data_C0N # _chem_comp.id C0N _chem_comp.name "2-[4-[4-[bis(oxidanylidene)-$l^5-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1H-pyrazol-3-yl)amino]-N-prop-2-ynyl-pyrimidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H25 N8 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-05-23 _chem_comp.pdbx_modified_date 2024-02-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 549.582 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C0N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JF4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C0N N1 N1 N 0 1 Y N N N N N -1.944 -34.293 2.206 -3.559 -0.687 -0.068 N1 C0N 1 C0N N3 N2 N 0 1 N N N N N N -0.103 -37.508 2.853 -5.666 -2.408 0.726 N3 C0N 2 C0N C4 C1 C 0 1 Y N N N N N -1.614 -34.005 4.989 -3.588 1.965 0.454 C4 C0N 3 C0N C5 C2 C 0 1 N N N N N N -0.580 -36.365 2.121 -5.720 -1.091 1.006 C5 C0N 4 C0N C6 C3 C 0 1 N N N N N N 0.545 -38.601 2.179 -6.759 -3.290 1.141 C6 C0N 5 C0N C7 C4 C 0 1 N N N N N N -0.227 -39.040 0.943 -6.464 -4.670 0.720 C7 C0N 6 C0N C8 C5 C 0 1 N N N N N N -0.822 -39.379 -0.035 -6.228 -5.770 0.385 C8 C0N 7 C0N C10 C6 C 0 1 Y N N N N N -2.630 -31.685 6.794 -1.336 3.659 -0.316 C10 C0N 8 C0N C13 C7 C 0 1 N N N N N N -5.331 -29.744 8.216 1.972 5.542 -0.506 C13 C0N 9 C0N C15 C8 C 0 1 N N N N N N -3.216 -32.157 0.796 -1.666 -1.893 -1.306 C15 C0N 10 C0N C17 C9 C 0 1 N N N N N N -4.413 -29.993 2.313 0.945 -0.608 -1.307 C17 C0N 11 C0N C20 C10 C 0 1 Y N N N N N -6.016 -27.923 0.894 3.062 -2.485 -0.985 C20 C0N 12 C0N C21 C11 C 0 1 Y N N N N N -5.421 -26.719 0.688 3.583 -1.174 -1.410 C21 C0N 13 C0N C22 C12 C 0 1 Y N N N N N -5.970 -25.454 1.369 4.799 -0.766 -1.003 C22 C0N 14 C0N C24 C13 C 0 1 Y N N N N N -7.699 -26.888 2.407 5.085 -2.965 0.301 C24 C0N 15 C0N C1 C14 C 0 1 Y N N N N N -1.073 -35.029 4.334 -4.657 1.163 0.870 C1 C0N 16 C0N C2 C15 C 0 1 Y N N N N N -1.249 -35.194 2.860 -4.611 -0.197 0.586 C2 C0N 17 C0N C3 C16 C 0 1 Y N N N N N -2.536 -33.171 2.931 -2.567 0.102 -0.446 C3 C0N 18 C0N N2 N3 N 0 1 Y N N N N N -2.377 -33.035 4.263 -2.574 1.403 -0.193 N2 C0N 19 C0N O1 O1 O 0 1 N N N N N N -0.443 -36.292 0.905 -6.675 -0.635 1.603 O1 C0N 20 C0N N4 N4 N 0 1 N N N N N N -1.413 -33.897 6.411 -3.588 3.326 0.715 N4 C0N 21 C0N C9 C17 C 0 1 Y N N N N N -2.152 -32.953 7.206 -2.469 4.101 0.387 C9 C0N 22 C0N C11 C18 C 0 1 Y N N N N N -3.279 -31.096 7.856 -0.484 4.703 -0.429 C11 C0N 23 C0N N5 N5 N 0 1 Y N N N N N -3.208 -31.984 8.940 -1.051 5.767 0.178 N5 C0N 24 C0N N6 N6 N 0 1 Y N N N N N -2.509 -33.130 8.527 -2.295 5.368 0.682 N6 C0N 25 C0N C12 C19 C 0 1 N N N N N N -4.030 -29.606 7.921 0.860 4.682 -1.110 C12 C0N 26 C0N C14 C20 C 0 1 N N N N N N -4.219 -29.020 6.728 1.312 5.959 -1.822 C14 C0N 27 C0N N7 N7 N 0 1 N N N N N N -3.297 -32.189 2.230 -1.491 -0.446 -1.123 N7 C0N 28 C0N C16 C21 C 0 1 N N N N N N -4.384 -31.388 0.195 -0.552 -2.428 -2.212 C16 C0N 29 C0N N8 N8 N 0 1 N N N N N N -4.756 -30.219 0.941 0.744 -2.025 -1.646 N8 C0N 30 C0N C18 C22 C 0 1 N N N N N N -4.101 -31.303 3.035 -0.228 -0.144 -0.437 C18 C0N 31 C0N C19 C23 C 0 1 N N N N N N -5.536 -29.229 0.223 1.722 -2.930 -1.443 C19 C0N 32 C0N C23 C24 C 0 1 Y N N N N N -7.055 -25.517 2.199 5.618 -1.643 -0.123 C23 C0N 33 C0N C25 C25 C 0 1 Y N N N N N -7.221 -28.012 1.806 3.866 -3.359 -0.114 C25 C0N 34 C0N O2 O2 O 0 1 N N N N N N -7.611 -24.370 2.869 6.726 -1.278 0.250 O2 C0N 35 C0N O3 O3 O 0 1 N N N N N N -5.815 -29.435 -0.953 1.507 -4.110 -1.635 O3 C0N 36 C0N S1 S1 S 1 1 N N N N N N -6.780 -23.147 3.253 6.799 -0.424 1.672 S1 C0N 37 C0N O4 O4 O 0 1 N N N N N N -5.856 -22.592 2.193 7.412 1.118 1.684 O4 C0N 38 C0N O5 O5 O 0 1 N N N N N N -7.693 -21.965 3.491 6.260 -1.114 3.082 O5 C0N 39 C0N H2 H1 H 0 1 N N N N N N -0.224 -37.543 3.845 -4.903 -2.772 0.250 H2 C0N 40 C0N H4 H2 H 0 1 N N N N N N 0.621 -39.452 2.872 -6.863 -3.256 2.226 H4 C0N 41 C0N H3 H3 H 0 1 N N N N N N 1.554 -38.284 1.875 -7.688 -2.960 0.677 H3 C0N 42 C0N H5 H4 H 0 1 N N N N N N -1.350 -39.680 -0.903 -6.017 -6.754 0.085 H5 C0N 43 C0N H7 H5 H 0 1 N N N N N N -2.506 -31.253 5.812 -1.173 2.661 -0.696 H7 C0N 44 C0N H11 H6 H 0 1 N N N N N N -5.855 -30.709 8.149 1.731 6.123 0.384 H11 C0N 45 C0N H26 H7 H 0 1 N N N N N N -5.847 -29.096 8.940 2.990 5.155 -0.554 H26 C0N 46 C0N H14 H9 H 0 1 N N N N N N -3.230 -33.188 0.413 -1.618 -2.390 -0.338 H14 C0N 47 C0N H15 H10 H 0 1 N N N N N N -2.275 -31.669 0.501 -2.635 -2.087 -1.768 H15 C0N 48 C0N H18 H11 H 0 1 N N N N N N -3.528 -29.341 2.358 1.878 -0.492 -0.755 H18 C0N 49 C0N H19 H12 H 0 1 N N N N N N -5.258 -29.500 2.816 0.983 -0.012 -2.219 H19 C0N 50 C0N H22 H13 H 0 1 N N N N N N -4.558 -26.650 0.043 2.988 -0.539 -2.049 H22 C0N 51 C0N H23 H14 H 0 1 N N N N N N -5.492 -24.502 1.189 5.180 0.195 -1.316 H23 C0N 52 C0N H24 H15 H 0 1 N N N N N N -8.562 -26.967 3.052 5.673 -3.607 0.940 H24 C0N 53 C0N H1 H16 H 0 1 N N N N N N -0.493 -35.758 4.881 -5.496 1.590 1.400 H1 C0N 54 C0N H6 H17 H 0 1 N N N N N N -0.744 -34.492 6.856 -4.363 3.741 1.125 H6 C0N 55 C0N H8 H18 H 0 1 N N N N N N -3.590 -31.828 9.851 -0.664 6.654 0.251 H8 C0N 56 C0N H9 H19 H 0 1 N N N N N N -3.486 -28.971 8.636 1.146 3.729 -1.556 H9 C0N 57 C0N H27 H20 H 0 1 N N N N N N -4.073 -27.942 6.567 0.637 6.815 -1.798 H27 C0N 58 C0N H12 H21 H 0 1 N N N N N N -4.081 -29.554 5.776 1.895 5.847 -2.736 H12 C0N 59 C0N H16 H23 H 0 1 N N N N N N -4.106 -31.076 -0.823 -0.609 -3.516 -2.259 H16 C0N 60 C0N H17 H24 H 0 1 N N N N N N -5.254 -32.060 0.148 -0.660 -2.010 -3.213 H17 C0N 61 C0N H20 H25 H 0 1 N N N N N N -5.048 -31.807 3.280 -0.200 -0.666 0.519 H20 C0N 62 C0N H21 H26 H 0 1 N N N N N N -3.556 -31.075 3.963 -0.153 0.930 -0.268 H21 C0N 63 C0N H25 H27 H 0 1 N N N N N N -7.700 -28.964 1.979 3.478 -4.319 0.193 H25 C0N 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C0N O3 C19 DOUB N N 1 C0N C8 C7 TRIP N N 2 C0N C16 C15 SING N N 3 C0N C16 N8 SING N N 4 C0N C19 C20 SING N N 5 C0N C19 N8 SING N N 6 C0N C21 C20 DOUB Y N 7 C0N C21 C22 SING Y N 8 C0N C15 N7 SING N N 9 C0N C20 C25 SING Y N 10 C0N O1 C5 DOUB N N 11 C0N N8 C17 SING N N 12 C0N C7 C6 SING N N 13 C0N C22 C23 DOUB Y N 14 C0N C25 C24 DOUB Y N 15 C0N C5 N3 SING N N 16 C0N C5 C2 SING N N 17 C0N C6 N3 SING N N 18 C0N O4 S1 DOUB N N 19 C0N C23 C24 SING Y N 20 C0N C23 O2 SING N N 21 C0N N1 C2 DOUB Y N 22 C0N N1 C3 SING Y N 23 C0N N7 C3 SING N N 24 C0N N7 C18 SING N N 25 C0N C17 C18 SING N N 26 C0N C2 C1 SING Y N 27 C0N O2 S1 SING N N 28 C0N C3 N2 DOUB Y N 29 C0N S1 O5 DOUB N N 30 C0N N2 C4 SING Y N 31 C0N C1 C4 DOUB Y N 32 C0N C4 N4 SING N N 33 C0N N4 C9 SING N N 34 C0N C14 C12 SING N N 35 C0N C10 C9 SING Y N 36 C0N C10 C11 DOUB Y N 37 C0N C9 N6 DOUB Y N 38 C0N C11 C12 SING N N 39 C0N C11 N5 SING Y N 40 C0N C12 C13 SING N N 41 C0N N6 N5 SING Y N 42 C0N N3 H2 SING N N 43 C0N C6 H4 SING N N 44 C0N C6 H3 SING N N 45 C0N C8 H5 SING N N 46 C0N C10 H7 SING N N 47 C0N C13 H11 SING N N 48 C0N C13 H26 SING N N 49 C0N C15 H14 SING N N 50 C0N C15 H15 SING N N 51 C0N C17 H18 SING N N 52 C0N C17 H19 SING N N 53 C0N C21 H22 SING N N 54 C0N C22 H23 SING N N 55 C0N C24 H24 SING N N 56 C0N C1 H1 SING N N 57 C0N N4 H6 SING N N 58 C0N N5 H8 SING N N 59 C0N C12 H9 SING N N 60 C0N C14 H27 SING N N 61 C0N C14 H12 SING N N 62 C0N C16 H16 SING N N 63 C0N C16 H17 SING N N 64 C0N C18 H20 SING N N 65 C0N C18 H21 SING N N 66 C0N C25 H25 SING N N 67 C0N C13 C14 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C0N InChI InChI 1.06 "InChI=1S/C25H24N8O5S/c1-2-9-26-23(34)20-15-21(28-22-14-19(30-31-22)16-3-4-16)29-25(27-20)33-12-10-32(11-13-33)24(35)17-5-7-18(8-6-17)38-39(36)37/h1,5-8,14-16H,3-4,9-13H2,(H2-,26,27,28,29,30,31,34)/p+1" C0N InChIKey InChI 1.06 VFSFZYIOAHMZEA-UHFFFAOYSA-O C0N SMILES_CANONICAL CACTVS 3.385 "O=C(NCC#C)c1cc(Nc2cc([nH]n2)C3CC3)nc(n1)N4CCN(CC4)C(=O)c5ccc(O[S+](=O)=O)cc5" C0N SMILES CACTVS 3.385 "O=C(NCC#C)c1cc(Nc2cc([nH]n2)C3CC3)nc(n1)N4CCN(CC4)C(=O)c5ccc(O[S+](=O)=O)cc5" C0N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C#CCNC(=O)c1cc(nc(n1)N2CCN(CC2)C(=O)c3ccc(cc3)O[S+](=O)=O)Nc4cc([nH]n4)C5CC5" C0N SMILES "OpenEye OEToolkits" 2.0.7 "C#CCNC(=O)c1cc(nc(n1)N2CCN(CC2)C(=O)c3ccc(cc3)O[S+](=O)=O)Nc4cc([nH]n4)C5CC5" # _pdbx_chem_comp_identifier.comp_id C0N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[4-[4-[bis(oxidanylidene)-$l^{5}-sulfanyl]oxyphenyl]carbonylpiperazin-1-yl]-6-[(5-cyclopropyl-1~{H}-pyrazol-3-yl)amino]-~{N}-prop-2-ynyl-pyrimidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C0N "Create component" 2023-05-23 PDBC C0N "Initial release" 2024-02-14 RCSB #