data_C4W # _chem_comp.id C4W _chem_comp.name 1-azido-beta-N-acetyl-D-glucosamine _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C8 H14 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-11-13 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C4W _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EKF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C4W C2 C2 C 0 1 N N R 27.996 -13.642 -23.107 0.478 0.689 -0.170 C2 C4W 1 C4W C3 C3 C 0 1 N N R 26.726 -14.281 -23.700 -0.614 1.599 0.401 C3 C4W 2 C4W C4 C4 C 0 1 N N S 26.539 -15.761 -23.246 -1.972 1.162 -0.157 C4 C4W 3 C4W C5 C5 C 0 1 N N R 26.839 -15.961 -21.735 -2.206 -0.312 0.184 C5 C4W 4 C4W C6 C6 C 0 1 N N N 26.815 -17.422 -21.304 -3.533 -0.771 -0.422 C6 C4W 5 C4W C7 C7 C 0 1 N N N 28.996 -11.566 -24.223 2.911 0.771 -0.251 C7 C4W 6 C4W C8 C8 C 0 1 N N N 28.925 -10.073 -24.448 4.243 1.142 0.349 C8 C4W 7 C4W N2 N2 N 0 1 N N N 28.112 -12.227 -23.442 1.772 1.049 0.413 N2 C4W 8 C4W O3 O3 O 0 1 N N N 26.711 -14.143 -25.145 -0.354 2.952 0.024 O3 C4W 9 C4W O4 O4 O 0 1 N N N 25.164 -16.120 -23.455 -3.006 1.958 0.425 O4 C4W 10 C4W O5 O5 O 0 1 N N N 28.105 -15.370 -21.394 -1.139 -1.098 -0.350 O5 C4W 11 C4W O6 O6 O 0 1 N N N 27.954 -18.064 -21.880 -3.808 -2.111 -0.007 O6 C4W 12 C4W C1 C1 C 0 1 N N R 28.124 -13.934 -21.603 0.149 -0.767 0.172 C1 C4W 13 C4W O7 O7 O 0 1 N N N 29.888 -12.225 -24.766 2.865 0.224 -1.333 O7 C4W 14 C4W N1 N1 N 0 1 N N N 29.365 -13.336 -21.026 1.158 -1.648 -0.421 N1 C4W 15 C4W N3 N3 N 1 1 N N N 29.448 -13.518 -19.781 1.780 -2.313 0.237 N3 C4W 16 C4W N4 N4 N -1 1 N N N 29.550 -13.691 -18.490 2.402 -2.978 0.896 N4 C4W 17 C4W H2 H2 H 0 1 N N N 28.843 -14.153 -23.587 0.521 0.808 -1.253 H2 C4W 18 C4W H3 H3 H 0 1 N N N 25.870 -13.719 -23.299 -0.624 1.517 1.488 H3 C4W 19 C4W H4 H4 H 0 1 N N N 27.206 -16.406 -23.836 -1.978 1.291 -1.240 H4 C4W 20 C4W H5 H5 H 0 1 N N N 26.048 -15.439 -21.176 -2.239 -0.433 1.267 H5 C4W 21 C4W H61 H61 H 0 1 N N N 25.893 -17.903 -21.662 -4.334 -0.115 -0.084 H61 C4W 22 C4W H62 H62 H 0 1 N N N 26.862 -17.490 -20.207 -3.467 -0.735 -1.510 H62 C4W 23 C4W H81 H81 H 0 1 N N N 29.742 -9.763 -25.116 4.365 0.632 1.305 H81 C4W 24 C4W H82 H82 H 0 1 N N N 27.959 -9.817 -24.908 5.043 0.841 -0.328 H82 C4W 25 C4W H83 H83 H 0 1 N N N 29.022 -9.552 -23.484 4.285 2.220 0.504 H83 C4W 26 C4W HN2 HN2 H 0 1 N N N 27.417 -11.644 -23.021 1.809 1.487 1.278 HN2 C4W 27 C4W HO3 HO3 H 0 1 N Y N 26.828 -13.229 -25.378 -1.011 3.584 0.347 HO3 C4W 28 C4W HO4 HO4 H 0 1 N Y N 25.027 -17.020 -23.184 -3.895 1.735 0.116 HO4 C4W 29 C4W HO6 HO6 H 0 1 N Y N 27.964 -18.980 -21.627 -4.636 -2.468 -0.355 HO6 C4W 30 C4W H1 H1 H 0 1 N N N 27.255 -13.487 -21.097 0.146 -0.894 1.254 H1 C4W 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C4W O3 C3 SING N N 1 C4W O7 C7 DOUB N N 2 C4W C8 C7 SING N N 3 C4W C7 N2 SING N N 4 C4W C3 C4 SING N N 5 C4W C3 C2 SING N N 6 C4W O4 C4 SING N N 7 C4W N2 C2 SING N N 8 C4W C4 C5 SING N N 9 C4W C2 C1 SING N N 10 C4W O6 C6 SING N N 11 C4W C5 O5 SING N N 12 C4W C5 C6 SING N N 13 C4W C1 O5 SING N N 14 C4W C1 N1 SING N N 15 C4W N1 N3 DOUB N N 16 C4W N3 N4 DOUB N N 17 C4W C2 H2 SING N N 18 C4W C3 H3 SING N N 19 C4W C4 H4 SING N N 20 C4W C5 H5 SING N N 21 C4W C6 H61 SING N N 22 C4W C6 H62 SING N N 23 C4W C8 H81 SING N N 24 C4W C8 H82 SING N N 25 C4W C8 H83 SING N N 26 C4W N2 HN2 SING N N 27 C4W O3 HO3 SING N N 28 C4W O4 HO4 SING N N 29 C4W O6 HO6 SING N N 30 C4W C1 H1 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C4W InChI InChI 1.03 "InChI=1S/C8H14N4O5/c1-3(14)10-5-7(16)6(15)4(2-13)17-8(5)11-12-9/h4-8,13,15-16H,2H2,1H3,(H,10,14)/t4-,5-,6-,7-,8-/m1/s1" C4W InChIKey InChI 1.03 CCZCDCDASZJFGK-FMDGEEDCSA-N C4W SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@H](O)[C@@H](CO)O[C@H]1N=[N+]=[N-]" C4W SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)O[CH]1N=[N+]=[N-]" C4W SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1N=[N+]=[N-])CO)O)O" C4W SMILES "OpenEye OEToolkits" 2.0.6 "CC(=O)NC1C(C(C(OC1N=[N+]=[N-])CO)O)O" # _pdbx_chem_comp_identifier.comp_id C4W _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-2-azido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-3-yl]ethanamide" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support C4W "CARBOHYDRATE ISOMER" D PDB ? C4W "CARBOHYDRATE RING" pyranose PDB ? C4W "CARBOHYDRATE ANOMER" beta PDB ? C4W "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C4W "Create component" 2017-11-13 EBI C4W "Modify name" 2018-01-02 EBI C4W "Initial release" 2018-07-11 RCSB C4W "Other modification" 2020-07-03 RCSB C4W "Modify internal type" 2020-07-17 RCSB C4W "Modify linking type" 2020-07-17 RCSB C4W "Modify leaving atom flag" 2020-07-17 RCSB ##