data_C36 # _chem_comp.id C36 _chem_comp.name "5-METHYL-5-FLUORO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H17 F N3 O8 P" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1995-06-03 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.229 _chem_comp.one_letter_code C _chem_comp.three_letter_code C36 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1MHT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C36 OXT OXT O 0 1 N N N ? ? ? 5.330 1.736 -2.346 OXT C36 1 C36 O3P O3P O 0 1 N Y N -20.110 44.702 85.359 5.098 3.064 2.503 O3P C36 2 C36 P P P 0 1 N N N -19.711 44.311 86.759 4.195 3.732 3.667 P C36 3 C36 O1P O1P O 0 1 N N N -18.248 44.205 87.064 4.518 5.161 3.989 O1P C36 4 C36 O2P O2P O 0 1 N N N -20.377 45.297 87.820 4.356 2.700 4.901 O2P C36 5 C36 "O5'" O5* O 0 1 N N N -20.475 43.006 87.157 2.675 3.470 3.172 "O5'" C36 6 C36 "C5'" C5* C 0 1 N N N -19.935 42.052 88.037 2.289 2.146 2.847 "C5'" C36 7 C36 "C4'" C4* C 0 1 N N R -20.557 40.630 87.739 0.829 2.158 2.413 "C4'" C36 8 C36 "O4'" O4* O 0 1 N N N -20.061 40.035 86.532 0.726 2.973 1.229 "O4'" C36 9 C36 "C3'" C3* C 0 1 N N S -20.063 39.603 88.759 0.313 0.779 2.029 "C3'" C36 10 C36 "O3'" O3* O 0 1 N N N -20.906 39.664 89.933 -1.102 0.756 2.204 "O3'" C36 11 C36 "C2'" C2* C 0 1 N N N -20.316 38.303 87.998 0.639 0.696 0.555 "C2'" C36 12 C36 "C1'" C1* C 0 1 N N R -20.193 38.624 86.568 0.432 2.134 0.099 "C1'" C36 13 C36 N1 N1 N 0 1 N N N -19.017 37.989 85.855 1.210 2.362 -1.122 N1 C36 14 C36 C2 C2 C 0 1 N N N -18.925 38.246 84.451 1.652 3.836 -1.469 C2 C36 15 C36 O2 O2 O 0 1 N N N -19.663 39.074 83.894 1.339 4.700 -0.663 O2 C36 16 C36 N3 N3 N 0 1 N N N -17.937 37.577 83.724 2.312 4.006 -2.655 N3 C36 17 C36 C4 C4 C 0 1 N N N -17.094 36.743 84.372 2.931 3.020 -3.240 C4 C36 18 C36 N4 N4 N 0 1 N N N -15.921 36.402 83.847 3.611 3.189 -4.421 N4 C36 19 C36 C5 C5 C 0 1 N N S -17.044 36.874 85.756 2.962 1.619 -2.643 C5 C36 20 C36 C6 C6 C 0 1 N N N -17.972 37.452 86.484 1.608 1.294 -2.040 C6 C36 21 C36 F F F 0 1 N N N -16.140 36.137 85.966 3.186 0.692 -3.626 F C36 22 C36 C C C 0 1 N N N -17.320 35.864 85.446 4.119 1.496 -1.654 C C36 23 C36 HXT HXT H 0 1 N N N -0.152 -0.593 0.725 5.117 1.762 -3.294 HXT C36 24 C36 H3P H3P H 0 1 N N N -21.037 44.769 85.165 6.073 3.157 2.547 H3P C36 25 C36 H2P H2P H 0 1 N N N -20.125 45.050 88.702 5.175 2.728 5.440 H2P C36 26 C36 "H5'1" 1H5* H 0 0 N N N -20.062 42.349 89.104 2.918 1.778 2.035 "H5'1" C36 27 C36 "H5'2" 2H5* H 0 0 N N N -18.821 42.036 88.004 2.414 1.511 3.724 "H5'2" C36 28 C36 "H4'" H4* H 0 1 N N N -21.671 40.677 87.730 0.222 2.624 3.195 "H4'" C36 29 C36 "H3'" H3* H 0 1 N N N -18.985 39.742 89.007 0.739 -0.035 2.621 "H3'" C36 30 C36 HA HA H 0 1 N N N -20.599 39.026 90.567 -1.438 0.042 1.640 HA C36 31 C36 "H2'1" 1H2* H 0 0 N N N -21.286 37.820 88.260 1.683 0.384 0.429 "H2'1" C36 32 C36 "H2'2" 2H2* H 0 0 N N N -19.653 37.467 88.321 -0.000 -0.002 0.003 "H2'2" C36 33 C36 "H1'" H1* H 0 1 N N N -21.135 38.333 86.047 -0.616 2.308 -0.169 "H1'" C36 34 C36 H4N1 1H4N H 0 0 N N N -15.491 35.762 84.515 3.560 4.073 -4.868 H4N1 C36 35 C36 H4N2 2H4N H 0 0 N N N -15.336 37.236 83.905 4.126 2.420 -4.779 H4N2 C36 36 C36 H6 H6 H 0 1 N N N -17.889 37.492 87.583 0.834 1.223 -2.812 H6 C36 37 C36 HC1 HC1 H 0 1 N N N -18.414 35.827 85.550 4.138 0.493 -1.228 HC1 C36 38 C36 HC2 HC2 H 0 1 N N N -17.885 37.483 87.580 1.629 0.347 -1.491 HC2 C36 39 C36 HC3 HC3 H 0 1 N N N -16.654 35.255 86.075 4.006 2.232 -0.858 HC3 C36 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C36 OXT C SING N N 1 C36 OXT HXT SING N N 2 C36 O3P P SING N N 3 C36 O3P H3P SING N N 4 C36 P O1P DOUB N N 5 C36 P O2P SING N N 6 C36 P "O5'" SING N N 7 C36 O2P H2P SING N N 8 C36 "O5'" "C5'" SING N N 9 C36 "C5'" "C4'" SING N N 10 C36 "C5'" "H5'1" SING N N 11 C36 "C5'" "H5'2" SING N N 12 C36 "C4'" "O4'" SING N N 13 C36 "C4'" "C3'" SING N N 14 C36 "C4'" "H4'" SING N N 15 C36 "O4'" "C1'" SING N N 16 C36 "C3'" "O3'" SING N N 17 C36 "C3'" "C2'" SING N N 18 C36 "C3'" "H3'" SING N N 19 C36 "O3'" HA SING N N 20 C36 "C2'" "C1'" SING N N 21 C36 "C2'" "H2'1" SING N N 22 C36 "C2'" "H2'2" SING N N 23 C36 "C1'" N1 SING N N 24 C36 "C1'" "H1'" SING N N 25 C36 N1 C2 SING N N 26 C36 N1 C6 SING N N 27 C36 C2 O2 DOUB N N 28 C36 C2 N3 SING N N 29 C36 N3 C4 DOUB N N 30 C36 C4 N4 SING N N 31 C36 C4 C5 SING N N 32 C36 N4 H4N1 SING N N 33 C36 N4 H4N2 SING N N 34 C36 C5 C6 SING N N 35 C36 C5 F SING N N 36 C36 C5 C SING N N 37 C36 C6 H6 SING N N 38 C36 HC1 C SING N N 39 C36 HC2 C6 SING N N 40 C36 HC3 C SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C36 SMILES ACDLabs 10.04 "O=C1N=C(N)C(F)(CN1C2OC(C(O)C2)COP(=O)(O)O)CO" C36 SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C[C@@]1(F)CO)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2" C36 SMILES CACTVS 3.341 "NC1=NC(=O)N(C[C]1(F)CO)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2" C36 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C[C@@](C(=NC2=O)N)(CO)F)COP(=O)(O)O)O" C36 SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2CC(C(=NC2=O)N)(CO)F)COP(=O)(O)O)O" C36 InChI InChI 1.03 "InChI=1S/C10H17FN3O8P/c11-10(4-15)3-14(9(17)13-8(10)12)7-1-5(16)6(22-7)2-21-23(18,19)20/h5-7,15-16H,1-4H2,(H2,12,13,17)(H2,18,19,20)/t5-,6+,7+,10+/m0/s1" C36 InChIKey InChI 1.03 LOMGOHXNFAWKHS-MPXCPUAZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C36 "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-5-fluoro-5-(hydroxymethyl)cytidine 5'-(dihydrogen phosphate) ; C36 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-[(5R)-4-amino-5-fluoro-5-(hydroxymethyl)-2-oxo-6H-pyrimidin-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C36 "Create component" 1995-06-03 RCSB C36 "Modify descriptor" 2011-06-04 RCSB #