 -1.635 0.020 C11 BY9 3 BY9 C12 C4 C 0 1 Y N N 14.164 7.695 -12.198 -0.182 -2.703 0.081 C12 BY9 4 BY9 C13 C5 C 0 1 Y N N 13.074 7.905 -11.357 -0.259 -4.094 0.137 C13 BY9 5 BY9 C14 C6 C 0 1 Y N N 12.464 6.826 -10.743 0.898 -4.841 0.187 C14 BY9 6 BY9 C15 C7 C 0 1 Y N N 12.920 5.538 -10.960 2.135 -4.215 0.184 C15 BY9 7 BY9 C16 C8 C 0 1 Y N N 13.992 5.300 -11.803 2.226 -2.841 0.129 C16 BY9 8 BY9 C17 C9 C 0 1 Y N N 14.610 6.380 -12.415 1.070 -2.068 0.077 C17 BY9 9 BY9 C18 C10 C 0 1 Y N N 16.028 7.734 -13.530 -0.487 -0.421 -0.018 C18 BY9 10 BY9 C19 C11 C 0 1 Y N N 17.106 8.261 -14.263 -1.186 0.791 -0.079 C19 BY9 11 BY9 C2 C12 C 0 1 Y N N 20.829 9.579 -16.613 -3.153 4.962 -0.289 C2 BY9 12 BY9 C20 C13 C 0 1 Y N N 19.007 8.608 -15.419 -1.829 2.964 -0.179 C20 BY9 13 BY9 C21 C14 C 0 1 N N R 16.332 5.255 -13.897 1.929 0.304 -0.005 C21 BY9 14 BY9 C22 C15 C 0 1 N N R 16.111 5.268 -15.410 2.533 0.439 1.395 C22 BY9 15 BY9 C23 C16 C 0 1 N N S 16.882 4.125 -16.055 3.685 1.448 1.351 C23 BY9 16 BY9 C24 C17 C 0 1 N N S 18.379 4.278 -15.706 4.715 0.985 0.315 C24 BY9 17 BY9 C25 C18 C 0 1 N N R 18.408 4.150 -14.168 4.027 0.829 -1.043 C25 BY9 18 BY9 C26 C19 C 0 1 N N N 19.807 4.165 -13.589 5.035 0.310 -2.069 C26 BY9 19 BY9 C3 C20 C 0 1 Y N N 20.273 10.836 -16.434 -4.315 4.206 -0.285 C3 BY9 20 BY9 C4 C21 C 0 1 Y N N 19.083 10.994 -15.740 -4.249 2.831 -0.227 C4 BY9 21 BY9 C5 C22 C 0 1 Y N N 18.435 9.879 -15.220 -3.007 2.200 -0.169 C5 BY9 22 BY9 C6 C23 C 0 1 Y N N 17.211 9.660 -14.465 -2.590 0.789 -0.104 C6 BY9 23 BY9 C7 C24 C 0 1 Y N N 16.216 10.484 -13.915 -3.295 -0.421 -0.067 C7 BY9 24 BY9 C8 C25 C 0 1 N N N 16.011 11.952 -14.001 -4.725 -0.777 -0.077 C8 BY9 25 BY9 C9 C26 C 0 1 N N N 14.286 11.073 -12.756 -3.619 -2.695 0.021 C9 BY9 26 BY9 N1 N1 N 0 1 N N N 14.853 12.212 -13.293 -4.833 -2.117 -0.024 N1 BY9 27 BY9 N2 N2 N 0 1 Y N N 15.726 6.409 -13.258 0.865 -0.702 0.017 N2 BY9 28 BY9 N3 N3 N 0 1 Y N N 18.198 7.646 -14.843 -0.751 2.101 -0.124 N3 BY9 29 BY9 O1 O1 O 0 1 N N N 16.702 12.793 -14.568 -5.651 0.008 -0.125 O1 BY9 30 BY9 O2 O2 O 0 1 N N N 13.253 11.039 -12.090 -3.405 -3.890 0.074 O2 BY9 31 BY9 O3 O3 O 0 1 N N N 14.720 5.115 -15.677 1.531 0.896 2.306 O3 BY9 32 BY9 O4 O4 O 0 1 N N N 16.818 4.246 -17.471 4.302 1.526 2.637 O4 BY9 33 BY9 O5 O5 O 0 1 N N N 19.113 3.220 -16.211 5.758 1.957 0.213 O5 BY9 34 BY9 O6 O6 O 0 1 N N N 17.719 5.275 -13.602 2.947 -0.099 -0.924 O6 BY9 35 BY9 O7 O7 O 0 1 N N N 20.587 5.195 -14.157 4.425 0.275 -3.361 O7 BY9 36 BY9 H20 H1 H 0 1 N N N 20.634 7.471 -16.247 -1.019 4.950 -0.245 H20 BY9 37 BY9 H5 H2 H 0 1 N N N 12.707 8.906 -11.185 -1.221 -4.584 0.141 H5 BY9 38 BY9 H6 H4 H 0 1 N N N 11.622 6.991 -10.087 0.841 -5.919 0.230 H6 BY9 39 BY9 H7 H5 H 0 1 N N N 12.434 4.709 -10.466 3.036 -4.810 0.224 H7 BY9 40 BY9 H21 H6 H 0 1 N N N 14.340 4.293 -11.980 3.195 -2.364 0.128 H21 BY9 41 BY9 H1 H8 H 0 1 N N N 21.760 9.478 -17.151 -3.215 6.040 -0.334 H1 BY9 42 BY9 H9 H9 H 0 1 N N N 15.880 4.338 -13.492 1.516 1.263 -0.317 H9 BY9 43 BY9 H10 H10 H 0 1 N N N 16.477 6.222 -15.816 2.910 -0.530 1.724 H10 BY9 44 BY9 H11 H11 H 0 1 N N N 16.504 3.154 -15.703 3.300 2.428 1.070 H11 BY9 45 BY9 H12 H12 H 0 1 N N N 18.756 5.261 -16.024 5.136 0.028 0.623 H12 BY9 46 BY9 H13 H13 H 0 1 N N N 17.908 3.213 -13.881 3.641 1.796 -1.368 H13 BY9 47 BY9 H14 H14 H 0 1 N N N 19.743 4.322 -12.502 5.901 0.972 -2.095 H14 BY9 48 BY9 H15 H15 H 0 1 N N N 20.289 3.197 -13.792 5.353 -0.694 -1.790 H15 BY9 49 BY9 H2 H16 H 0 1 N N N 20.773 11.703 -16.840 -5.276 4.697 -0.326 H2 BY9 50 BY9 H3 H17 H 0 1 N N N 18.661 11.979 -15.604 -5.155 2.244 -0.223 H3 BY9 51 BY9 H4 H18 H 0 1 N N N 14.467 13.128 -13.181 -5.673 -2.601 -0.019 H4 BY9 52 BY9 H8 H19 H 0 1 N N N 18.375 6.662 -14.846 0.179 2.377 -0.118 H8 BY9 53 BY9 H22 H20 H 0 1 N N N 14.239 5.829 -15.274 1.845 1.004 3.214 H22 BY9 54 BY9 H16 H21 H 0 1 N N N 15.916 4.161 -17.756 5.046 2.143 2.680 H16 BY9 55 BY9 H18 H22 H 0 1 N N N 20.029 3.333 -15.986 6.235 2.110 1.041 H18 BY9 56 BY9 H23 H23 H 0 1 N N N 21.457 5.181 -13.776 5.009 -0.045 -4.063 H23 BY9 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BY9 O4 C23 SING N N 1 BY9 C2 C3 DOUB Y N 2 BY9 C2 C1 SING Y N 3 BY9 C3 C4 SING Y N 4 BY9 O5 C24 SING N N 5 BY9 C1 C20 DOUB Y N 6 BY9 C23 C24 SING N N 7 BY9 C23 C22 SING N N 8 BY9 C4 C5 DOUB Y N 9 BY9 C24 C25 SING N N 10 BY9 O3 C22 SING N N 11 BY9 C20 C5 SING Y N 12 BY9 C20 N3 SING Y N 13 BY9 C22 C21 SING N N 14 BY9 C5 C6 SING Y N 15 BY9 N3 C19 SING Y N 16 BY9 O1 C8 DOUB N N 17 BY9 C6 C19 DOUB Y N 18 BY9 C6 C7 SING Y N 19 BY9 C19 C18 SING Y N 20 BY9 C25 O6 SING N N 21 BY9 C25 C26 SING N N 22 BY9 O7 C26 SING N N 23 BY9 C8 C7 SING N N 24 BY9 C8 N1 SING N N 25 BY9 C7 C10 DOUB Y N 26 BY9 C21 O6 SING N N 27 BY9 C21 N2 SING N N 28 BY9 C18 N2 SING Y N 29 BY9 C18 C11 DOUB Y N 30 BY9 N1 C9 SING N N 31 BY9 N2 C17 SING Y N 32 BY9 C10 C11 SING Y N 33 BY9 C10 C9 SING N N 34 BY9 C11 C12 SING Y N 35 BY9 C9 O2 DOUB N N 36 BY9 C17 C12 DOUB Y N 37 BY9 C17 C16 SING Y N 38 BY9 C12 C13 SING Y N 39 BY9 C16 C15 DOUB Y N 40 BY9 C13 C14 DOUB Y N 41 BY9 C15 C14 SING Y N 42 BY9 C1 H20 SING N N 43 BY9 C13 H5 SING N N 44 BY9 C14 H6 SING N N 45 BY9 C15 H7 SING N N 46 BY9 C16 H21 SING N N 47 BY9 C2 H1 SING N N 48 BY9 C21 H9 SING N N 49 BY9 C22 H10 SING N N 50 BY9 C23 H11 SING N N 51 BY9 C24 H12 SING N N 52 BY9 C25 H13 SING N N 53 BY9 C26 H14 SING N N 54 BY9 C26 H15 SING N N 55 BY9 C3 H2 SING N N 56 BY9 C4 H3 SING N N 57 BY9 N1 H4 SING N N 58 BY9 N3 H8 SING N N 59 BY9 O3 H22 SING N N 60 BY9 O4 H16 SING N N 61 BY9 O5 H18 SING N N 62 BY9 O7 H23 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BY9 SMILES ACDLabs 12.01 "c1c7c(ccc1)c3c(c5c(c2C(=O)NC(c23)=O)c4ccccc4n5C6OC(C(C(C6O)O)O)CO)n7" BY9 InChI InChI 1.03 "InChI=1S/C26H21N3O7/c30-9-14-21(31)22(32)23(33)26(36-14)29-13-8-4-2-6-11(13)16-18-17(24(34)28-25(18)35)15-10-5-1-3-7-12(10)27-19(15)20(16)29/h1-8,14,21-23,26-27,30-33H,9H2,(H,28,34,35)/t14-,21-,22+,23-,26-/m1/s1" BY9 InChIKey InChI 1.03 FAKJOUAYZNXZGV-QCUUGYDUSA-N BY9 SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)n2c3ccccc3c4c2c5[nH]c6ccccc6c5c7C(=O)NC(=O)c47" BY9 SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)n2c3ccccc3c4c2c5[nH]c6ccccc6c5c7C(=O)NC(=O)c47" BY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3c4c(c5c6ccccc6n(c5c3[nH]2)[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O)C(=O)NC4=O" BY9 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3c4c(c5c6ccccc6n(c5c3[nH]2)C7C(C(C(C(O7)CO)O)O)O)C(=O)NC4=O" # _pdbx_chem_comp_identifier.comp_id BY9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "12-beta-D-glucopyranosyl-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BY9 _pdbx_chem_comp_synonyms.name "rebeccamycin analogue" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BY9 "Create component" 2019-11-04 RCSB BY9 "Modify synonyms" 2020-06-05 PDBE BY9 "Initial release" 2020-11-25 RCSB ##