data_C56 # _chem_comp.id C56 _chem_comp.name "4-(DIMETHYLAMINO)-N-{[(2R)-1-ETHYLPYRROLIDIN-2-YL]METHYL}-2-METHOXY-5-NITROBENZAMIDE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H26 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-09-22 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.413 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C56 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4A23 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C56 O16 O16 O 0 1 N N N 29.999 21.331 10.581 -0.917 -2.224 -0.046 O16 C56 1 C56 C15 C15 C 0 1 N N N 30.760 22.271 10.770 -0.599 -1.054 0.049 C15 C56 2 C56 C2 C2 C 0 1 Y N N 31.894 22.474 9.784 0.824 -0.674 0.030 C2 C56 3 C56 C3 C3 C 0 1 Y N N 32.943 23.390 9.928 1.814 -1.661 -0.098 C3 C56 4 C56 O13 O13 O 0 1 N N N 33.066 24.228 11.008 1.466 -2.967 -0.205 O13 C56 5 C56 C14 C14 C 0 1 N N N 34.336 24.849 11.209 2.529 -3.914 -0.332 C14 C56 6 C56 C4 C4 C 0 1 Y N N 33.935 23.499 8.960 3.148 -1.293 -0.115 C4 C56 7 C56 C5 C5 C 0 1 Y N N 33.918 22.694 7.840 3.499 0.047 -0.005 C5 C56 8 C56 N10 N10 N 0 1 N N N 34.947 22.882 6.895 4.839 0.416 -0.022 N10 C56 9 C56 C12 C12 C 0 1 N N N 34.927 22.311 5.560 5.572 -0.211 1.087 C12 C56 10 C56 C11 C11 C 0 1 N N N 36.144 23.668 7.172 5.459 0.090 -1.313 C11 C56 11 C56 C6 C6 C 0 1 Y N N 32.867 21.790 7.696 2.512 1.022 0.121 C6 C56 12 C56 N7 N7 N 1 1 N N N 32.739 20.933 6.610 2.895 2.447 0.237 N7 C56 13 C56 O9 O9 O -1 1 N N N 31.984 21.219 5.698 2.035 3.302 0.347 O9 C56 14 C56 O8 O8 O 0 1 N N N 33.454 19.746 6.666 4.071 2.765 0.221 O8 C56 15 C56 C1 C1 C 0 1 Y N N 31.876 21.681 8.654 1.192 0.671 0.134 C1 C56 16 C56 N17 N17 N 0 1 N N N 30.564 23.084 11.815 -1.548 -0.104 0.167 N17 C56 17 C56 C18 C18 C 0 1 N N N 29.463 22.865 12.747 -2.964 -0.481 0.180 C18 C56 18 C56 C05 C05 C 0 1 N N R 29.790 22.219 14.178 -3.819 0.759 0.444 C05 C56 19 C56 C06 C06 C 0 1 N N N 28.494 22.265 15.059 -3.646 1.772 -0.707 C06 C56 20 C56 C07 C07 C 0 1 N N N 27.972 20.837 15.245 -5.076 2.346 -0.886 C07 C56 21 C56 C08 C08 C 0 1 N N N 29.051 19.922 14.653 -5.951 1.100 -0.598 C08 C56 22 C56 N09 N09 N 0 1 N N N 30.162 20.757 14.074 -5.245 0.385 0.486 N09 C56 23 C56 C10 C10 C 0 1 N N N 30.698 20.105 12.834 -5.412 -1.068 0.354 C10 C56 24 C56 C13 C13 C 0 1 N N N 29.928 18.859 12.392 -6.888 -1.430 0.532 C13 C56 25 C56 H17 H17 H 0 1 N N N 31.183 23.856 11.960 -1.294 0.829 0.243 H17 C56 26 C56 H1 H1 H 0 1 N N N 31.078 20.967 8.517 0.433 1.433 0.228 H1 C56 27 C56 H4 H4 H 0 1 N N N 34.727 24.222 9.086 3.916 -2.047 -0.212 H4 C56 28 C56 H141 H141 H 0 0 N N N 34.294 25.489 12.103 3.175 -3.854 0.544 H141 C56 29 C56 H142 H142 H 0 0 N N N 35.105 24.075 11.348 2.113 -4.919 -0.408 H142 C56 30 C56 H143 H143 H 0 0 N N N 34.588 25.462 10.331 3.108 -3.691 -1.227 H143 C56 31 C56 H121 H121 H 0 0 N N N 35.840 22.604 5.022 5.507 -1.295 0.998 H121 C56 32 C56 H122 H122 H 0 0 N N N 34.879 21.214 5.631 6.618 0.095 1.050 H122 C56 33 C56 H123 H123 H 0 0 N N N 34.046 22.682 5.016 5.135 0.103 2.034 H123 C56 34 C56 H111 H111 H 0 0 N N N 36.796 23.669 6.286 4.940 0.623 -2.110 H111 C56 35 C56 H112 H112 H 0 0 N N N 35.856 24.701 7.416 6.507 0.389 -1.299 H112 C56 36 C56 H113 H113 H 0 0 N N N 36.683 23.227 8.023 5.390 -0.983 -1.489 H113 C56 37 C56 H181 H181 H 0 0 N N N 28.994 23.843 12.931 -3.234 -0.910 -0.785 H181 C56 38 C56 H182 H182 H 0 0 N N N 28.742 22.201 12.248 -3.136 -1.217 0.965 H182 C56 39 C56 H05 H05 H 0 1 N N N 30.594 22.791 14.664 -3.528 1.218 1.389 H05 C56 40 C56 H061 H061 H 0 0 N N N 28.729 22.703 16.040 -2.947 2.560 -0.426 H061 C56 41 C56 H062 H062 H 0 0 N N N 27.728 22.876 14.559 -3.316 1.269 -1.616 H062 C56 42 C56 H071 H071 H 0 0 N N N 27.826 20.618 16.313 -5.273 3.137 -0.163 H071 C56 43 C56 H072 H072 H 0 0 N N N 27.020 20.704 14.710 -5.229 2.703 -1.904 H072 C56 44 C56 H081 H081 H 0 0 N N N 29.455 19.274 15.444 -6.945 1.403 -0.268 H081 C56 45 C56 H082 H082 H 0 0 N N N 28.609 19.301 13.860 -6.020 0.471 -1.485 H082 C56 46 C56 H101 H101 H 0 0 N N N 30.662 20.840 12.016 -5.077 -1.385 -0.633 H101 C56 47 C56 H102 H102 H 0 0 N N N 31.743 19.815 13.022 -4.820 -1.573 1.118 H102 C56 48 C56 H131 H131 H 0 0 N N N 30.387 18.448 11.481 -7.480 -0.925 -0.232 H131 C56 49 C56 H132 H132 H 0 0 N N N 29.962 18.104 13.192 -7.012 -2.509 0.434 H132 C56 50 C56 H133 H133 H 0 0 N N N 28.882 19.129 12.186 -7.224 -1.114 1.520 H133 C56 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C56 O16 C15 DOUB N N 1 C56 C15 C2 SING N N 2 C56 C15 N17 SING N N 3 C56 C2 C3 SING Y N 4 C56 C2 C1 DOUB Y N 5 C56 C3 O13 SING N N 6 C56 C3 C4 DOUB Y N 7 C56 O13 C14 SING N N 8 C56 C4 C5 SING Y N 9 C56 C5 N10 SING N N 10 C56 C5 C6 DOUB Y N 11 C56 N10 C12 SING N N 12 C56 N10 C11 SING N N 13 C56 C6 N7 SING N N 14 C56 C6 C1 SING Y N 15 C56 N7 O9 SING N N 16 C56 N7 O8 DOUB N N 17 C56 N17 C18 SING N N 18 C56 C05 C06 SING N N 19 C56 C05 N09 SING N N 20 C56 C05 C18 SING N N 21 C56 C06 C07 SING N N 22 C56 C07 C08 SING N N 23 C56 C08 N09 SING N N 24 C56 N09 C10 SING N N 25 C56 C10 C13 SING N N 26 C56 N17 H17 SING N N 27 C56 C1 H1 SING N N 28 C56 C4 H4 SING N N 29 C56 C14 H141 SING N N 30 C56 C14 H142 SING N N 31 C56 C14 H143 SING N N 32 C56 C12 H121 SING N N 33 C56 C12 H122 SING N N 34 C56 C12 H123 SING N N 35 C56 C11 H111 SING N N 36 C56 C11 H112 SING N N 37 C56 C11 H113 SING N N 38 C56 C18 H181 SING N N 39 C56 C18 H182 SING N N 40 C56 C05 H05 SING N N 41 C56 C06 H061 SING N N 42 C56 C06 H062 SING N N 43 C56 C07 H071 SING N N 44 C56 C07 H072 SING N N 45 C56 C08 H081 SING N N 46 C56 C08 H082 SING N N 47 C56 C10 H101 SING N N 48 C56 C10 H102 SING N N 49 C56 C13 H131 SING N N 50 C56 C13 H132 SING N N 51 C56 C13 H133 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C56 SMILES ACDLabs 12.01 "[O-][N+](=O)c1cc(c(OC)cc1N(C)C)C(=O)NCC2N(CC)CCC2" C56 InChI InChI 1.03 "InChI=1S/C17H26N4O4/c1-5-20-8-6-7-12(20)11-18-17(22)13-9-15(21(23)24)14(19(2)3)10-16(13)25-4/h9-10,12H,5-8,11H2,1-4H3,(H,18,22)/t12-/m1/s1" C56 InChIKey InChI 1.03 AFNPLUMDSLEAPD-GFCCVEGCSA-N C56 SMILES_CANONICAL CACTVS 3.385 "CCN1CCC[C@@H]1CNC(=O)c2cc(c(cc2OC)N(C)C)[N+]([O-])=O" C56 SMILES CACTVS 3.385 "CCN1CCC[CH]1CNC(=O)c2cc(c(cc2OC)N(C)C)[N+]([O-])=O" C56 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCN1CCC[C@@H]1CNC(=O)c2cc(c(cc2OC)N(C)C)[N+](=O)[O-]" C56 SMILES "OpenEye OEToolkits" 1.9.2 "CCN1CCCC1CNC(=O)c2cc(c(cc2OC)N(C)C)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C56 "SYSTEMATIC NAME" ACDLabs 12.01 "4-(dimethylamino)-N-{[(2R)-1-ethylpyrrolidin-2-yl]methyl}-2-methoxy-5-nitrobenzamide" C56 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-(dimethylamino)-N-[[(2R)-1-ethylpyrrolidin-2-yl]methyl]-2-methoxy-5-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C56 "Create component" 2011-09-22 EBI C56 "Other modification" 2011-09-22 EBI C56 "Modify descriptor" 2014-09-05 RCSB #