data_C49 # _chem_comp.id C49 _chem_comp.name "4-THIO,5-FLUORO,5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H15 F N3 O7 P S" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1995-09-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 371.279 _chem_comp.one_letter_code C _chem_comp.three_letter_code C49 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DCT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C49 P P P 0 1 N N N 19.373 42.736 44.110 5.656 -0.776 -3.409 P C49 1 C49 O1P O1P O 0 1 N N N 18.891 43.136 45.438 6.050 -0.019 -4.643 O1P C49 2 C49 O2P O2P O 0 1 N N N 20.769 42.323 43.902 5.605 -2.384 -3.571 O2P C49 3 C49 O3P O3P O 0 1 N Y N 18.543 41.521 43.526 6.629 -0.562 -2.135 O3P C49 4 C49 "O5'" O5* O 0 1 N N N 18.964 43.938 43.121 4.196 -0.404 -2.816 "O5'" C49 5 C49 "C5'" C5* C 0 1 N N N 18.824 43.789 41.693 3.748 -1.075 -1.652 "C5'" C49 6 C49 "C4'" C4* C 0 1 N N R 18.022 44.980 41.215 2.366 -0.558 -1.295 "C4'" C49 7 C49 "O4'" O4* O 0 1 N N N 18.265 46.079 42.063 1.450 -0.840 -2.366 "O4'" C49 8 C49 "C3'" C3* C 0 1 N N S 18.147 45.216 39.735 1.775 -1.219 -0.060 "C3'" C49 9 C49 "O3'" O3* O 0 1 N N N 17.192 44.468 39.072 2.223 -0.596 1.125 "O3'" C49 10 C49 "C2'" C2* C 0 1 N N N 17.807 46.680 39.762 0.297 -1.015 -0.295 "C2'" C49 11 C49 "C1'" C1* C 0 1 N N R 18.512 47.076 41.012 0.190 -1.227 -1.794 "C1'" C49 12 C49 N1 N1 N 0 1 N N N 19.407 48.224 41.069 -0.863 -0.460 -2.394 N1 C49 13 C49 C2 C2 C 0 1 N N N 19.595 48.975 42.204 -0.516 0.845 -2.823 C2 C49 14 C49 O2 O2 O 0 1 N N N 18.934 48.844 43.236 0.577 1.380 -2.618 O2 C49 15 C49 N3 N3 N 0 1 N N N 20.579 49.913 42.151 -1.491 1.507 -3.564 N3 C49 16 C49 C4 C4 C 0 1 N N N 21.155 50.405 41.040 -2.790 1.111 -3.740 C4 C49 17 C49 N4 N4 N 0 1 N N N 21.980 51.441 41.051 -3.574 1.759 -4.536 N4 C49 18 C49 C5 C5 C 0 1 N N R 20.835 49.781 39.761 -3.254 -0.055 -2.914 C5 C49 19 C49 C6 C6 C 0 1 N N N 20.163 48.530 39.860 -2.137 -1.040 -2.572 C6 C49 20 C49 CM5 CM5 C 0 1 N N N 20.198 50.693 38.862 -3.833 0.509 -1.609 CM5 C49 21 C49 F F F 0 1 N N N 21.975 49.486 39.146 -4.283 -0.679 -3.566 F C49 22 C49 SG SG S 0 1 N N N 21.242 47.221 39.316 -2.519 -2.674 -2.366 SG C49 23 C49 H2P H2P H 0 1 N N N 21.080 42.064 43.042 6.366 -2.844 -3.985 H2P C49 24 C49 H3P H3P H 0 1 N N N 18.854 41.262 42.666 7.599 -0.638 -2.261 H3P C49 25 C49 "H5'1" 1H5* H 0 0 N N N 18.383 42.810 41.392 3.707 -2.147 -1.848 "H5'1" C49 26 C49 "H5'2" 2H5* H 0 0 N N N 19.798 43.671 41.163 4.443 -0.878 -0.834 "H5'2" C49 27 C49 "H4'" H4* H 0 1 N N N 16.954 44.706 41.383 2.419 0.530 -1.173 "H4'" C49 28 C49 "H3'" H3* H 0 1 N N N 19.178 45.024 39.357 2.013 -2.288 -0.021 "H3'" C49 29 C49 HA HA H 0 1 N N N 17.271 44.617 38.137 1.969 -1.180 1.857 HA C49 30 C49 "H2'1" 1H2* H 0 0 N N N 16.722 46.931 39.713 -0.329 -1.705 0.279 "H2'1" C49 31 C49 "H2'2" 2H2* H 0 0 N N N 18.071 47.260 38.847 -0.001 0.001 -0.003 "H2'2" C49 32 C49 "H1'" H1* H 0 1 N N N 17.645 47.693 41.346 0.020 -2.280 -2.039 "H1'" C49 33 C49 H3 H3 H 0 1 N N N 20.913 50.279 43.042 -1.209 2.372 -4.017 H3 C49 34 C49 HM51 1HM5 H 0 0 N N N 20.724 51.673 38.785 -4.911 0.331 -1.559 HM51 C49 35 C49 HM52 2HM5 H 0 0 N N N 19.127 50.839 39.137 -3.364 0.034 -0.743 HM52 C49 36 C49 HM53 3HM5 H 0 0 N N N 20.068 50.232 37.855 -3.659 1.588 -1.547 HM53 C49 37 C49 HN1 HN1 H 0 1 N N N 22.303 51.655 40.129 -4.512 1.348 -4.494 HN1 C49 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C49 P O1P DOUB N N 1 C49 P O2P SING N N 2 C49 P O3P SING N N 3 C49 P "O5'" SING N N 4 C49 O2P H2P SING N N 5 C49 O3P H3P SING N N 6 C49 "O5'" "C5'" SING N N 7 C49 "C5'" "C4'" SING N N 8 C49 "C5'" "H5'1" SING N N 9 C49 "C5'" "H5'2" SING N N 10 C49 "C4'" "O4'" SING N N 11 C49 "C4'" "C3'" SING N N 12 C49 "C4'" "H4'" SING N N 13 C49 "O4'" "C1'" SING N N 14 C49 "C3'" "O3'" SING N N 15 C49 "C3'" "C2'" SING N N 16 C49 "C3'" "H3'" SING N N 17 C49 "O3'" HA SING N N 18 C49 "C2'" "C1'" SING N N 19 C49 "C2'" "H2'1" SING N N 20 C49 "C2'" "H2'2" SING N N 21 C49 "C1'" N1 SING N N 22 C49 "C1'" "H1'" SING N N 23 C49 N1 C2 SING N N 24 C49 N1 C6 SING N N 25 C49 C2 O2 DOUB N N 26 C49 C2 N3 SING N N 27 C49 N3 C4 SING N N 28 C49 N3 H3 SING N N 29 C49 C4 N4 DOUB N N 30 C49 C4 C5 SING N N 31 C49 C5 C6 SING N N 32 C49 C5 CM5 SING N N 33 C49 C5 F SING N N 34 C49 C6 SG DOUB N N 35 C49 CM5 HM51 SING N N 36 C49 CM5 HM52 SING N N 37 C49 CM5 HM53 SING N N 38 C49 HN1 N4 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C49 SMILES ACDLabs 10.04 "O=C1N(C(=S)C(F)(C(=[N@H])N1)C)C2OC(C(O)C2)COP(=O)(O)O" C49 SMILES_CANONICAL CACTVS 3.341 "C[C@@]1(F)C(=N)NC(=O)N([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C1=S" C49 SMILES CACTVS 3.341 "C[C]1(F)C(=N)NC(=O)N([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C1=S" C49 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C/1\[C@@](C(=S)N(C(=O)N1)C2C[C@@H]([C@H](O2)COP(=O)(O)O)O)(C)F" C49 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C1C(C(=S)N(C(=O)N1)C2CC(C(O2)COP(=O)(O)O)O)(C)F" C49 InChI InChI 1.03 "InChI=1S/C10H15FN3O7PS/c1-10(11)7(12)13-9(16)14(8(10)23)6-2-4(15)5(21-6)3-20-22(17,18)19/h4-6,15H,2-3H2,1H3,(H2,12,13,16)(H2,17,18,19)/t4-,5+,6+,10+/m0/s1" C49 InChIKey InChI 1.03 YTBJQSMBUHMWBV-AVAJSQPUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C49 "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-5-fluoro-5-methyl-6-thioxocytidine 5'-(dihydrogen phosphate) ; C49 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S)-5-[(5R)-5-fluoro-4-imino-5-methyl-2-oxo-6-sulfanylidene-1,3-diazinan-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C49 "Create component" 1995-09-15 RCSB C49 "Modify descriptor" 2011-06-04 RCSB #