data_C3P # _chem_comp.id C3P _chem_comp.name "CYTIDINE-3'-MONOPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.197 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C3P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1RPF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C3P P P P 0 1 N N N -13.007 47.578 6.678 -0.768 0.257 -3.573 P C3P 1 C3P O1P O1P O 0 1 N N N -12.495 47.755 8.066 0.482 0.955 -3.947 O1P C3P 2 C3P O2P O2P O 0 1 N N N -11.909 46.966 5.845 -1.367 -0.498 -4.862 O2P C3P 3 C3P O3P O3P O 0 1 N N N -14.292 46.843 6.513 -1.840 1.331 -3.034 O3P C3P 4 C3P "O5'" O5* O 0 1 N N N -14.672 52.951 6.555 3.844 -0.153 -1.137 "O5'" C3P 5 C3P "C5'" C5* C 0 1 N N N -13.624 52.123 7.034 2.552 0.298 -1.548 "C5'" C3P 6 C3P "C4'" C4* C 0 1 N N R -12.940 51.438 5.823 1.477 -0.604 -0.939 "C4'" C3P 7 C3P "O4'" O4* O 0 1 N N N -11.881 52.123 5.071 1.529 -0.544 0.502 "O4'" C3P 8 C3P "C3'" C3* C 0 1 N N S -12.385 50.076 6.114 0.068 -0.089 -1.305 "C3'" C3P 9 C3P "O3'" O3* O 0 1 N N N -13.300 49.035 6.062 -0.457 -0.817 -2.416 "O3'" C3P 10 C3P "C2'" C2* C 0 1 N N R -11.198 49.911 5.169 -0.771 -0.355 -0.034 "C2'" C3P 11 C3P "O2'" O2* O 0 1 N N N -11.347 48.779 4.286 -1.844 -1.255 -0.322 "O2'" C3P 12 C3P "C1'" C1* C 0 1 N N R -10.733 51.309 4.911 0.232 -0.997 0.948 "C1'" C3P 13 C3P N1 N1 N 0 1 N N N -9.685 51.840 5.735 -0.026 -0.536 2.315 N1 C3P 14 C3P C2 C2 C 0 1 N N N -8.441 51.398 5.523 0.014 0.779 2.596 C2 C3P 15 C3P N3 N3 N 0 1 N N N -7.435 51.961 6.211 -0.216 1.225 3.830 N3 C3P 16 C3P C4 C4 C 0 1 N N N -7.666 52.898 7.128 -0.494 0.381 4.815 C4 C3P 17 C3P C5 C5 C 0 1 N N N -8.971 53.330 7.365 -0.540 -1.003 4.554 C5 C3P 18 C3P C6 C6 C 0 1 N N N -9.942 52.824 6.643 -0.308 -1.441 3.293 C6 C3P 19 C3P O2 O2 O 0 1 N N N -8.287 50.525 4.700 0.268 1.575 1.708 O2 C3P 20 C3P N4 N4 N 0 1 N N N -6.724 53.496 7.843 -0.731 0.854 6.085 N4 C3P 21 C3P HOP2 2HOP H 0 0 N N N -12.235 46.853 4.960 -1.538 0.180 -5.529 HOP2 C3P 22 C3P HOP3 3HOP H 0 0 N N N -14.618 46.730 5.628 -2.638 0.836 -2.802 HOP3 C3P 23 C3P "HO5'" *HO5 H 0 0 N N N -15.091 53.370 7.297 4.490 0.440 -1.541 "HO5'" C3P 24 C3P "H5'1" 1H5* H 0 0 N N N -12.900 52.678 7.675 2.483 0.262 -2.635 "H5'1" C3P 25 C3P "H5'2" 2H5* H 0 0 N N N -13.974 51.389 7.797 2.401 1.323 -1.208 "H5'2" C3P 26 C3P "H4'" H4* H 0 1 N N N -13.848 51.438 5.176 1.607 -1.630 -1.281 "H4'" C3P 27 C3P "H3'" H3* H 0 1 N N N -12.068 50.013 7.181 0.097 0.977 -1.528 "H3'" C3P 28 C3P "H2'1" 1H2* H 0 0 N N N -10.216 49.465 5.453 -1.157 0.579 0.371 "H2'1" C3P 29 C3P "HO2'" *HO2 H 0 0 N N N -10.608 48.676 3.697 -2.330 -1.383 0.503 "HO2'" C3P 30 C3P "H1'" H1* H 0 1 N N N -10.271 51.297 3.896 0.171 -2.084 0.898 "H1'" C3P 31 C3P H5 H5 H 0 1 N N N -9.237 54.078 8.130 -0.765 -1.703 5.345 H5 C3P 32 C3P H6 H6 H 0 1 N N N -10.959 53.220 6.797 -0.342 -2.496 3.068 H6 C3P 33 C3P HN41 1HN4 H 0 0 N N N -6.901 54.213 8.545 -0.695 1.807 6.262 HN41 C3P 34 C3P HN42 2HN4 H 0 0 N N N -6.053 53.887 7.181 -0.938 0.235 6.802 HN42 C3P 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C3P P O1P DOUB N N 1 C3P P O2P SING N N 2 C3P P O3P SING N N 3 C3P P "O3'" SING N N 4 C3P O2P HOP2 SING N N 5 C3P O3P HOP3 SING N N 6 C3P "O5'" "C5'" SING N N 7 C3P "O5'" "HO5'" SING N N 8 C3P "C5'" "C4'" SING N N 9 C3P "C5'" "H5'1" SING N N 10 C3P "C5'" "H5'2" SING N N 11 C3P "C4'" "O4'" SING N N 12 C3P "C4'" "C3'" SING N N 13 C3P "C4'" "H4'" SING N N 14 C3P "O4'" "C1'" SING N N 15 C3P "C3'" "O3'" SING N N 16 C3P "C3'" "C2'" SING N N 17 C3P "C3'" "H3'" SING N N 18 C3P "C2'" "O2'" SING N N 19 C3P "C2'" "C1'" SING N N 20 C3P "C2'" "H2'1" SING N N 21 C3P "O2'" "HO2'" SING N N 22 C3P "C1'" N1 SING N N 23 C3P "C1'" "H1'" SING N N 24 C3P N1 C2 SING N N 25 C3P N1 C6 SING N N 26 C3P C2 N3 SING N N 27 C3P C2 O2 DOUB N N 28 C3P N3 C4 DOUB N N 29 C3P C4 C5 SING N N 30 C3P C4 N4 SING N N 31 C3P C5 C6 DOUB N N 32 C3P C5 H5 SING N N 33 C3P C6 H6 SING N N 34 C3P N4 HN41 SING N N 35 C3P N4 HN42 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C3P SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2OC(C(OP(=O)(O)O)C2O)CO" C3P SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO)[C@@H](O[P](O)(O)=O)[C@H]2O" C3P SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O[P](O)(O)=O)[CH]2O" C3P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO)OP(=O)(O)O)O" C3P SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)OP(=O)(O)O)O" C3P InChI InChI 1.03 "InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-6(14)7(4(3-13)19-8)20-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" C3P InChIKey InChI 1.03 UOOOPKANIPLQPU-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C3P "SYSTEMATIC NAME" ACDLabs 10.04 ;3'-cytidylic acid ; C3P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C3P "Create component" 1999-07-08 RCSB C3P "Modify descriptor" 2011-06-04 RCSB #