data_C0T # _chem_comp.id C0T _chem_comp.name "Calicheamicin T0" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H28 N2 O9 S3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "methyl {(1R,4Z,8S,13E)-8-{[4,6-dideoxy-4-(hydroxyamino)-beta-D-glucopyranosyl]oxy}-1-hydroxy-13-[2-(methyltrisulfanyl)ethylidene]-11-oxobicyclo[7.3.1]trideca-4,9-diene-2,6-diyn-10-yl}carbamate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-10-21 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 584.682 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C0T _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3OTI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C0T C1 C1 C 0 1 N N N 7.163 -8.421 16.345 3.939 -1.053 -1.226 C1 C0T 1 C0T N1 N1 N 0 1 N N N 8.190 -7.436 14.598 3.249 1.252 -1.598 N1 C0T 2 C0T O1 O1 O 0 1 N N N 7.995 -9.253 16.325 4.930 -0.828 -1.892 O1 C0T 3 C0T S1 S1 S 0 1 N N N 1.385 -7.652 15.017 -1.430 -3.098 -1.190 S1 C0T 4 C0T C2 C2 C 0 1 N N N 7.091 -7.409 15.314 3.008 -0.009 -1.038 C2 C0T 5 C0T N2 N2 N 0 1 N N N 1.735 -2.315 10.125 -4.504 4.306 0.017 N2 C0T 6 C0T O2 O2 O 0 1 N N N 7.714 -7.180 12.500 5.185 1.435 -0.527 O2 C0T 7 C0T S2 S2 S 0 1 N N N 0.294 -6.801 16.518 -2.425 -3.907 0.409 S2 C0T 8 C0T C3 C3 C 0 1 N N N 6.042 -6.624 15.210 1.880 -0.226 -0.318 C3 C0T 9 C0T O3 O3 O 0 1 N N N 9.759 -7.597 12.888 4.537 3.194 -1.716 O3 C0T 10 C0T S3 S3 S 0 1 N N N -0.887 -5.349 15.667 -4.347 -3.247 0.139 S3 C0T 11 C0T C4 C4 C 0 1 N N N 4.958 -6.810 16.166 1.613 -1.519 0.214 C4 C0T 12 C0T O4 O4 O 0 1 N N N 4.571 -7.360 18.527 2.273 -3.779 0.692 O4 C0T 13 C0T C5 C5 C 0 1 N N R 5.535 -7.082 17.529 2.763 -2.461 0.490 C5 C0T 14 C0T O5 O5 O 0 1 N N N 4.817 -5.276 13.459 -0.403 0.536 -0.247 O5 C0T 15 C0T C6 C6 C 0 1 N N N 6.247 -8.391 17.492 3.765 -2.424 -0.651 C6 C0T 16 C0T O6 O6 O 0 1 N N N 0.541 -2.211 10.372 -5.159 4.690 1.268 O6 C0T 17 C0T C7 C7 C 0 1 N N N 8.452 -7.394 13.352 4.354 1.942 -1.254 C7 C0T 18 C0T O7 O7 O 0 1 N N N 3.374 -3.594 13.087 -1.406 2.408 0.722 O7 C0T 19 C0T C8 C8 C 0 1 N N N 9.973 -7.231 11.583 5.751 3.877 -1.304 C8 C0T 20 C0T O8 O8 O 0 1 N N N 5.938 -4.554 10.747 -2.533 0.413 -2.137 O8 C0T 21 C0T C9 C9 C 0 1 N N N 6.269 -5.909 17.978 3.410 -1.974 1.737 C9 C0T 22 C0T O9 O9 O 0 1 N N N 3.533 -4.434 9.179 -4.906 1.842 -1.422 O9 C0T 23 C0T C10 C10 C 0 1 N N N 6.855 -4.927 18.140 3.430 -1.251 2.699 C10 C0T 24 C0T C11 C11 C 0 1 N N N 7.552 -3.677 17.995 2.960 -0.581 3.878 C11 C0T 25 C0T C12 C12 C 0 1 N N N 7.698 -3.134 16.796 2.101 0.452 3.803 C12 C0T 26 C0T C13 C13 C 0 1 N N N 7.179 -3.771 15.676 1.625 0.947 2.549 C13 C0T 27 C0T C14 C14 C 0 1 N N N 6.672 -4.481 14.945 1.127 1.161 1.487 C14 C0T 28 C0T C15 C15 C 0 1 N N S 5.984 -5.508 14.228 0.949 0.909 0.027 C15 C0T 29 C0T C16 C16 C 0 1 N N N 3.645 -6.790 16.040 0.357 -1.897 0.467 C16 C0T 30 C0T C17 C17 C 0 1 N N N 2.803 -6.576 14.835 -0.741 -1.564 -0.509 C17 C0T 31 C0T C18 C18 C 0 1 N N N -2.353 -6.193 15.260 -5.133 -4.627 -0.737 C18 C0T 32 C0T C19 C19 C 0 1 N N R 4.649 -4.095 12.718 -1.276 1.644 -0.479 C19 C0T 33 C0T C20 C20 C 0 1 N N R 4.635 -4.520 11.250 -2.652 1.128 -0.906 C20 C0T 34 C0T C21 C21 C 0 1 N N S 3.801 -3.659 10.293 -3.599 2.318 -1.094 C21 C0T 35 C0T C22 C22 C 0 1 N N S 2.506 -3.224 10.930 -3.657 3.121 0.209 C22 C0T 36 C0T C23 C23 C 0 1 N N R 2.892 -2.593 12.253 -2.242 3.560 0.593 C23 C0T 37 C0T C24 C24 C 0 1 N N N 1.694 -1.997 12.926 -2.284 4.311 1.925 C24 C0T 38 C0T HN1 HN1 H 0 1 N N N 9.013 -7.506 15.161 2.620 1.629 -2.233 HN1 C0T 39 C0T HO4 HO4 H 0 1 N N N 5.009 -7.520 19.355 2.964 -4.432 0.873 HO4 C0T 40 C0T H6 H6 H 0 1 N N N 5.513 -9.204 17.395 3.420 -3.094 -1.438 H6 C0T 41 C0T H6A H6A H 0 1 N N N 6.820 -8.522 18.422 4.730 -2.777 -0.288 H6A C0T 42 C0T H8 H8 H 0 1 N N N 11.021 -7.427 11.314 5.774 4.873 -1.745 H8 C0T 43 C0T H8A H8A H 0 1 N N N 9.311 -7.813 10.926 5.770 3.960 -0.218 H8A C0T 44 C0T H8B H8B H 0 1 N N N 9.758 -6.159 11.463 6.619 3.310 -1.641 H8B C0T 45 C0T HO8 HO8 H 0 1 N N N 5.919 -4.819 9.835 -2.007 -0.396 -2.073 HO8 C0T 46 C0T HO9 HO9 H 0 1 N N N 3.015 -3.932 8.560 -4.941 1.318 -2.234 HO9 C0T 47 C0T H11 H11 H 0 1 N N N 7.957 -3.181 18.865 3.303 -0.920 4.848 H11 C0T 48 C0T H12 H12 H 0 1 N N N 8.221 -2.195 16.689 1.762 0.924 4.720 H12 C0T 49 C0T H15 H15 H 0 1 N N N 6.459 -5.715 13.258 1.215 1.799 -0.544 H15 C0T 50 C0T H16 H16 H 0 1 N N N 3.097 -6.955 16.956 0.129 -2.442 1.372 H16 C0T 51 C0T H17 H17 H 0 1 N N N 3.364 -6.827 13.923 -0.336 -0.957 -1.319 H17 C0T 52 C0T H17A H17A H 0 0 N N N 2.484 -5.525 14.768 -1.527 -1.009 0.003 H17A C0T 53 C0T H18 H18 H 0 1 N N N -3.061 -5.494 14.792 -4.614 -4.802 -1.680 H18 C0T 54 C0T H18A H18A H 0 0 N N N -2.124 -7.008 14.557 -5.081 -5.525 -0.122 H18A C0T 55 C0T H18B H18B H 0 0 N N N -2.801 -6.611 16.174 -6.176 -4.383 -0.937 H18B C0T 56 C0T H19 H19 H 0 1 N N N 5.428 -3.338 12.889 -0.862 2.273 -1.267 H19 C0T 57 C0T H20 H20 H 0 1 N N N 4.152 -5.508 11.278 -3.048 0.465 -0.137 H20 C0T 58 C0T H21 H21 H 0 1 N N N 4.358 -2.748 10.029 -3.230 2.953 -1.900 H21 C0T 59 C0T H22 H22 H 0 1 N N N 1.844 -4.094 11.055 -4.075 2.500 1.001 H22 C0T 60 C0T H23 H23 H 0 1 N N N 3.642 -1.810 12.066 -1.842 4.214 -0.181 H23 C0T 61 C0T H24 H24 H 0 1 N N N 1.997 -1.546 13.882 -2.684 3.656 2.699 H24 C0T 62 C0T H24A H24A H 0 0 N N N 1.256 -1.223 12.278 -1.276 4.623 2.198 H24A C0T 63 C0T H24B H24B H 0 0 N N N 0.949 -2.784 13.112 -2.923 5.189 1.827 H24B C0T 64 C0T H27 H27 H 0 1 N N N 1.809 -2.632 9.179 -5.182 4.152 -0.714 H27 C0T 65 C0T H28 H28 H 0 1 N N N 0.147 -1.585 9.776 -5.728 5.468 1.191 H28 C0T 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C0T C1 C6 SING N N 1 C0T N1 C2 SING N N 2 C0T N1 HN1 SING N N 3 C0T O1 C1 DOUB N N 4 C0T S1 S2 SING N N 5 C0T C2 C1 SING N N 6 C0T N2 O6 SING N N 7 C0T N2 C22 SING N N 8 C0T O2 C7 DOUB N N 9 C0T C3 C2 DOUB N N 10 C0T C3 C4 SING N N 11 C0T O3 C7 SING N N 12 C0T S3 S2 SING N N 13 C0T C4 C5 SING N N 14 C0T O4 HO4 SING N N 15 C0T C5 O4 SING N N 16 C0T C5 C9 SING N N 17 C0T O5 C15 SING N N 18 C0T C6 C5 SING N N 19 C0T C6 H6 SING N N 20 C0T C6 H6A SING N N 21 C0T C7 N1 SING N N 22 C0T C8 O3 SING N N 23 C0T C8 H8 SING N N 24 C0T C8 H8A SING N N 25 C0T C8 H8B SING N N 26 C0T O8 C20 SING N N 27 C0T O8 HO8 SING N N 28 C0T C9 C10 TRIP N N 29 C0T O9 C21 SING N N 30 C0T O9 HO9 SING N N 31 C0T C11 C10 SING N N 32 C0T C11 H11 SING N N 33 C0T C12 C11 DOUB N N 34 C0T C12 H12 SING N N 35 C0T C13 C12 SING N Z 36 C0T C14 C13 TRIP N N 37 C0T C15 C3 SING N N 38 C0T C15 C14 SING N N 39 C0T C15 H15 SING N N 40 C0T C16 C4 DOUB N N 41 C0T C16 H16 SING N N 42 C0T C17 S1 SING N E 43 C0T C17 C16 SING N N 44 C0T C17 H17 SING N N 45 C0T C17 H17A SING N N 46 C0T C18 S3 SING N N 47 C0T C18 H18 SING N N 48 C0T C18 H18A SING N N 49 C0T C18 H18B SING N N 50 C0T C19 O5 SING N N 51 C0T C19 O7 SING N N 52 C0T C19 H19 SING N N 53 C0T C20 C19 SING N N 54 C0T C20 H20 SING N N 55 C0T C21 C20 SING N N 56 C0T C21 C22 SING N N 57 C0T C21 H21 SING N N 58 C0T C22 C23 SING N N 59 C0T C22 H22 SING N N 60 C0T C23 O7 SING N N 61 C0T C23 C24 SING N N 62 C0T C23 H23 SING N N 63 C0T C24 H24 SING N N 64 C0T C24 H24A SING N N 65 C0T C24 H24B SING N N 66 C0T N2 H27 SING N N 67 C0T O6 H28 SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C0T SMILES ACDLabs 12.01 "O=C(OC)NC3=C2\C(=C/CSSSC)C(O)(C#CC=CC#CC2OC1OC(C(NO)C(O)C1O)C)CC3=O" C0T SMILES_CANONICAL CACTVS 3.370 "COC(=O)NC1=C\2[C@@H](O[C@@H]3O[C@H](C)[C@@H](NO)[C@H](O)[C@H]3O)C#C\C=C/C#C[C@](O)(CC1=O)C\2=C/CSSSC" C0T SMILES CACTVS 3.370 "COC(=O)NC1=C2[CH](O[CH]3O[CH](C)[CH](NO)[CH](O)[CH]3O)C#CC=CC#C[C](O)(CC1=O)C2=CCSSSC" C0T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O[C@H]2C#C/C=C\C#C[C@@]\3(CC(=O)C(=C2/C3=C\CSSSC)NC(=O)OC)O)O)O)NO" C0T SMILES "OpenEye OEToolkits" 1.7.0 "CC1C(C(C(C(O1)OC2C#CC=CC#CC3(CC(=O)C(=C2C3=CCSSSC)NC(=O)OC)O)O)O)NO" C0T InChI InChI 1.03 "InChI=1S/C24H28N2O9S3/c1-13-18(26-32)20(28)21(29)22(34-13)35-16-8-6-4-5-7-10-24(31)12-15(27)19(25-23(30)33-2)17(16)14(24)9-11-37-38-36-3/h4-5,9,13,16,18,20-22,26,28-29,31-32H,11-12H2,1-3H3,(H,25,30)/b5-4-,14-9+/t13-,16+,18-,20+,21-,22+,24+/m1/s1" C0T InChIKey InChI 1.03 HIXBTEQHDWBCIJ-JZCXNSNGSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C0T "SYSTEMATIC NAME" ACDLabs 12.01 "methyl {(1R,4Z,8S,13E)-8-{[4,6-dideoxy-4-(hydroxyamino)-beta-D-glucopyranosyl]oxy}-1-hydroxy-13-[2-(methyltrisulfanyl)ethylidene]-11-oxobicyclo[7.3.1]trideca-4,9-diene-2,6-diyn-10-yl}carbamate" C0T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "methyl N-[(2S,5Z,9R,13E)-2-[(2R,3R,4S,5S,6R)-3,4-dihydroxy-5-(hydroxyamino)-6-methyl-oxan-2-yl]oxy-9-hydroxy-13-(2-methylsulfanyldisulfanylethylidene)-11-oxo-12-bicyclo[7.3.1]trideca-1(12),5-dien-3,7-diynyl]carbamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C0T "Create component" 2010-10-21 RCSB C0T "Modify descriptor" 2011-06-04 RCSB C0T "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id C0T _pdbx_chem_comp_synonyms.name "methyl {(1R,4Z,8S,13E)-8-{[4,6-dideoxy-4-(hydroxyamino)-beta-D-glucopyranosyl]oxy}-1-hydroxy-13-[2-(methyltrisulfanyl)ethylidene]-11-oxobicyclo[7.3.1]trideca-4,9-diene-2,6-diyn-10-yl}carbamate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##