data_C12 # _chem_comp.id C12 _chem_comp.name "2-(1-AMINO-2-HYDROXYPROPYL)-4-(4-HYDROXYBENZYL)-1-(2-OXOETHYL)-1H-IMIDAZOL-5-OLATE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C15 H18 N3 O5" _chem_comp.mon_nstd_parent_comp_id "THR, TYR, GLY" _chem_comp.pdbx_synonyms "PEPTIDE DERIVED CHROMOPHORE" _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2006-02-23 _chem_comp.pdbx_modified_date 2024-06-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 320.321 _chem_comp.one_letter_code TYG _chem_comp.three_letter_code C12 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2FZU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C12 C1 C1 C 0 1 Y N N N Y N 0.080 4.684 3.027 1.280 -0.505 0.225 C1 C12 1 C12 N2 N2 N 0 1 Y N N N Y N -1.162 4.212 3.085 0.288 -0.859 -0.544 N2 C12 2 C12 CA2 CA2 C 0 1 Y N N N Y N -1.463 3.962 4.405 -0.417 0.229 -0.891 CA2 C12 3 C12 CG1 CG1 C 0 1 N N N N N N 0.427 5.470 -0.635 4.246 -2.921 0.333 CG1 C12 4 C12 OG1 OG1 O 0 1 N N N N N N -1.110 4.213 0.587 2.571 -2.454 -1.345 OG1 C12 5 C12 C2 C2 C 0 1 Y N N N Y N -0.391 4.277 5.210 0.162 1.306 -0.314 C2 C12 6 C12 O2 O2 O -1 1 N N N N Y N -0.090 4.264 6.428 -0.247 2.598 -0.417 O2 C12 7 C12 N3 N3 N 0 1 Y N N N Y N 0.578 4.736 4.291 1.238 0.844 0.395 N3 C12 8 C12 CA1 CA1 C 0 1 N N R N Y N 0.783 5.080 1.774 2.299 -1.436 0.830 CA1 C12 9 C12 N1 N1 N 0 1 N N N Y Y N 1.766 4.055 1.361 1.618 -2.613 1.385 N1 C12 10 C12 CB1 CB1 C 0 1 N N R N N N -0.241 5.368 0.645 3.288 -1.881 -0.250 CB1 C12 11 C12 CA3 CA3 C 0 1 N N N N Y N 1.862 5.159 4.851 2.170 1.651 1.187 CA3 C12 12 C12 C3 C3 C 0 1 N N N N Y Y 2.060 6.565 5.089 3.315 2.097 0.315 C3 C12 13 C12 O3 O3 O 0 1 N N N N Y Y 2.978 6.994 5.890 3.350 1.775 -0.849 O C12 14 C12 CB2 CB2 C 0 1 N N N N N N -2.824 3.395 4.897 -1.639 0.247 -1.772 CB2 C12 15 C12 CG2 CG2 C 0 1 Y N N N N N -3.688 2.977 3.886 -2.873 0.084 -0.922 CG2 C12 16 C12 CD1 CD1 C 0 1 Y N N N N N -4.377 3.913 3.129 -3.510 1.199 -0.409 CD1 C12 17 C12 CE1 CE1 C 0 1 Y N N N N N -5.270 3.567 2.089 -4.641 1.052 0.370 CE1 C12 18 C12 CD2 CD2 C 0 1 Y N N N N N -3.948 1.654 3.534 -3.370 -1.180 -0.662 CD2 C12 19 C12 CE2 CE2 C 0 1 Y N N N N N -4.837 1.321 2.496 -4.501 -1.332 0.116 CE2 C12 20 C12 CZ CZ C 0 1 Y N N N N N -5.506 2.264 1.764 -5.138 -0.216 0.637 CZ C12 21 C12 OH OH O 0 1 N N N N N N -6.367 1.957 0.758 -6.251 -0.363 1.404 OH C12 22 C12 HG11 HG11 H 0 0 N N N N N N 1.100 6.340 -0.630 4.950 -3.238 -0.436 HG11 C12 23 C12 HG12 HG12 H 0 0 N N N N N N 1.012 4.556 -0.817 4.793 -2.484 1.168 HG12 C12 24 C12 HG13 HG13 H 0 0 N N N N N N -0.323 5.591 -1.431 3.678 -3.783 0.683 HG13 C12 25 C12 HG1 HG1 H 0 1 N N N N N N -1.565 4.117 1.415 2.042 -3.228 -1.107 HG1 C12 26 C12 HA1 HA1 H 0 1 N N N N Y N 1.326 6.016 1.970 2.837 -0.919 1.624 HA1 C12 27 C12 H HN11 H 0 1 N N N Y Y N 2.220 4.348 0.520 1.112 -3.110 0.667 H C12 28 C12 H2 HN12 H 0 1 N Y N Y Y N 2.447 3.936 2.084 2.273 -3.222 1.853 H2 C12 29 C12 HB1 HB1 H 0 1 N N N N N N -0.805 6.283 0.877 3.856 -1.019 -0.600 HB1 C12 30 C12 HA31 HA31 H 0 0 N N N N Y N 1.986 4.643 5.814 1.650 2.525 1.580 HA31 C12 31 C12 HA32 HA32 H 0 0 N N N N Y N 2.648 4.830 4.155 2.554 1.054 2.014 HA32 C12 32 C12 HB21 HB21 H 0 0 N N N N N N -2.619 2.533 5.549 -1.689 1.196 -2.306 HB21 C12 33 C12 HB22 HB22 H 0 0 N N N N N N -3.331 4.180 5.476 -1.582 -0.571 -2.490 HB22 C12 34 C12 HD1 HD1 H 0 1 N N N N N N -4.223 4.960 3.345 -3.122 2.185 -0.617 HD1 C12 35 C12 HE1 HE1 H 0 1 N N N N N N -5.775 4.349 1.542 -5.138 1.923 0.772 HE1 C12 36 C12 HD2 HD2 H 0 1 N N N N N N -3.452 0.861 4.074 -2.873 -2.049 -1.068 HD2 C12 37 C12 HE2 HE2 H 0 1 N N N N N N -4.998 0.278 2.267 -4.889 -2.320 0.318 HE2 C12 38 C12 HOH HOH H 0 1 N N N N N N -6.418 1.013 0.661 -7.077 -0.360 0.902 HOH C12 39 C12 OXT OXT O 0 1 N Y N N Y Y ? ? ? 4.297 2.853 0.832 OXT C12 40 C12 HXT HXT H 0 1 N Y N N Y Y ? ? ? 5.010 3.115 0.233 HXT C12 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C12 C1 N2 DOUB Y N 1 C12 C1 N3 SING Y N 2 C12 C1 CA1 SING N N 3 C12 N2 CA2 SING Y N 4 C12 CA2 C2 DOUB Y N 5 C12 CA2 CB2 SING N N 6 C12 CG1 CB1 SING N N 7 C12 CG1 HG11 SING N N 8 C12 CG1 HG12 SING N N 9 C12 CG1 HG13 SING N N 10 C12 OG1 CB1 SING N N 11 C12 OG1 HG1 SING N N 12 C12 C2 O2 SING N N 13 C12 C2 N3 SING Y N 14 C12 N3 CA3 SING N N 15 C12 CA1 N1 SING N N 16 C12 CA1 CB1 SING N N 17 C12 CA1 HA1 SING N N 18 C12 N1 H SING N N 19 C12 N1 H2 SING N N 20 C12 CB1 HB1 SING N N 21 C12 CA3 C3 SING N N 22 C12 CA3 HA31 SING N N 23 C12 CA3 HA32 SING N N 24 C12 C3 O3 DOUB N N 25 C12 CB2 CG2 SING N N 26 C12 CB2 HB21 SING N N 27 C12 CB2 HB22 SING N N 28 C12 CG2 CD1 SING Y N 29 C12 CG2 CD2 DOUB Y N 30 C12 CD1 CE1 DOUB Y N 31 C12 CD1 HD1 SING N N 32 C12 CE1 CZ SING Y N 33 C12 CE1 HE1 SING N N 34 C12 CD2 CE2 SING Y N 35 C12 CD2 HD2 SING N N 36 C12 CE2 CZ DOUB Y N 37 C12 CE2 HE2 SING N N 38 C12 CZ OH SING N N 39 C12 OH HOH SING N N 40 C12 C3 OXT SING N N 41 C12 OXT HXT SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C12 SMILES ACDLabs 10.04 "[O-]c1c(nc(n1CC=O)C(N)C(O)C)Cc2ccc(O)cc2" C12 InChI InChI 1.06 "InChI=1S/C15H19N3O5/c1-8(19)13(16)14-17-11(15(23)18(14)7-12(21)22)6-9-2-4-10(20)5-3-9/h2-5,8,13,19-20,23H,6-7,16H2,1H3,(H,21,22)/p-1/t8-,13+/m1/s1" C12 InChIKey InChI 1.06 ZZDUPPDIGFNMHM-OQPBUACISA-M C12 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H](N)c1nc(Cc2ccc(O)cc2)c([O-])n1CC(O)=O" C12 SMILES CACTVS 3.385 "C[CH](O)[CH](N)c1nc(Cc2ccc(O)cc2)c([O-])n1CC(O)=O" C12 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](c1nc(c(n1CC(=O)O)[O-])Cc2ccc(cc2)O)N)O" C12 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(c1nc(c(n1CC(=O)O)[O-])Cc2ccc(cc2)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C12 "SYSTEMATIC NAME" ACDLabs 10.04 "2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzyl)-1-(2-oxoethyl)-1H-imidazol-5-olate" C12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(1~{R},2~{R})-1-azanyl-2-oxidanyl-propyl]-3-(2-hydroxy-2-oxoethyl)-5-[(4-hydroxyphenyl)methyl]imidazol-4-olate" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id C12 _pdbx_chem_comp_synonyms.name "PEPTIDE DERIVED CHROMOPHORE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C12 "Create component" 2006-02-23 RCSB C12 "Modify descriptor" 2011-06-04 RCSB C12 "Modify synonyms" 2020-06-05 PDBE C12 "Modify backbone" 2023-11-03 PDBE C12 "Other modification" 2024-06-28 PDBE #