data_BYN # _chem_comp.id BYN _chem_comp.name "hydroxylated prenyl-FMN" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H31 N4 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-11-01 _chem_comp.pdbx_modified_date 2017-12-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 542.476 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BYN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EV9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BYN C1 C1 C 0 1 N N N 22.660 11.615 26.844 2.009 -4.081 -0.844 C1 BYN 1 BYN N1 N1 N 0 1 N N N 22.278 12.877 26.585 3.090 -4.068 -0.023 N1 BYN 2 BYN C2 C2 C 0 1 N N N 21.635 13.197 25.414 3.596 -2.895 0.423 C2 BYN 3 BYN C3 C3 C 0 1 N N N 21.366 12.112 24.530 2.933 -1.711 0.094 C3 BYN 4 BYN C4 C4 C 0 1 N N N 21.828 10.838 24.877 1.807 -1.788 -0.721 C4 BYN 5 BYN N2 N2 N 0 1 N N N 22.436 10.598 26.061 1.378 -2.974 -1.161 N2 BYN 6 BYN N3 N3 N 0 1 N N N 20.702 12.286 23.306 3.349 -0.447 0.545 N3 BYN 7 BYN C5 C5 C 0 1 Y N N 20.860 11.286 22.328 2.941 0.713 -0.138 C5 BYN 8 BYN C6 C6 C 0 1 Y N N 21.279 10.004 22.684 1.819 0.612 -0.965 C6 BYN 9 BYN N4 N4 N 0 1 N N N 21.617 9.759 24.012 1.153 -0.618 -1.080 N4 BYN 10 BYN C7 C7 C 0 1 Y N N 20.509 11.570 20.991 3.631 1.913 0.011 C7 BYN 11 BYN C8 C8 C 0 1 Y N N 20.620 10.579 20.022 3.129 3.030 -0.637 C8 BYN 12 BYN C9 C9 C 0 1 Y N N 21.067 9.295 20.353 2.022 2.929 -1.469 C9 BYN 13 BYN C10 C10 C 0 1 Y N N 21.401 8.994 21.671 1.370 1.725 -1.648 C10 BYN 14 BYN C11 C11 C 0 1 N N R 19.724 13.411 23.164 4.178 -0.276 1.741 C11 BYN 15 BYN C12 C12 C 0 1 N N N 19.030 13.360 21.809 5.362 0.582 1.301 C12 BYN 16 BYN C13 C13 C 0 1 N N N 20.045 13.004 20.712 4.888 1.964 0.837 C13 BYN 17 BYN O1 O1 O 0 1 N N N 23.258 11.465 28.034 1.565 -5.258 -1.334 O1 BYN 18 BYN C14 C14 C 0 1 N N N 21.160 8.231 19.290 1.528 4.163 -2.184 C14 BYN 19 BYN C15 C15 C 0 1 N N N 20.250 10.921 18.604 3.686 4.425 -0.480 C15 BYN 20 BYN O2 O2 O 0 1 N N N 18.710 13.366 24.191 3.425 0.358 2.774 O2 BYN 21 BYN C16 C16 C 0 1 N N N 19.396 13.188 19.337 4.705 2.854 2.067 C16 BYN 22 BYN C17 C17 C 0 1 N N N 21.238 13.964 20.795 6.044 2.526 -0.013 C17 BYN 23 BYN C18 C18 C 0 1 N N N 21.729 8.396 24.525 -0.229 -0.687 -1.561 C18 BYN 24 BYN O3 O3 O 0 1 N N N 21.331 14.381 25.231 4.626 -2.900 1.079 O3 BYN 25 BYN C19 C19 C 0 1 N N S 23.171 7.958 24.781 -1.188 -0.435 -0.396 C19 BYN 26 BYN C20 C20 C 0 1 N N S 23.177 6.519 25.303 -2.618 -0.324 -0.929 C20 BYN 27 BYN C21 C21 C 0 1 N N R 24.573 5.905 25.440 -3.578 -0.072 0.236 C21 BYN 28 BYN C22 C22 C 0 1 N N N 25.549 6.792 26.171 -5.008 0.040 -0.296 C22 BYN 29 BYN O4 O4 O 0 1 N N N 23.908 8.035 23.574 -1.108 -1.521 0.530 O4 BYN 30 BYN O5 O5 O 0 1 N N N 22.510 6.473 26.563 -2.698 0.762 -1.855 O5 BYN 31 BYN O6 O6 O 0 1 N N N 24.486 4.638 26.097 -3.498 -1.157 1.162 O6 BYN 32 BYN O7 O7 O 0 1 N N N 26.858 6.184 26.062 -5.888 0.391 0.773 O7 BYN 33 BYN P1 P1 P 0 1 N N N 27.626 5.698 27.403 -7.473 0.593 0.574 P1 BYN 34 BYN O8 O8 O 0 1 N N N 29.079 5.519 26.979 -7.712 1.595 -0.489 O8 BYN 35 BYN O9 O9 O 0 1 N N N 26.951 4.394 27.777 -8.144 -0.808 0.152 O9 BYN 36 BYN O10 O10 O 0 1 N N N 27.422 6.788 28.436 -8.126 1.107 1.953 O10 BYN 37 BYN H1 H1 H 0 1 N N N 22.465 13.595 27.256 3.504 -4.903 0.248 H1 BYN 38 BYN H3 H3 H 0 1 N N N 21.750 8.005 21.930 0.531 1.674 -2.325 H3 BYN 39 BYN H4 H4 H 0 1 N N N 20.271 14.362 23.235 4.534 -1.239 2.104 H4 BYN 40 BYN H5 H5 H 0 1 N N N 18.586 14.342 21.590 6.057 0.705 2.136 H5 BYN 41 BYN H6 H6 H 0 1 N N N 18.238 12.597 21.834 5.886 0.089 0.477 H6 BYN 42 BYN H7 H7 H 0 1 N N N 22.162 8.252 18.836 2.026 4.246 -3.150 H7 BYN 43 BYN H8 H8 H 0 1 N N N 20.983 7.244 19.743 0.451 4.088 -2.335 H8 BYN 44 BYN H9 H9 H 0 1 N N N 20.403 8.420 18.515 1.751 5.044 -1.583 H9 BYN 45 BYN H10 H10 H 0 1 N N N 19.182 10.713 18.443 3.220 4.908 0.379 H10 BYN 46 BYN H11 H11 H 0 1 N N N 20.447 11.988 18.421 4.764 4.370 -0.325 H11 BYN 47 BYN H12 H12 H 0 1 N N N 20.851 10.313 17.912 3.478 5.003 -1.380 H12 BYN 48 BYN H13 H13 H 0 1 N N N 19.077 13.672 25.012 2.639 -0.136 3.047 H13 BYN 49 BYN H14 H14 H 0 1 N N N 18.534 12.511 19.244 4.589 3.891 1.751 H14 BYN 50 BYN H15 H15 H 0 1 N N N 19.058 14.229 19.227 3.816 2.539 2.614 H15 BYN 51 BYN H16 H16 H 0 1 N N N 20.130 12.956 18.551 5.579 2.766 2.712 H16 BYN 52 BYN H17 H17 H 0 1 N N N 21.728 13.857 21.774 5.999 3.615 -0.013 H17 BYN 53 BYN H18 H18 H 0 1 N N N 21.957 13.725 19.997 6.996 2.202 0.408 H18 BYN 54 BYN H19 H19 H 0 1 N N N 20.885 14.999 20.673 5.955 2.159 -1.035 H19 BYN 55 BYN H20 H20 H 0 1 N N N 21.173 8.333 25.472 -0.384 0.070 -2.330 H20 BYN 56 BYN H21 H21 H 0 1 N N N 21.282 7.710 23.791 -0.418 -1.675 -1.981 H21 BYN 57 BYN H22 H22 H 0 1 N N N 23.613 8.615 25.544 -0.914 0.492 0.106 H22 BYN 58 BYN H23 H23 H 0 1 N N N 22.616 5.905 24.583 -2.892 -1.251 -1.431 H23 BYN 59 BYN H24 H24 H 0 1 N N N 24.963 5.747 24.424 -3.303 0.856 0.739 H24 BYN 60 BYN H25 H25 H 0 1 N N N 25.561 7.793 25.715 -5.049 0.809 -1.068 H25 BYN 61 BYN H26 H26 H 0 1 N N N 25.261 6.875 27.229 -5.314 -0.916 -0.720 H26 BYN 62 BYN H27 H27 H 0 1 N N N 24.804 7.763 23.732 -1.278 -2.387 0.136 H27 BYN 63 BYN H28 H28 H 0 1 N N N 22.512 5.581 26.890 -2.467 1.621 -1.475 H28 BYN 64 BYN H29 H29 H 0 1 N N N 25.355 4.263 26.179 -3.729 -2.016 0.783 H29 BYN 65 BYN H30 H30 H 0 1 N N N 27.568 3.678 27.679 -8.026 -1.513 0.804 H30 BYN 66 BYN H31 H31 H 0 1 N N N 28.259 7.184 28.648 -9.081 1.251 1.907 H31 BYN 67 BYN H2 H2 H 0 1 N N N 23.464 10.548 28.172 0.792 -5.177 -1.910 H2 BYN 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BYN C15 C8 SING N N 1 BYN C14 C9 SING N N 2 BYN C16 C13 SING N N 3 BYN C8 C9 DOUB Y N 4 BYN C8 C7 SING Y N 5 BYN C9 C10 SING Y N 6 BYN C13 C17 SING N N 7 BYN C13 C7 SING N N 8 BYN C13 C12 SING N N 9 BYN C7 C5 DOUB Y N 10 BYN C10 C6 DOUB Y N 11 BYN C12 C11 SING N N 12 BYN C5 C6 SING Y N 13 BYN C5 N3 SING N N 14 BYN C6 N4 SING N N 15 BYN C11 N3 SING N N 16 BYN C11 O2 SING N N 17 BYN N3 C3 SING N N 18 BYN O4 C19 SING N N 19 BYN N4 C18 SING N N 20 BYN N4 C4 SING N N 21 BYN C18 C19 SING N N 22 BYN C3 C4 DOUB N N 23 BYN C3 C2 SING N N 24 BYN C19 C20 SING N N 25 BYN C4 N2 SING N N 26 BYN O3 C2 DOUB N N 27 BYN C20 C21 SING N N 28 BYN C20 O5 SING N N 29 BYN C2 N1 SING N N 30 BYN C21 O6 SING N N 31 BYN C21 C22 SING N N 32 BYN N2 C1 DOUB N N 33 BYN O7 C22 SING N N 34 BYN O7 P1 SING N N 35 BYN N1 C1 SING N N 36 BYN C1 O1 SING N N 37 BYN O8 P1 DOUB N N 38 BYN P1 O9 SING N N 39 BYN P1 O10 SING N N 40 BYN N1 H1 SING N N 41 BYN C10 H3 SING N N 42 BYN C11 H4 SING N N 43 BYN C12 H5 SING N N 44 BYN C12 H6 SING N N 45 BYN C14 H7 SING N N 46 BYN C14 H8 SING N N 47 BYN C14 H9 SING N N 48 BYN C15 H10 SING N N 49 BYN C15 H11 SING N N 50 BYN C15 H12 SING N N 51 BYN O2 H13 SING N N 52 BYN C16 H14 SING N N 53 BYN C16 H15 SING N N 54 BYN C16 H16 SING N N 55 BYN C17 H17 SING N N 56 BYN C17 H18 SING N N 57 BYN C17 H19 SING N N 58 BYN C18 H20 SING N N 59 BYN C18 H21 SING N N 60 BYN C19 H22 SING N N 61 BYN C20 H23 SING N N 62 BYN C21 H24 SING N N 63 BYN C22 H25 SING N N 64 BYN C22 H26 SING N N 65 BYN O4 H27 SING N N 66 BYN O5 H28 SING N N 67 BYN O6 H29 SING N N 68 BYN O9 H30 SING N N 69 BYN O10 H31 SING N N 70 BYN O1 H2 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BYN InChI InChI 1.03 "InChI=1S/C22H31N4O10P/c1-9-5-11-16-15(10(9)2)22(3,4)6-14(29)26(16)17-19(23-21(32)24-20(17)31)25(11)7-12(27)18(30)13(28)8-36-37(33,34)35/h5,12-14,18,27-30H,6-8H2,1-4H3,(H2,33,34,35)(H2,23,24,31,32)/t12-,13+,14+,18-/m0/s1" BYN InChIKey InChI 1.03 BDNVCRCOZIAGID-LWGWVAHUSA-N BYN SMILES_CANONICAL CACTVS 3.385 "Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)C3=C(N4[C@H](O)CC(C)(C)c(c1C)c24)C(=O)NC(=N3)O" BYN SMILES CACTVS 3.385 "Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)C3=C(N4[CH](O)CC(C)(C)c(c1C)c24)C(=O)NC(=N3)O" BYN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc2c3c(c1C)C(C[C@H](N3C4=C(N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)N=C(NC4=O)O)O)(C)C" BYN SMILES "OpenEye OEToolkits" 2.0.6 "Cc1cc2c3c(c1C)C(CC(N3C4=C(N2CC(C(C(COP(=O)(O)O)O)O)O)N=C(NC4=O)O)O)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BYN "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-[(16~{R})-11,12,14,14-tetramethyl-5,16-bis(oxidanyl)-3-oxidanylidene-1,4,6,8-tetrazatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-2(7),5,9,11,13(17)-pentaen-8-yl]pentyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BYN "Create component" 2017-11-01 RCSB BYN "Initial release" 2017-12-20 RCSB #