data_C43 # _chem_comp.id C43 _chem_comp.name "2'-O-METHYOXYETHYL-CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H20 N3 O9 P" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-05-12 _chem_comp.pdbx_modified_date 2013-02-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 381.276 _chem_comp.one_letter_code C _chem_comp.three_letter_code C43 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 468D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C43 P P P 0 1 N N N 16.306 4.002 21.558 4.988 -0.040 -0.112 P C43 1 C43 OP3 OP3 O 0 1 N Y N 17.387 3.751 22.562 5.756 -1.439 -0.320 OP3 C43 2 C43 OP2 OP2 O 0 1 N N N 15.631 5.390 21.980 5.826 0.887 0.904 OP2 C43 3 C43 OP1 OP1 O 0 1 N N N 16.633 3.936 20.106 4.858 0.650 -1.415 OP1 C43 4 C43 "O5'" "O5'" O 0 1 N N N 15.154 2.941 21.811 3.524 -0.317 0.497 "O5'" C43 5 C43 "C5'" "C5'" C 0 1 N N N 14.677 2.670 23.122 2.505 -1.021 -0.215 "C5'" C43 6 C43 "C4'" "C4'" C 0 1 N N R 13.606 1.628 23.050 1.245 -1.107 0.649 "C4'" C43 7 C43 "O4'" "O4'" O 0 1 N N N 12.390 2.215 22.505 0.691 0.207 0.837 "O4'" C43 8 C43 "C3'" "C3'" C 0 1 N N R 13.893 0.488 22.092 0.176 -1.956 -0.066 "C3'" C43 9 C43 "O3'" "O3'" O 0 1 N N N 14.754 -0.510 22.580 -0.171 -3.093 0.727 "O3'" C43 10 C43 "C2'" "C2'" C 0 1 N N R 12.498 -0.044 21.806 -1.036 -1.003 -0.206 "C2'" C43 11 C43 "O2'" "O2'" O 0 1 N N N 12.038 -0.850 22.871 -2.259 -1.690 0.062 "O2'" C43 12 C43 "C1'" "C1'" C 0 1 N N R 11.705 1.252 21.718 -0.744 0.056 0.888 "C1'" C43 13 C43 N1 N1 N 0 1 N N N 11.698 1.706 20.319 -1.408 1.322 0.570 N1 C43 14 C43 C2 C2 C 0 1 N N N 10.742 1.168 19.438 -1.101 1.972 -0.568 C2 C43 15 C43 O2 O2 O 0 1 N N N 9.894 0.361 19.875 -0.270 1.497 -1.324 O2 C43 16 C43 N3 N3 N 0 1 N N N 10.764 1.544 18.133 -1.689 3.125 -0.882 N3 C43 17 C43 C4 C4 C 0 1 N N N 11.672 2.427 17.706 -2.596 3.664 -0.077 C4 C43 18 C43 N4 N4 N 0 1 N N N 11.660 2.772 16.411 -3.197 4.855 -0.412 N4 C43 19 C43 C5 C5 C 0 1 N N N 12.641 2.998 18.589 -2.940 3.009 1.123 C5 C43 20 C43 C6 C6 C 0 1 N N N 12.615 2.611 19.870 -2.337 1.834 1.426 C6 C43 21 C43 "CA'" "CA'" C 0 1 N N N 10.700 -1.318 22.865 -2.875 -2.256 -1.097 "CA'" C43 22 C43 "CB'" "CB'" C 0 1 N N N 10.667 -2.495 23.787 -4.170 -2.963 -0.692 "CB'" C43 23 C43 "CD'" "CD'" C 0 1 N N N 9.197 -3.842 22.373 -6.354 -2.560 0.208 "CD'" C43 24 C43 "OC'" "OC'" O 0 1 N N N 9.392 -3.205 23.681 -5.104 -2.001 -0.199 "OC'" C43 25 C43 HOP3 HOP3 H 0 0 N N N 18.203 3.568 22.111 5.877 -1.946 0.495 HOP3 C43 26 C43 HOP2 HOP2 H 0 0 N N N 15.551 5.949 21.216 6.720 1.094 0.601 HOP2 C43 27 C43 "H5'1" "H5'1" H 0 0 N N N 15.505 2.304 23.746 2.276 -0.492 -1.140 "H5'1" C43 28 C43 "H5'2" "H5'2" H 0 0 N N N 14.266 3.591 23.561 2.854 -2.027 -0.449 "H5'2" C43 29 C43 "H4'" "H4'" H 0 1 N N N 13.416 1.222 24.055 1.487 -1.548 1.615 "H4'" C43 30 C43 "H3'" "H3'" H 0 1 N N N 14.300 0.911 21.161 0.532 -2.270 -1.047 "H3'" C43 31 C43 HA HA H 0 1 N N N 14.874 -1.178 21.915 0.567 -3.695 0.895 HA C43 32 C43 "H2'" "H2'" H 0 1 N N N 12.477 -0.575 20.843 -1.058 -0.545 -1.195 "H2'" C43 33 C43 "H1'" "H1'" H 0 1 N N N 10.679 1.091 22.080 -1.057 -0.308 1.867 "H1'" C43 34 C43 H4N1 H4N1 H 0 0 N N N 10.984 2.371 15.793 -2.959 5.303 -1.238 H4N1 C43 35 C43 H4N2 H4N2 H 0 0 N N N 12.327 3.430 16.063 -3.859 5.246 0.179 H4N2 C43 36 C43 H5 H5 H 0 1 N N N 13.367 3.715 18.235 -3.675 3.434 1.789 H5 C43 37 C43 H6 H6 H 0 1 N N N 13.334 3.023 20.562 -2.587 1.311 2.336 H6 C43 38 C43 "HA'1" "HA'1" H 0 0 N N N 10.019 -0.532 23.225 -3.101 -1.464 -1.811 "HA'1" C43 39 C43 "HA'2" "HA'2" H 0 0 N N N 10.406 -1.621 21.849 -2.195 -2.975 -1.554 "HA'2" C43 40 C43 "HB'1" "HB'1" H 0 0 N N N 11.485 -3.182 23.524 -4.593 -3.470 -1.560 "HB'1" C43 41 C43 "HB'2" "HB'2" H 0 0 N N N 10.800 -2.146 24.822 -3.956 -3.695 0.087 "HB'2" C43 42 C43 "HD'1" "HD'1" H 0 0 N N N 8.225 -4.357 22.357 -6.823 -3.059 -0.641 "HD'1" C43 43 C43 "HD'2" "HD'2" H 0 0 N N N 9.219 -3.075 21.585 -6.186 -3.284 1.006 "HD'2" C43 44 C43 "HD'3" "HD'3" H 0 0 N N N 10.001 -4.572 22.197 -7.008 -1.766 0.569 "HD'3" C43 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C43 P OP3 SING N N 1 C43 P OP2 SING N N 2 C43 P OP1 DOUB N N 3 C43 P "O5'" SING N N 4 C43 OP3 HOP3 SING N N 5 C43 OP2 HOP2 SING N N 6 C43 "O5'" "C5'" SING N N 7 C43 "C5'" "C4'" SING N N 8 C43 "C5'" "H5'1" SING N N 9 C43 "C5'" "H5'2" SING N N 10 C43 "C4'" "O4'" SING N N 11 C43 "C4'" "C3'" SING N N 12 C43 "C4'" "H4'" SING N N 13 C43 "O4'" "C1'" SING N N 14 C43 "C3'" "O3'" SING N N 15 C43 "C3'" "C2'" SING N N 16 C43 "C3'" "H3'" SING N N 17 C43 "O3'" HA SING N N 18 C43 "C2'" "O2'" SING N N 19 C43 "C2'" "C1'" SING N N 20 C43 "C2'" "H2'" SING N N 21 C43 "O2'" "CA'" SING N N 22 C43 "C1'" N1 SING N N 23 C43 "C1'" "H1'" SING N N 24 C43 N1 C2 SING N N 25 C43 N1 C6 SING N N 26 C43 C2 O2 DOUB N N 27 C43 C2 N3 SING N N 28 C43 N3 C4 DOUB N N 29 C43 C4 N4 SING N N 30 C43 C4 C5 SING N N 31 C43 N4 H4N1 SING N N 32 C43 N4 H4N2 SING N N 33 C43 C5 C6 DOUB N N 34 C43 C5 H5 SING N N 35 C43 C6 H6 SING N N 36 C43 "CA'" "CB'" SING N N 37 C43 "CA'" "HA'1" SING N N 38 C43 "CA'" "HA'2" SING N N 39 C43 "CB'" "OC'" SING N N 40 C43 "CB'" "HB'1" SING N N 41 C43 "CB'" "HB'2" SING N N 42 C43 "CD'" "OC'" SING N N 43 C43 "CD'" "HD'1" SING N N 44 C43 "CD'" "HD'2" SING N N 45 C43 "CD'" "HD'3" SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C43 SMILES ACDLabs 12.01 "O=P(O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(OCCOC)C2O" C43 InChI InChI 1.03 "InChI=1S/C12H20N3O9P/c1-21-4-5-22-10-9(16)7(6-23-25(18,19)20)24-11(10)15-3-2-8(13)14-12(15)17/h2-3,7,9-11,16H,4-6H2,1H3,(H2,13,14,17)(H2,18,19,20)/t7-,9-,10-,11-/m1/s1" C43 InChIKey InChI 1.03 XQYCHAUACFLMBW-QCNRFFRDSA-N C43 SMILES_CANONICAL CACTVS 3.370 "COCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=NC2=O)N" C43 SMILES CACTVS 3.370 "COCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=NC2=O)N" C43 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COCCO[C@@H]1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)COP(=O)(O)O)O" C43 SMILES "OpenEye OEToolkits" 1.7.6 "COCCOC1C(C(OC1N2C=CC(=NC2=O)N)COP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C43 "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-O-(2-methoxyethyl)cytidine 5'-(dihydrogen phosphate) ; C43 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-4-(2-methoxyethoxy)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C43 "Create component" 1999-05-12 RCSB C43 "Modify descriptor" 2011-06-04 RCSB C43 "Modify atom id" 2013-02-19 RCSB #