data_BZD # _chem_comp.id BZD _chem_comp.name "N-[(phenylcarbonyl)carbamoyl]-beta-D-glucopyranosylamine" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H18 N2 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;N-BENZOYL-N'-BETA-D-GLUCOPYRANOSYL UREA; N-[(phenylcarbonyl)carbamoyl]-beta-D-glucosylamine; N-[(phenylcarbonyl)carbamoyl]-D-glucosylamine; N-[(phenylcarbonyl)carbamoyl]-glucosylamine ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-09-20 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 326.302 _chem_comp.one_letter_code ? _chem_comp.three_letter_code BZD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1K06 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 BZD "N-BENZOYL-N'-BETA-D-GLUCOPYRANOSYL UREA" PDB ? 2 BZD "N-[(phenylcarbonyl)carbamoyl]-beta-D-glucosylamine" PDB ? 3 BZD "N-[(phenylcarbonyl)carbamoyl]-D-glucosylamine" PDB ? 4 BZD "N-[(phenylcarbonyl)carbamoyl]-glucosylamine" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal BZD O5 O5 O 0 1 N N N 19.349 12.570 58.364 0.737 0.652 -2.201 O5 BZD 1 BZD C1 C1 C 0 1 N N R 18.309 13.207 57.563 -0.354 -0.101 -1.678 C1 BZD 2 BZD C2 C2 C 0 1 N N R 16.923 13.187 58.235 -1.601 0.129 -2.535 C2 BZD 3 BZD O2 O2 O 0 1 N N N 15.949 13.828 57.386 -2.698 -0.606 -1.989 O2 BZD 4 BZD C3 C3 C 0 1 N N S 17.025 13.890 59.621 -1.320 -0.348 -3.964 C3 BZD 5 BZD O3 O3 O 0 1 N N N 15.737 13.880 60.250 -2.419 -0.005 -4.809 O3 BZD 6 BZD C4 C4 C 0 1 N N S 18.110 13.137 60.472 -0.045 0.338 -4.468 C4 BZD 7 BZD O4 O4 O 0 1 N N N 18.200 13.758 61.769 0.317 -0.202 -5.740 O4 BZD 8 BZD C5 C5 C 0 1 N N R 19.497 13.202 59.682 1.083 0.090 -3.465 C5 BZD 9 BZD C6 C6 C 0 1 N N N 20.642 12.465 60.449 2.370 0.742 -3.977 C6 BZD 10 BZD O6 O6 O 0 1 N N N 20.387 11.051 60.465 3.426 0.509 -3.043 O6 BZD 11 BZD N1 N1 N 0 1 N N N 18.190 12.567 56.283 -0.624 0.324 -0.302 N1 BZD 12 BZD C7 C7 C 0 1 N N N 18.701 13.120 55.152 -0.003 -0.285 0.726 C7 BZD 13 BZD O7 O7 O 0 1 N N N 19.265 14.229 55.253 0.781 -1.189 0.512 O7 BZD 14 BZD N2 N2 N 0 1 N N N 18.562 12.505 53.916 -0.252 0.105 1.991 N2 BZD 15 BZD C8 C8 C 0 1 N N N 17.951 11.292 53.665 0.368 -0.504 3.020 C8 BZD 16 BZD O8 O8 O 0 1 N N N 17.430 10.623 54.548 1.153 -1.407 2.806 O8 BZD 17 BZD C9 C9 C 0 1 Y N N 17.863 10.706 52.265 0.095 -0.075 4.407 C9 BZD 18 BZD C10 C10 C 0 1 Y N N 17.204 9.429 52.018 0.737 -0.705 5.475 C10 BZD 19 BZD C11 C11 C 0 1 Y N N 17.120 8.890 50.696 0.478 -0.300 6.768 C11 BZD 20 BZD C12 C12 C 0 1 Y N N 17.714 9.602 49.593 -0.416 0.728 7.007 C12 BZD 21 BZD C13 C13 C 0 1 Y N N 18.367 10.874 49.820 -1.056 1.356 5.954 C13 BZD 22 BZD C14 C14 C 0 1 Y N N 18.455 11.419 51.150 -0.801 0.965 4.656 C14 BZD 23 BZD H1 H1 H 0 1 N N N 18.629 14.269 57.451 -0.099 -1.161 -1.686 H1 BZD 24 BZD H2 H2 H 0 1 N N N 16.587 12.135 58.391 -1.844 1.191 -2.547 H2 BZD 25 BZD HO2 HO2 H 0 1 N Y N 15.094 13.815 57.800 -2.835 -0.278 -1.090 HO2 BZD 26 BZD H3 H3 H 0 1 N N N 17.335 14.955 59.518 -1.179 -1.429 -3.967 H3 BZD 27 BZD HO3 HO3 H 0 1 N Y N 15.799 14.308 61.095 -3.199 -0.448 -4.447 HO3 BZD 28 BZD H4 H4 H 0 1 N N N 17.839 12.066 60.625 -0.222 1.409 -4.563 H4 BZD 29 BZD HO4 HO4 H 0 1 N Y N 18.856 13.302 62.283 -0.423 -0.031 -6.338 HO4 BZD 30 BZD H5 H5 H 0 1 N N N 19.767 14.279 59.581 1.240 -0.982 -3.354 H5 BZD 31 BZD H61 H61 H 0 1 N N N 21.647 12.704 60.031 2.214 1.815 -4.088 H61 BZD 32 BZD H62 H62 H 0 1 N N N 20.790 12.875 61.475 2.636 0.311 -4.942 H62 BZD 33 BZD HO6 HO6 H 0 1 N Y N 21.083 10.603 60.931 4.216 0.935 -3.402 HO6 BZD 34 BZD HN1 HN1 H 0 1 N N N 17.200 12.381 56.118 -1.251 1.044 -0.132 HN1 BZD 35 BZD HN2 HN2 H 0 1 N N N 18.948 12.994 53.109 -0.879 0.826 2.162 HN2 BZD 36 BZD H101 H101 H 0 0 N N N 16.759 8.857 52.850 1.435 -1.508 5.290 H101 BZD 37 BZD H111 H111 H 0 0 N N N 16.600 7.931 50.528 0.973 -0.786 7.595 H111 BZD 38 BZD H121 H121 H 0 0 N N N 17.668 9.174 48.577 -0.615 1.041 8.021 H121 BZD 39 BZD H131 H131 H 0 0 N N N 18.800 11.432 48.973 -1.753 2.157 6.148 H131 BZD 40 BZD H141 H141 H 0 0 N N N 18.973 12.378 51.314 -1.301 1.456 3.834 H141 BZD 41 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BZD O5 C1 SING N N 1 BZD O5 C5 SING N N 2 BZD C1 C2 SING N N 3 BZD C1 N1 SING N N 4 BZD C1 H1 SING N N 5 BZD C2 O2 SING N N 6 BZD C2 C3 SING N N 7 BZD C2 H2 SING N N 8 BZD O2 HO2 SING N N 9 BZD C3 O3 SING N N 10 BZD C3 C4 SING N N 11 BZD C3 H3 SING N N 12 BZD O3 HO3 SING N N 13 BZD C4 O4 SING N N 14 BZD C4 C5 SING N N 15 BZD C4 H4 SING N N 16 BZD O4 HO4 SING N N 17 BZD C5 C6 SING N N 18 BZD C5 H5 SING N N 19 BZD C6 O6 SING N N 20 BZD C6 H61 SING N N 21 BZD C6 H62 SING N N 22 BZD O6 HO6 SING N N 23 BZD N1 C7 SING N N 24 BZD N1 HN1 SING N N 25 BZD C7 O7 DOUB N N 26 BZD C7 N2 SING N N 27 BZD N2 C8 SING N N 28 BZD N2 HN2 SING N N 29 BZD C8 O8 DOUB N N 30 BZD C8 C9 SING N N 31 BZD C9 C10 DOUB Y N 32 BZD C9 C14 SING Y N 33 BZD C10 C11 SING Y N 34 BZD C10 H101 SING N N 35 BZD C11 C12 DOUB Y N 36 BZD C11 H111 SING N N 37 BZD C12 C13 SING Y N 38 BZD C12 H121 SING N N 39 BZD C13 C14 DOUB Y N 40 BZD C13 H131 SING N N 41 BZD C14 H141 SING N N 42 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor BZD SMILES ACDLabs 10.04 "O=C(NC1OC(C(O)C(O)C1O)CO)NC(=O)c2ccccc2" BZD SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](NC(=O)NC(=O)c2ccccc2)[C@H](O)[C@@H](O)[C@@H]1O" BZD SMILES CACTVS 3.341 "OC[CH]1O[CH](NC(=O)NC(=O)c2ccccc2)[CH](O)[CH](O)[CH]1O" BZD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(=O)NC(=O)N[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O" BZD SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc(cc1)C(=O)NC(=O)NC2C(C(C(C(O2)CO)O)O)O" BZD InChI InChI 1.03 "InChI=1S/C14H18N2O7/c17-6-8-9(18)10(19)11(20)13(23-8)16-14(22)15-12(21)7-4-2-1-3-5-7/h1-5,8-11,13,17-20H,6H2,(H2,15,16,21,22)/t8-,9-,10+,11-,13-/m1/s1" BZD InChIKey InChI 1.03 JSBCZGSPFATCOV-BZNQNGANSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BZD "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(phenylcarbonyl)carbamoyl]-beta-D-glucopyranosylamine" BZD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]carbamoyl]benzamide" BZD "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 "N-benzoyl-N'-b-D-glucopyranosyl urea" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support BZD "CARBOHYDRATE ISOMER" D PDB ? BZD "CARBOHYDRATE RING" pyranose PDB ? BZD "CARBOHYDRATE ANOMER" beta PDB ? BZD "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site BZD "Create component" 2001-09-20 RCSB BZD "Modify descriptor" 2011-06-04 RCSB BZD "Other modification" 2020-07-03 RCSB BZD "Modify name" 2020-07-17 RCSB BZD "Modify synonyms" 2020-07-17 RCSB BZD "Modify linking type" 2020-07-17 RCSB BZD "Modify leaving atom flag" 2020-07-17 RCSB ##