data_BZ9
#
_chem_comp.id BZ9
_chem_comp.name "N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H23 N7 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-05-30
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 473.529
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code BZ9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3DA6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BZ9 N1 N1 N 0 1 Y N N -19.257 17.145 -33.167 -5.735 -0.814 0.688 N1 BZ9 1
BZ9 C4 C4 C 0 1 Y N N -17.501 18.317 -33.835 -5.424 1.271 -0.039 C4 BZ9 2
BZ9 C5 C5 C 0 1 Y N N -16.828 19.315 -34.584 -5.800 2.565 -0.406 C5 BZ9 3
BZ9 C6 C6 C 0 1 Y N N -17.567 20.201 -35.385 -7.123 2.940 -0.331 C6 BZ9 4
BZ9 C7 C7 C 0 1 Y N N -18.982 20.029 -35.414 -8.085 2.042 0.107 C7 BZ9 5
BZ9 C8 C8 C 0 1 Y N N -19.640 19.014 -34.728 -7.731 0.757 0.465 C8 BZ9 6
BZ9 C10 C10 C 0 1 Y N N -19.759 12.661 -33.049 0.282 -1.776 0.192 C10 BZ9 7
BZ9 C13 C13 C 0 1 Y N N -18.451 13.275 -35.390 -0.376 -4.451 0.507 C13 BZ9 8
BZ9 C15 C15 C 0 1 Y N N -19.906 11.858 -34.171 1.286 -2.757 0.170 C15 BZ9 9
BZ9 C17 C17 C 0 1 Y N N -20.445 12.334 -31.880 0.593 -0.410 0.035 C17 BZ9 10
BZ9 C20 C20 C 0 1 Y N N -18.854 14.598 -31.915 -2.076 -1.179 0.400 C20 BZ9 11
BZ9 C21 C21 C 0 1 Y N N -22.834 9.602 -31.769 3.680 0.452 -1.637 C21 BZ9 12
BZ9 C22 C22 C 0 1 Y N N -24.220 9.361 -31.768 4.147 0.523 -2.951 C22 BZ9 13
BZ9 C24 C24 C 0 1 Y N N -24.527 11.749 -31.619 1.983 -0.186 -3.675 C24 BZ9 14
BZ9 C26 C26 C 0 1 Y N N -22.414 10.919 -31.743 2.356 0.055 -1.411 C26 BZ9 15
BZ9 C28 C28 C 0 1 Y N N -22.018 8.502 -31.928 4.572 0.784 -0.502 C28 BZ9 16
BZ9 C35 C35 C 0 1 N N N -23.899 4.856 -30.744 5.290 1.254 4.195 C35 BZ9 17
BZ9 N34 N34 N 0 1 N N N -22.579 4.976 -31.397 4.426 0.930 3.057 N34 BZ9 18
BZ9 C32 C32 C 0 1 Y N N -21.978 6.132 -31.739 4.921 1.012 1.767 C32 BZ9 19
BZ9 N27 N27 N 0 1 Y N N -22.558 7.315 -31.590 4.126 0.716 0.751 N27 BZ9 20
BZ9 N31 N31 N 0 1 Y N N -20.791 6.108 -32.336 6.179 1.385 1.581 N31 BZ9 21
BZ9 C30 C30 C 0 1 Y N N -20.191 7.222 -32.638 6.692 1.469 0.363 C30 BZ9 22
BZ9 C29 C29 C 0 1 Y N N -20.713 8.502 -32.494 5.897 1.169 -0.728 C29 BZ9 23
BZ9 C23 C23 C 0 1 Y N N -25.060 10.479 -31.671 3.276 0.197 -3.978 C23 BZ9 24
BZ9 N25 N25 N 0 1 Y N N -23.197 11.940 -31.679 1.564 -0.246 -2.425 N25 BZ9 25
BZ9 O33 O33 O 0 1 N N N -21.125 11.147 -31.835 1.883 -0.021 -0.143 O33 BZ9 26
BZ9 C18 C18 C 0 1 Y N N -20.349 13.124 -30.735 -0.405 0.522 0.062 C18 BZ9 27
BZ9 C36 C36 C 0 1 N N N -21.106 12.755 -29.450 -0.064 1.980 -0.107 C36 BZ9 28
BZ9 C19 C19 C 0 1 Y N N -19.577 14.283 -30.776 -1.733 0.146 0.243 C19 BZ9 29
BZ9 C14 C14 C 0 1 Y N N -19.219 12.141 -35.369 0.951 -4.068 0.326 C14 BZ9 30
BZ9 C12 C12 C 0 1 Y N N -18.262 14.074 -34.271 -1.375 -3.526 0.539 C12 BZ9 31
BZ9 C11 C11 C 0 1 Y N N -18.937 13.790 -33.077 -1.066 -2.166 0.382 C11 BZ9 32
BZ9 N16 N16 N 0 1 N N N -18.102 15.692 -31.776 -3.413 -1.544 0.580 N16 BZ9 33
BZ9 C9 C9 C 0 1 Y N N -18.135 16.691 -32.618 -4.411 -0.605 0.422 C9 BZ9 34
BZ9 N2 N2 N 0 1 Y N N -17.042 17.374 -33.003 -4.231 0.620 -0.005 N2 BZ9 35
BZ9 C3 C3 C 0 1 Y N N -18.899 18.172 -33.921 -6.403 0.364 0.398 C3 BZ9 36
BZ9 H5 H5 H 0 1 N N N -15.752 19.394 -34.539 -5.056 3.270 -0.747 H5 BZ9 37
BZ9 H6 H6 H 0 1 N N N -17.083 20.980 -35.955 -7.414 3.941 -0.614 H6 BZ9 38
BZ9 H7 H7 H 0 1 N N N -19.572 20.721 -35.997 -9.119 2.348 0.162 H7 BZ9 39
BZ9 H8 H8 H 0 1 N N N -20.708 18.886 -34.824 -8.484 0.062 0.804 H8 BZ9 40
BZ9 H13 H13 H 0 1 N N N -17.973 13.559 -36.316 -0.616 -5.497 0.627 H13 BZ9 41
BZ9 H15 H15 H 0 1 N N N -20.560 10.999 -34.126 2.319 -2.474 0.030 H15 BZ9 42
BZ9 H22 H22 H 0 1 N N N -24.619 8.360 -31.839 5.162 0.826 -3.162 H22 BZ9 43
BZ9 H24 H24 H 0 1 N N N -25.185 12.601 -31.529 1.304 -0.441 -4.475 H24 BZ9 44
BZ9 H35 H35 H 0 1 N N N -23.767 4.826 -29.652 4.730 1.133 5.122 H35 BZ9 45
BZ9 H35A H35A H 0 0 N N N -24.522 5.721 -31.014 6.150 0.584 4.200 H35A BZ9 46
BZ9 H30 H30 H 0 1 N N N -19.191 7.145 -33.039 7.718 1.774 0.223 H30 BZ9 47
BZ9 H29 H29 H 0 1 N N N -20.185 9.399 -32.781 6.290 1.230 -1.732 H29 BZ9 48
BZ9 H23 H23 H 0 1 N N N -26.131 10.344 -31.637 3.604 0.242 -5.005 H23 BZ9 49
BZ9 H36 H36 H 0 1 N N N -20.394 12.667 -28.617 -0.095 2.240 -1.165 H36 BZ9 50
BZ9 H36A H36A H 0 0 N N N -21.843 13.539 -29.221 -0.787 2.588 0.437 H36A BZ9 51
BZ9 H36B H36B H 0 0 N N N -21.624 11.795 -29.593 0.936 2.167 0.284 H36B BZ9 52
BZ9 H19 H19 H 0 1 N N N -19.542 14.938 -29.918 -2.504 0.901 0.256 H19 BZ9 53
BZ9 H14 H14 H 0 1 N N N -19.295 11.494 -36.230 1.725 -4.821 0.308 H14 BZ9 54
BZ9 H12 H12 H 0 1 N N N -17.591 14.919 -34.321 -2.399 -3.837 0.680 H12 BZ9 55
BZ9 HN16 HN16 H 0 0 N N N -17.485 15.750 -30.991 -3.639 -2.457 0.816 HN16 BZ9 56
BZ9 HN1 HN1 H 0 1 N N N -20.181 16.785 -33.037 -6.133 -1.636 1.016 HN1 BZ9 57
BZ9 H221 H221 H 0 0 N N N -24.391 3.931 -31.079 5.633 2.285 4.109 H221 BZ9 58
BZ9 H231 H231 H 0 0 N N N -21.944 4.545 -30.757 3.507 0.659 3.207 H231 BZ9 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BZ9 N1 C9 SING Y N 1
BZ9 N1 HN1 SING N N 2
BZ9 C4 N2 SING Y N 3
BZ9 C5 C4 DOUB Y N 4
BZ9 C5 H5 SING N N 5
BZ9 C6 C5 SING Y N 6
BZ9 C6 H6 SING N N 7
BZ9 C7 C6 DOUB Y N 8
BZ9 C7 C8 SING Y N 9
BZ9 C7 H7 SING N N 10
BZ9 C8 C3 DOUB Y N 11
BZ9 C8 H8 SING N N 12
BZ9 C10 C17 SING Y N 13
BZ9 C13 C14 DOUB Y N 14
BZ9 C13 C12 SING Y N 15
BZ9 C13 H13 SING N N 16
BZ9 C15 C10 DOUB Y N 17
BZ9 C15 H15 SING N N 18
BZ9 C17 O33 SING N N 19
BZ9 C17 C18 DOUB Y N 20
BZ9 C20 N16 SING N N 21
BZ9 C20 C19 DOUB Y N 22
BZ9 C21 C22 DOUB Y N 23
BZ9 C21 C26 SING Y N 24
BZ9 C22 C23 SING Y N 25
BZ9 C22 H22 SING N N 26
BZ9 C24 H24 SING N N 27
BZ9 C26 N25 DOUB Y N 28
BZ9 C28 C21 SING Y N 29
BZ9 C28 N27 SING Y N 30
BZ9 C35 H35 SING N N 31
BZ9 C35 H35A SING N N 32
BZ9 N34 C35 SING N N 33
BZ9 C32 N34 SING N N 34
BZ9 C32 N27 DOUB Y N 35
BZ9 N31 C32 SING Y N 36
BZ9 C30 N31 DOUB Y N 37
BZ9 C30 C29 SING Y N 38
BZ9 C30 H30 SING N N 39
BZ9 C29 C28 DOUB Y N 40
BZ9 C29 H29 SING N N 41
BZ9 C23 C24 DOUB Y N 42
BZ9 C23 H23 SING N N 43
BZ9 N25 C24 SING Y N 44
BZ9 O33 C26 SING N N 45
BZ9 C18 C36 SING N N 46
BZ9 C36 H36 SING N N 47
BZ9 C36 H36A SING N N 48
BZ9 C36 H36B SING N N 49
BZ9 C19 C18 SING Y N 50
BZ9 C19 H19 SING N N 51
BZ9 C14 C15 SING Y N 52
BZ9 C14 H14 SING N N 53
BZ9 C12 C11 DOUB Y N 54
BZ9 C12 H12 SING N N 55
BZ9 C11 C10 SING Y N 56
BZ9 C11 C20 SING Y N 57
BZ9 N16 HN16 SING N N 58
BZ9 C9 N16 SING N N 59
BZ9 N2 C9 DOUB Y N 60
BZ9 C3 N1 SING Y N 61
BZ9 C3 C4 SING Y N 62
BZ9 C35 H221 SING N N 63
BZ9 N34 H231 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BZ9 SMILES ACDLabs 10.04 "n1ccc(nc1NC)c6cccnc6Oc3c2c(cccc2)c(cc3C)Nc5nc4ccccc4n5"
BZ9 SMILES_CANONICAL CACTVS 3.341 "CNc1nccc(n1)c2cccnc2Oc3c(C)cc(Nc4[nH]c5ccccc5n4)c6ccccc36"
BZ9 SMILES CACTVS 3.341 "CNc1nccc(n1)c2cccnc2Oc3c(C)cc(Nc4[nH]c5ccccc5n4)c6ccccc36"
BZ9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1cc(c2ccccc2c1Oc3c(cccn3)c4ccnc(n4)NC)Nc5[nH]c6ccccc6n5"
BZ9 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1cc(c2ccccc2c1Oc3c(cccn3)c4ccnc(n4)NC)Nc5[nH]c6ccccc6n5"
BZ9 InChI InChI 1.03 "InChI=1S/C28H23N7O/c1-17-16-24(35-28-33-22-11-5-6-12-23(22)34-28)18-8-3-4-9-19(18)25(17)36-26-20(10-7-14-30-26)21-13-15-31-27(29-2)32-21/h3-16H,1-2H3,(H,29,31,32)(H2,33,34,35)"
BZ9 InChIKey InChI 1.03 JXKDTYDBDDKIPY-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
BZ9 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[3-methyl-4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-1H-benzimidazol-2-amine"
BZ9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[3-methyl-4-[3-(2-methylaminopyrimidin-4-yl)pyridin-2-yl]oxy-naphthalen-1-yl]-1H-benzimidazol-2-amine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BZ9 "Create component" 2008-05-30 RCSB
BZ9 "Modify aromatic_flag" 2011-06-04 RCSB
BZ9 "Modify descriptor" 2011-06-04 RCSB
#