data_C2P # _chem_comp.id C2P _chem_comp.name "CYTIDINE-2'-MONOPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.197 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C2P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1ROB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C2P N1 N1 N 0 1 N N N 32.497 13.675 9.233 0.863 -0.557 1.099 N1 C2P 1 C2P C2 C2 C 0 1 N N N 32.080 13.948 10.484 1.138 0.700 1.491 C2 C2P 2 C2P N3 N3 N 0 1 N N N 32.974 13.708 11.446 1.256 1.008 2.781 N3 C2P 3 C2P C4 C4 C 0 1 N N N 34.169 13.148 11.305 1.106 0.078 3.716 C4 C2P 4 C2P C5 C5 C 0 1 N N N 34.527 12.796 9.996 0.823 -1.250 3.338 C5 C2P 5 C2P C6 C6 C 0 1 N N N 33.666 13.100 9.027 0.700 -1.545 2.023 C6 C2P 6 C2P O2 O2 O 0 1 N N N 30.996 14.437 10.582 1.280 1.573 0.651 O2 C2P 7 C2P N4 N4 N 0 1 N N N 35.038 12.887 12.282 1.232 0.408 5.046 N4 C2P 8 C2P "C1'" C1* C 0 1 N N R 31.466 13.838 8.272 0.738 -0.865 -0.327 "C1'" C2P 9 C2P "C2'" C2* C 0 1 N N R 31.624 15.023 7.286 -0.373 -0.005 -0.967 "C2'" C2P 10 C2P "O2'" O2* O 0 1 N N N 30.436 15.552 6.589 -1.590 -0.747 -1.073 "O2'" C2P 11 C2P "C3'" C3* C 0 1 N N R 32.596 14.363 6.221 0.177 0.333 -2.372 "C3'" C2P 12 C2P "C4'" C4* C 0 1 N N R 31.799 13.036 6.058 1.555 -0.364 -2.413 "C4'" C2P 13 C2P "O4'" O4* O 0 1 N N N 31.568 12.656 7.442 1.945 -0.493 -1.029 "O4'" C2P 14 C2P "O3'" O3* O 0 1 N N N 32.521 15.010 4.937 -0.679 -0.191 -3.387 "O3'" C2P 15 C2P "C5'" C5* C 0 1 N N N 32.354 12.168 4.929 2.567 0.494 -3.174 "C5'" C2P 16 C2P "O5'" O5* O 0 1 N N N 33.510 11.606 5.524 3.849 -0.135 -3.137 "O5'" C2P 17 C2P P P P 0 1 N N N 30.059 16.960 6.132 -2.721 0.101 -0.303 P C2P 18 C2P O1P O1P O 0 1 N N N 30.289 17.934 7.282 -2.859 1.430 -0.940 O1P C2P 19 C2P O2P O2P O 0 1 N N N 28.722 16.880 5.563 -4.126 -0.680 -0.383 O2P C2P 20 C2P O3P O3P O 0 1 N N N 31.101 17.324 5.066 -2.296 0.286 1.238 O3P C2P 21 C2P H5 H5 H 0 1 N N N 35.470 12.288 9.732 0.698 -2.018 4.087 H5 C2P 22 C2P H6 H6 H 0 1 N N N 33.939 12.859 7.985 0.479 -2.555 1.708 H6 C2P 23 C2P HN41 1HN4 H 0 0 N N N 35.956 12.456 12.173 1.431 1.322 5.302 HN41 C2P 24 C2P HN42 2HN4 H 0 0 N N N 34.536 12.322 12.968 1.118 -0.273 5.727 HN42 C2P 25 C2P "H1'" H1* H 0 1 N N N 30.518 14.013 8.832 0.528 -1.925 -0.469 "H1'" C2P 26 C2P "H2'" H2* H 0 1 N N N 31.948 15.930 7.846 -0.531 0.904 -0.389 "H2'" C2P 27 C2P "H3'" H3* H 0 1 N N N 33.670 14.351 6.517 0.292 1.411 -2.489 "H3'" C2P 28 C2P "H4'" H4* H 0 1 N N N 30.780 13.002 5.605 1.469 -1.347 -2.877 "H4'" C2P 29 C2P "HO3'" *HO3 H 0 0 N N N 33.103 14.614 4.299 -0.255 -0.003 -4.236 "HO3'" C2P 30 C2P "H5'1" 1H5* H 0 0 N N N 31.634 11.428 4.506 2.246 0.604 -4.209 "H5'1" C2P 31 C2P "H5'2" 2H5* H 0 0 N N N 32.532 12.703 3.967 2.632 1.477 -2.707 "H5'2" C2P 32 C2P "HO5'" *HO5 H 0 0 N N N 33.855 11.066 4.822 4.456 0.436 -3.626 "HO5'" C2P 33 C2P HOP2 2HOP H 0 0 N N N 28.487 17.755 5.278 -4.774 -0.139 0.088 HOP2 C2P 34 C2P HOP3 3HOP H 0 0 N N N 30.866 18.199 4.781 -2.217 -0.600 1.615 HOP3 C2P 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C2P N1 C2 SING N N 1 C2P N1 C6 SING N N 2 C2P N1 "C1'" SING N N 3 C2P C2 N3 SING N N 4 C2P C2 O2 DOUB N N 5 C2P N3 C4 DOUB N N 6 C2P C4 C5 SING N N 7 C2P C4 N4 SING N N 8 C2P C5 C6 DOUB N N 9 C2P C5 H5 SING N N 10 C2P C6 H6 SING N N 11 C2P N4 HN41 SING N N 12 C2P N4 HN42 SING N N 13 C2P "C1'" "C2'" SING N N 14 C2P "C1'" "O4'" SING N N 15 C2P "C1'" "H1'" SING N N 16 C2P "C2'" "O2'" SING N N 17 C2P "C2'" "C3'" SING N N 18 C2P "C2'" "H2'" SING N N 19 C2P "O2'" P SING N N 20 C2P "C3'" "C4'" SING N N 21 C2P "C3'" "O3'" SING N N 22 C2P "C3'" "H3'" SING N N 23 C2P "C4'" "O4'" SING N N 24 C2P "C4'" "C5'" SING N N 25 C2P "C4'" "H4'" SING N N 26 C2P "O3'" "HO3'" SING N N 27 C2P "C5'" "O5'" SING N N 28 C2P "C5'" "H5'1" SING N N 29 C2P "C5'" "H5'2" SING N N 30 C2P "O5'" "HO5'" SING N N 31 C2P P O1P DOUB N N 32 C2P P O2P SING N N 33 C2P P O3P SING N N 34 C2P O2P HOP2 SING N N 35 C2P O3P HOP3 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C2P SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2OC(C(O)C2OP(=O)(O)O)CO" C2P SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O)[C@H]2O[P](O)(O)=O" C2P SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O)[CH]2O[P](O)(O)=O" C2P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)O)OP(=O)(O)O" C2P SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)O)OP(=O)(O)O" C2P InChI InChI 1.03 "InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(20-21(16,17)18)6(14)4(3-13)19-8/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" C2P InChIKey InChI 1.03 YQUAKORMLHPSLZ-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C2P "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-cytidylic acid ; C2P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-2-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-5-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C2P "Create component" 1999-07-08 RCSB C2P "Modify descriptor" 2011-06-04 RCSB #