data_BYT # _chem_comp.id BYT _chem_comp.name Biocytin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H28 N4 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-08-01 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.483 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BYT _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4LOD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BYT N01 N01 N 0 1 N N N -49.910 -5.777 31.022 -8.402 1.555 1.117 N01 BYT 1 BYT C02 C02 C 0 1 N N S -49.870 -4.639 30.151 -8.439 0.585 0.014 C02 BYT 2 BYT C03 C03 C 0 1 N N N -48.444 -4.061 30.220 -7.208 -0.321 0.090 C03 BYT 3 BYT C04 C04 C 0 1 N N N -48.140 -3.272 31.503 -5.947 0.513 -0.147 C04 BYT 4 BYT C05 C05 C 0 1 N N N -46.695 -2.719 31.491 -4.716 -0.393 -0.071 C05 BYT 5 BYT C06 C06 C 0 1 N N N -46.390 -1.971 32.797 -3.454 0.440 -0.307 C06 BYT 6 BYT N07 N07 N 0 1 N N N -47.488 -1.048 33.128 -2.276 -0.427 -0.235 N07 BYT 7 BYT C08 C08 C 0 1 N N N -47.484 0.304 32.600 -1.045 0.093 -0.414 C08 BYT 8 BYT O09 O09 O 0 1 N N N -46.595 0.754 31.883 -0.913 1.278 -0.633 O09 BYT 9 BYT C10 C10 C 0 1 N N N -48.650 1.214 32.988 0.167 -0.799 -0.339 C10 BYT 10 BYT C11 C11 C 0 1 N N N -48.136 2.399 33.826 1.429 0.034 -0.576 C11 BYT 11 BYT C12 C12 C 0 1 N N N -47.265 1.955 35.036 2.660 -0.872 -0.500 C12 BYT 12 BYT C13 C13 C 0 1 N N N -47.988 0.991 36.020 3.921 -0.039 -0.736 C13 BYT 13 BYT C14 C14 C 0 1 N N S -47.044 0.643 37.194 5.152 -0.944 -0.661 C14 BYT 14 BYT S15 S15 S 0 1 N N N -45.920 -0.578 36.885 5.470 -1.470 1.072 S15 BYT 15 BYT C16 C16 C 0 1 N N N -45.476 -0.871 38.480 7.278 -1.703 0.834 C16 BYT 16 BYT C17 C17 C 0 1 N N R -46.730 -0.524 39.378 7.634 -0.589 -0.171 C17 BYT 17 BYT N18 N18 N 0 1 N N N -47.084 -1.955 39.468 8.003 0.629 0.567 N18 BYT 18 BYT C19 C19 C 0 1 N N N -48.237 -2.133 38.726 7.168 1.618 0.224 C19 BYT 19 BYT O20 O20 O 0 1 N N N -48.782 -3.208 38.661 7.244 2.741 0.684 O20 BYT 20 BYT N21 N21 N 0 1 N N N -48.741 -1.010 38.050 6.240 1.258 -0.673 N21 BYT 21 BYT C22 C22 C 0 1 N N S -47.873 0.094 38.376 6.430 -0.160 -1.018 C22 BYT 22 BYT C23 C23 C 0 1 N N N -50.174 -5.157 28.729 -9.686 -0.253 0.124 C23 BYT 23 BYT O24 O24 O 0 1 N N N -50.706 -4.387 27.851 -10.271 -0.331 1.179 O24 BYT 24 BYT O25 O25 O 0 1 N N N -49.855 -6.353 28.474 -10.148 -0.913 -0.949 O25 BYT 25 BYT H1 H1 H 0 1 N N N -49.718 -5.487 31.959 -9.170 2.206 1.053 H1 BYT 26 BYT H2 H2 H 0 1 N N N -50.817 -6.195 30.982 -8.399 1.086 2.011 H2 BYT 27 BYT H4 H4 H 0 1 N N N -50.605 -3.875 30.442 -8.441 1.117 -0.937 H4 BYT 28 BYT H5 H5 H 0 1 N N N -47.731 -4.896 30.152 -7.158 -0.785 1.075 H5 BYT 29 BYT H6 H6 H 0 1 N N N -48.304 -3.388 29.361 -7.280 -1.095 -0.674 H6 BYT 30 BYT H7 H7 H 0 1 N N N -48.845 -2.432 31.583 -5.997 0.976 -1.132 H7 BYT 31 BYT H8 H8 H 0 1 N N N -48.262 -3.937 32.371 -5.875 1.287 0.617 H8 BYT 32 BYT H9 H9 H 0 1 N N N -45.989 -3.555 31.380 -4.666 -0.857 0.914 H9 BYT 33 BYT H10 H10 H 0 1 N N N -46.580 -2.027 30.643 -4.787 -1.168 -0.835 H10 BYT 34 BYT H11 H11 H 0 1 N N N -46.271 -2.699 33.613 -3.504 0.904 -1.293 H11 BYT 35 BYT H12 H12 H 0 1 N N N -45.459 -1.398 32.678 -3.383 1.215 0.456 H12 BYT 36 BYT H13 H13 H 0 1 N N N -48.237 -1.353 33.717 -2.381 -1.375 -0.059 H13 BYT 37 BYT H14 H14 H 0 1 N N N -49.134 1.595 32.077 0.218 -1.263 0.646 H14 BYT 38 BYT H15 H15 H 0 1 N N N -49.380 0.640 33.578 0.096 -1.574 -1.103 H15 BYT 39 BYT H16 H16 H 0 1 N N N -47.530 3.050 33.178 1.379 0.498 -1.561 H16 BYT 40 BYT H17 H17 H 0 1 N N N -49.002 2.962 34.205 1.500 0.809 0.188 H17 BYT 41 BYT H18 H18 H 0 1 N N N -46.370 1.446 34.649 2.710 -1.336 0.485 H18 BYT 42 BYT H19 H19 H 0 1 N N N -46.963 2.854 35.593 2.588 -1.647 -1.263 H19 BYT 43 BYT H20 H20 H 0 1 N N N -48.894 1.478 36.411 3.871 0.425 -1.721 H20 BYT 44 BYT H21 H21 H 0 1 N N N -48.268 0.069 35.490 3.993 0.736 0.027 H21 BYT 45 BYT H22 H22 H 0 1 N N N -46.494 1.542 37.509 5.034 -1.809 -1.314 H22 BYT 46 BYT H23 H23 H 0 1 N N N -45.200 -1.928 38.608 7.813 -1.562 1.773 H23 BYT 47 BYT H24 H24 H 0 1 N N N -44.624 -0.234 38.758 7.489 -2.686 0.412 H24 BYT 48 BYT H25 H25 H 0 1 N N N -46.543 0.041 40.303 8.458 -0.907 -0.810 H25 BYT 49 BYT H26 H26 H 0 1 N N N -46.585 -2.661 39.970 8.734 0.703 1.201 H26 BYT 50 BYT H27 H27 H 0 1 N N N -49.546 -0.982 37.457 5.553 1.839 -1.037 H27 BYT 51 BYT H28 H28 H 0 1 N N N -48.408 0.908 38.888 6.653 -0.264 -2.079 H28 BYT 52 BYT H29 H29 H 0 1 N N N -50.071 -6.553 27.571 -10.952 -1.438 -0.830 H29 BYT 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BYT O24 C23 DOUB N N 1 BYT O25 C23 SING N N 2 BYT C23 C02 SING N N 3 BYT C02 C03 SING N N 4 BYT C02 N01 SING N N 5 BYT C03 C04 SING N N 6 BYT C05 C04 SING N N 7 BYT C05 C06 SING N N 8 BYT O09 C08 DOUB N N 9 BYT C08 C10 SING N N 10 BYT C08 N07 SING N N 11 BYT C06 N07 SING N N 12 BYT C10 C11 SING N N 13 BYT C11 C12 SING N N 14 BYT C12 C13 SING N N 15 BYT C13 C14 SING N N 16 BYT S15 C14 SING N N 17 BYT S15 C16 SING N N 18 BYT C14 C22 SING N N 19 BYT N21 C22 SING N N 20 BYT N21 C19 SING N N 21 BYT C22 C17 SING N N 22 BYT C16 C17 SING N N 23 BYT O20 C19 DOUB N N 24 BYT C19 N18 SING N N 25 BYT C17 N18 SING N N 26 BYT N01 H1 SING N N 27 BYT N01 H2 SING N N 28 BYT C02 H4 SING N N 29 BYT C03 H5 SING N N 30 BYT C03 H6 SING N N 31 BYT C04 H7 SING N N 32 BYT C04 H8 SING N N 33 BYT C05 H9 SING N N 34 BYT C05 H10 SING N N 35 BYT C06 H11 SING N N 36 BYT C06 H12 SING N N 37 BYT N07 H13 SING N N 38 BYT C10 H14 SING N N 39 BYT C10 H15 SING N N 40 BYT C11 H16 SING N N 41 BYT C11 H17 SING N N 42 BYT C12 H18 SING N N 43 BYT C12 H19 SING N N 44 BYT C13 H20 SING N N 45 BYT C13 H21 SING N N 46 BYT C14 H22 SING N N 47 BYT C16 H23 SING N N 48 BYT C16 H24 SING N N 49 BYT C17 H25 SING N N 50 BYT N18 H26 SING N N 51 BYT N21 H27 SING N N 52 BYT C22 H28 SING N N 53 BYT O25 H29 SING N N 54 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BYT SMILES ACDLabs 12.01 "O=C1NC2C(SCC2N1)CCCCC(=O)NCCCCC(C(=O)O)N" BYT InChI InChI 1.03 "InChI=1S/C16H28N4O4S/c17-10(15(22)23)5-3-4-8-18-13(21)7-2-1-6-12-14-11(9-25-12)19-16(24)20-14/h10-12,14H,1-9,17H2,(H,18,21)(H,22,23)(H2,19,20,24)/t10-,11-,12-,14-/m0/s1" BYT InChIKey InChI 1.03 BAQMYDQNMFBZNA-MNXVOIDGSA-N BYT SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCCCNC(=O)CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)C(O)=O" BYT SMILES CACTVS 3.385 "N[CH](CCCCNC(=O)CCCC[CH]1SC[CH]2NC(=O)N[CH]12)C(O)=O" BYT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@H]2[C@@H]([C@@H](S1)CCCCC(=O)NCCCC[C@@H](C(=O)O)N)NC(=O)N2" BYT SMILES "OpenEye OEToolkits" 1.7.6 "C1C2C(C(S1)CCCCC(=O)NCCCCC(C(=O)O)N)NC(=O)N2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BYT "SYSTEMATIC NAME" ACDLabs 12.01 "N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysine" BYT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-6-[5-[(3aS,4S,6aR)-2-oxidanylidene-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]-2-azanyl-hexanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BYT "Create component" 2013-08-01 RCSB BYT "Initial release" 2014-09-10 RCSB BYT "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id BYT _pdbx_chem_comp_synonyms.name "N~6~-{5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanoyl}-L-lysine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##