data_C1Z # _chem_comp.id C1Z _chem_comp.name ;guanosine 3'-diphosphate 5'-triphosphate ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H18 N5 O20 P5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-11-07 _chem_comp.pdbx_modified_date 2018-01-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 683.140 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C1Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EX0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C1Z PD P1 P 0 1 N N N 94.208 18.482 60.174 -3.065 5.911 -0.777 PD C1Z 1 C1Z O1D O1 O 0 1 N N N 93.208 18.584 59.116 -3.548 6.521 0.482 O1D C1Z 2 C1Z O2D O2 O 0 1 N N N 95.171 19.536 59.863 -3.966 6.431 -2.006 O2D C1Z 3 C1Z O3D O3 O 0 1 N N N 93.500 18.958 61.372 -1.530 6.331 -1.022 O3D C1Z 4 C1Z PG P2 P 0 1 N N N 87.259 19.774 55.707 7.809 -1.558 -0.983 PG C1Z 5 C1Z O1G O4 O 0 1 N N N 87.696 19.256 54.409 8.398 -1.764 0.359 O1G C1Z 6 C1Z O2G O5 O 0 1 N N N 85.965 20.386 55.444 8.696 -0.493 -1.801 O2G C1Z 7 C1Z O3G O6 O 0 1 N N N 86.958 18.571 56.484 7.784 -2.958 -1.778 O3G C1Z 8 C1Z PB P3 P 0 1 N N N 89.748 20.215 57.041 5.622 0.134 0.084 PB C1Z 9 C1Z O1B O7 O 0 1 N N N 90.471 21.212 57.824 6.199 0.085 1.446 O1B C1Z 10 C1Z O2B O8 O 0 1 N N N 89.500 19.189 58.040 5.897 1.583 -0.563 O2B C1Z 11 C1Z O3B O9 O 0 1 N N N 88.328 20.797 56.450 6.306 -1.001 -0.830 O3B C1Z 12 C1Z O3A O10 O 0 1 N N N 90.638 19.605 55.760 4.035 -0.125 0.163 O3A C1Z 13 C1Z PA P4 P 0 1 N N N 90.729 17.950 55.502 2.858 0.424 1.115 PA C1Z 14 C1Z O1A O11 O 0 1 N N N 89.398 17.346 55.331 2.955 -0.291 2.555 O1A C1Z 15 C1Z O2A O12 O 0 1 N N N 91.356 17.547 54.235 3.000 1.888 1.280 O2A C1Z 16 C1Z "O5'" O13 O 0 1 N N N 91.540 17.338 56.844 1.431 0.094 0.447 "O5'" C1Z 17 C1Z "C5'" C1 C 0 1 N N N 90.897 16.331 57.622 0.191 0.545 0.999 "C5'" C1Z 18 C1Z "C4'" C2 C 0 1 N N R 91.822 15.162 57.706 -0.964 0.058 0.121 "C4'" C1Z 19 C1Z "O4'" O14 O 0 1 N N N 92.257 14.646 56.357 -1.114 -1.374 0.236 "O4'" C1Z 20 C1Z "C3'" C3 C 0 1 N N S 93.048 15.578 58.364 -2.304 0.637 0.626 "C3'" C1Z 21 C1Z "O3'" O15 O 0 1 N N N 92.755 15.497 59.767 -2.678 1.781 -0.145 "O3'" C1Z 22 C1Z "C2'" C4 C 0 1 N N R 94.042 14.615 57.973 -3.314 -0.513 0.414 "C2'" C1Z 23 C1Z "O2'" O16 O 0 1 N N N 93.948 13.463 58.894 -4.342 -0.114 -0.495 "O2'" C1Z 24 C1Z "C1'" C5 C 0 1 N N R 93.667 14.174 56.608 -2.464 -1.650 -0.195 "C1'" C1Z 25 C1Z N9 N1 N 0 1 Y N N 94.498 14.668 55.548 -2.908 -2.949 0.319 N9 C1Z 26 C1Z C8 C6 C 0 1 Y N N 93.960 15.176 54.572 -2.418 -3.590 1.419 C8 C1Z 27 C1Z N7 N2 N 0 1 Y N N 94.890 15.564 53.670 -3.049 -4.718 1.582 N7 C1Z 28 C1Z C5 C7 C 0 1 Y N N 96.172 15.123 54.392 -3.970 -4.857 0.600 C5 C1Z 29 C1Z C6 C8 C 0 1 N N N 97.605 15.200 54.040 -4.958 -5.884 0.257 C6 C1Z 30 C1Z O6 O17 O 0 1 N N N 97.982 15.782 52.815 -5.072 -6.892 0.938 O6 C1Z 31 C1Z N1 N3 N 0 1 N N N 98.612 14.666 54.977 -5.735 -5.693 -0.820 N1 C1Z 32 C1Z C2 C9 C 0 1 N N N 98.227 14.126 56.122 -5.624 -4.612 -1.562 C2 C1Z 33 C1Z N2 N4 N 0 1 N N N 99.228 13.597 57.055 -6.444 -4.472 -2.649 N2 C1Z 34 C1Z N3 N5 N 0 1 N N N 96.731 14.033 56.507 -4.726 -3.629 -1.290 N3 C1Z 35 C1Z C4 C10 C 0 1 Y N N 95.750 14.554 55.588 -3.887 -3.732 -0.211 C4 C1Z 36 C1Z PC P5 P 0 1 N N N 94.039 15.624 60.790 -2.887 3.242 0.499 PC C1Z 37 C1Z O1C O18 O 0 1 N N N 94.824 14.385 60.747 -1.666 3.635 1.237 O1C C1Z 38 C1Z O2C O19 O 0 1 N N N 93.582 15.689 62.170 -4.138 3.208 1.511 O2C C1Z 39 C1Z O3C O20 O 0 1 N N N 94.900 16.974 60.340 -3.173 4.308 -0.673 O3C C1Z 40 C1Z H2 H1 H 0 1 N N N 94.897 19.994 59.077 -3.948 7.390 -2.128 H2 C1Z 41 C1Z H3 H2 H 0 1 N N N 92.610 19.196 61.141 -1.146 5.966 -1.831 H3 C1Z 42 C1Z H4 H3 H 0 1 N N N 85.750 20.291 54.523 8.368 -0.309 -2.692 H4 C1Z 43 C1Z H5 H4 H 0 1 N N N 87.122 17.801 55.953 8.657 -3.353 -1.906 H5 C1Z 44 C1Z H6 H5 H 0 1 N N N 89.868 19.462 58.873 5.546 1.687 -1.458 H6 C1Z 45 C1Z H17 H6 H 0 1 N N N 89.357 16.902 54.492 2.871 -1.253 2.522 H17 C1Z 46 C1Z H7 H7 H 0 1 N N N 90.686 16.715 58.631 0.075 0.146 2.006 H7 C1Z 47 C1Z H8 H8 H 0 1 N N N 89.955 16.030 57.140 0.185 1.634 1.036 H8 C1Z 48 C1Z H9 H9 H 0 1 N N N 91.342 14.350 58.272 -0.796 0.342 -0.918 H9 C1Z 49 C1Z H10 H10 H 0 1 N N N 93.335 16.598 58.068 -2.234 0.896 1.683 H10 C1Z 50 C1Z H11 H11 H 0 1 N N N 95.053 15.048 57.983 -3.746 -0.823 1.365 H11 C1Z 51 C1Z H12 H12 H 0 1 N N N 94.292 13.708 59.745 -5.004 -0.799 -0.665 H12 C1Z 52 C1Z H13 H13 H 0 1 N N N 93.669 13.074 56.584 -2.527 -1.630 -1.283 H13 C1Z 53 C1Z H14 H14 H 0 1 N N N 92.894 15.297 54.449 -1.629 -3.220 2.056 H14 C1Z 54 C1Z H15 H15 H 0 1 N N N 100.200 13.645 56.825 -7.092 -5.163 -2.860 H15 C1Z 55 C1Z H16 H16 H 0 1 N N N 98.938 13.189 57.921 -6.377 -3.683 -3.208 H16 C1Z 56 C1Z H1 H17 H 0 1 N N N 96.451 13.621 57.374 -4.679 -2.849 -1.864 H1 C1Z 57 C1Z H18 H18 H 0 1 N N N 93.908 14.935 62.648 -4.974 2.957 1.095 H18 C1Z 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C1Z O6 C6 DOUB N N 1 C1Z N7 C5 SING Y N 2 C1Z N7 C8 DOUB Y N 3 C1Z C6 C5 SING N N 4 C1Z C6 N1 SING N N 5 C1Z O2A PA DOUB N N 6 C1Z C5 C4 DOUB Y N 7 C1Z O1G PG DOUB N N 8 C1Z C8 N9 SING Y N 9 C1Z N1 C2 DOUB N N 10 C1Z O1A PA SING N N 11 C1Z O2G PG SING N N 12 C1Z PA O3A SING N N 13 C1Z PA "O5'" SING N N 14 C1Z N9 C4 SING Y N 15 C1Z N9 "C1'" SING N N 16 C1Z C4 N3 SING N N 17 C1Z PG O3B SING N N 18 C1Z PG O3G SING N N 19 C1Z O3A PB SING N N 20 C1Z C2 N3 SING N N 21 C1Z C2 N2 SING N N 22 C1Z "O4'" "C1'" SING N N 23 C1Z "O4'" "C4'" SING N N 24 C1Z O3B PB SING N N 25 C1Z "C1'" "C2'" SING N N 26 C1Z "O5'" "C5'" SING N N 27 C1Z PB O1B DOUB N N 28 C1Z PB O2B SING N N 29 C1Z "C5'" "C4'" SING N N 30 C1Z "C4'" "C3'" SING N N 31 C1Z "C2'" "C3'" SING N N 32 C1Z "C2'" "O2'" SING N N 33 C1Z "C3'" "O3'" SING N N 34 C1Z O1D PD DOUB N N 35 C1Z "O3'" PC SING N N 36 C1Z O2D PD SING N N 37 C1Z PD O3C SING N N 38 C1Z PD O3D SING N N 39 C1Z O3C PC SING N N 40 C1Z O1C PC DOUB N N 41 C1Z PC O2C SING N N 42 C1Z O2D H2 SING N N 43 C1Z O3D H3 SING N N 44 C1Z O2G H4 SING N N 45 C1Z O3G H5 SING N N 46 C1Z O2B H6 SING N N 47 C1Z O1A H17 SING N N 48 C1Z "C5'" H7 SING N N 49 C1Z "C5'" H8 SING N N 50 C1Z "C4'" H9 SING N N 51 C1Z "C3'" H10 SING N N 52 C1Z "C2'" H11 SING N N 53 C1Z "O2'" H12 SING N N 54 C1Z "C1'" H13 SING N N 55 C1Z C8 H14 SING N N 56 C1Z N2 H15 SING N N 57 C1Z N2 H16 SING N N 58 C1Z N3 H1 SING N N 59 C1Z O2C H18 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C1Z InChI InChI 1.03 "InChI=1S/C10H18N5O20P5/c11-10-13-7-4(8(17)14-10)12-2-15(7)9-5(16)6(32-39(26,27)33-36(18,19)20)3(31-9)1-30-38(24,25)35-40(28,29)34-37(21,22)23/h2-3,5-6,9,16H,1H2,(H,24,25)(H,26,27)(H,28,29)(H2,18,19,20)(H2,21,22,23)(H3,11,13,14,17)/t3-,5-,6-,9-/m1/s1" C1Z InChIKey InChI 1.03 KCPMACXZAITQAX-UUOKFMHZSA-N C1Z SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2ncn([C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O[P](O)(=O)O[P](O)(O)=O)[C@H]3O)c2N1" C1Z SMILES CACTVS 3.385 "NC1=NC(=O)c2ncn([CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O[P](O)(=O)O[P](O)(O)=O)[CH]3O)c2N1" C1Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)O)NC(=NC2=O)N" C1Z SMILES "OpenEye OEToolkits" 2.0.6 "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)OP(=O)(O)OP(=O)(O)O)O)NC(=NC2=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C1Z "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-4-oxidanyl-2-[[oxidanyl-[oxidanyl(phosphonooxy)phosphoryl]oxy-phosphoryl]oxymethyl]oxolan-3-yl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C1Z "Create component" 2017-11-07 EBI C1Z "Other modification" 2018-01-11 EBI C1Z "Initial release" 2018-01-24 RCSB #