data_C58 # _chem_comp.id C58 _chem_comp.name "(2S)-3-phenyl-N~1~-[2-(pyridin-4-yl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-yl]propane-1,2-diamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H25 N5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-20 _chem_comp.pdbx_modified_date 2013-02-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 415.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C58 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZH8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C58 C C C 0 1 N N S 16.201 16.812 15.226 -2.882 0.436 -0.019 C C58 1 C58 N N N 0 1 N N N 15.087 15.964 14.777 -3.103 -0.370 1.189 N C58 2 C58 S S S 0 1 Y N N 16.703 18.067 8.557 3.926 -2.533 -0.082 S C58 3 C58 C1 C1 C 0 1 N N N 17.539 16.300 14.594 -1.423 0.894 -0.067 C1 C58 4 C58 N1 N1 N 0 1 N N N 17.423 16.144 13.151 -0.542 -0.273 0.026 N1 C58 5 C58 C2 C2 C 0 1 Y N N 17.356 17.208 12.340 0.831 -0.107 0.004 C2 C58 6 C58 N2 N2 N 0 1 Y N N 17.470 18.433 12.878 1.361 1.105 0.009 N2 C58 7 C58 C3 C3 C 0 1 Y N N 17.363 19.514 12.096 2.678 1.278 -0.013 C3 C58 8 C58 N3 N3 N 0 1 Y N N 17.108 19.509 10.781 3.518 0.259 -0.041 N3 C58 9 C58 C4 C4 C 0 1 Y N N 17.002 18.290 10.258 3.069 -1.001 -0.048 C4 C58 10 C58 N4 N4 N 0 1 Y N N 18.210 23.308 13.901 4.226 5.204 0.007 N4 C58 11 C58 C5 C5 C 0 1 Y N N 17.126 17.077 10.936 1.694 -1.235 -0.024 C5 C58 12 C58 C6 C6 C 0 1 Y N N 16.994 15.941 10.026 1.366 -2.655 -0.033 C6 C58 13 C58 C7 C7 C 0 1 Y N N 16.762 16.335 8.755 2.433 -3.456 -0.062 C7 C58 14 C58 C8 C8 C 0 1 N N N 16.557 15.433 7.577 2.365 -4.973 -0.078 C8 C58 15 C58 C9 C9 C 0 1 N N N 17.022 14.028 7.908 0.966 -5.409 0.363 C9 C58 16 C58 C10 C10 C 0 1 N N N 16.560 13.609 9.287 -0.075 -4.634 -0.451 C10 C58 17 C58 C11 C11 C 0 1 N N N 17.133 14.492 10.383 -0.068 -3.170 -0.009 C11 C58 18 C58 C12 C12 C 0 1 Y N N 17.620 20.833 12.730 3.223 2.658 -0.006 C12 C58 19 C58 C13 C13 C 0 1 Y N N 17.951 20.933 14.075 4.601 2.886 -0.028 C13 C58 20 C58 C14 C14 C 0 1 Y N N 18.235 22.176 14.607 5.065 4.187 -0.020 C14 C58 21 C58 C15 C15 C 0 1 Y N N 17.886 23.204 12.610 2.919 5.032 0.029 C15 C58 22 C58 C16 C16 C 0 1 Y N N 17.585 22.008 11.990 2.370 3.766 0.023 C16 C58 23 C58 C17 C17 C 0 1 N N N 16.368 16.809 16.762 -3.800 1.660 0.009 C17 C58 24 C58 C18 C18 C 0 1 Y N N 17.459 17.754 17.199 -5.237 1.212 -0.068 C18 C58 25 C58 C19 C19 C 0 1 Y N N 17.163 19.057 17.567 -5.941 0.946 1.091 C19 C58 26 C58 C20 C20 C 0 1 Y N N 18.163 19.926 17.968 -7.259 0.535 1.021 C20 C58 27 C58 C21 C21 C 0 1 Y N N 19.471 19.502 18.008 -7.873 0.392 -0.209 C21 C58 28 C58 C22 C22 C 0 1 Y N N 19.780 18.211 17.647 -7.169 0.659 -1.369 C22 C58 29 C58 C23 C23 C 0 1 Y N N 18.780 17.342 17.245 -5.852 1.074 -1.298 C23 C58 30 C58 H H H 0 1 N N N 16.034 17.847 14.893 -3.104 -0.164 -0.902 H C58 31 C58 HN HN H 0 1 N N N 14.233 16.292 15.182 -2.556 -1.217 1.164 HN C58 32 C58 HNA HNA H 0 1 N N N 15.020 16.003 13.780 -2.905 0.165 2.021 HNA C58 33 C58 H1 H1 H 0 1 N N N 18.337 17.025 14.812 -1.236 1.416 -1.005 H1 C58 34 C58 H1A H1A H 0 1 N N N 17.795 15.327 15.039 -1.225 1.566 0.768 H1A C58 35 C58 HN1 HN1 H 0 1 N N N 18.219 15.615 12.858 -0.922 -1.163 0.104 HN1 C58 36 C58 H8 H8 H 0 1 N N N 15.488 15.411 7.318 2.560 -5.338 -1.086 H8 C58 37 C58 H8A H8A H 0 1 N N N 17.134 15.815 6.722 3.107 -5.379 0.610 H8A C58 38 C58 H9 H9 H 0 1 N N N 16.611 13.329 7.164 0.844 -6.478 0.188 H9 C58 39 C58 H9A H9A H 0 1 N N N 18.121 13.996 7.873 0.834 -5.194 1.424 H9A C58 40 C58 H10 H10 H 0 1 N N N 15.462 13.667 9.325 0.171 -4.695 -1.510 H10 C58 41 C58 H10A H10A H 0 0 N N N 16.879 12.572 9.466 -1.063 -5.061 -0.280 H10A C58 42 C58 H11 H11 H 0 1 N N N 18.199 14.254 10.517 -0.466 -3.092 1.003 H11 C58 43 C58 H11A H11A H 0 0 N N N 16.593 14.298 11.321 -0.679 -2.579 -0.690 H11A C58 44 C58 H13 H13 H 0 1 N N N 17.986 20.051 14.697 5.294 2.058 -0.050 H13 C58 45 C58 H14 H14 H 0 1 N N N 18.492 22.235 15.654 6.129 4.373 -0.037 H14 C58 46 C58 H15 H15 H 0 1 N N N 17.858 24.106 12.017 2.269 5.894 0.052 H15 C58 47 C58 H16 H16 H 0 1 N N N 17.325 21.986 10.942 1.299 3.633 0.041 H16 C58 48 C58 H17 H17 H 0 1 N N N 15.420 17.118 17.226 -3.640 2.212 0.935 H17 C58 49 C58 H17A H17A H 0 0 N N N 16.623 15.791 17.092 -3.573 2.303 -0.841 H17A C58 50 C58 H19 H19 H 0 1 N N N 16.139 19.399 17.541 -5.461 1.058 2.052 H19 C58 51 C58 H20 H20 H 0 1 N N N 17.916 20.939 18.250 -7.809 0.327 1.926 H20 C58 52 C58 H21 H21 H 0 1 N N N 20.252 20.179 18.321 -8.903 0.070 -0.265 H21 C58 53 C58 H22 H22 H 0 1 N N N 20.806 17.874 17.677 -7.649 0.547 -2.330 H22 C58 54 C58 H23 H23 H 0 1 N N N 19.033 16.330 16.964 -5.304 1.286 -2.204 H23 C58 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C58 C N SING N N 1 C58 C C1 SING N N 2 C58 C C17 SING N N 3 C58 C H SING N N 4 C58 N HN SING N N 5 C58 N HNA SING N N 6 C58 S C4 SING Y N 7 C58 S C7 SING Y N 8 C58 C1 N1 SING N N 9 C58 C1 H1 SING N N 10 C58 C1 H1A SING N N 11 C58 N1 C2 SING N N 12 C58 N1 HN1 SING N N 13 C58 C2 N2 DOUB Y N 14 C58 C2 C5 SING Y N 15 C58 N2 C3 SING Y N 16 C58 C3 N3 DOUB Y N 17 C58 C3 C12 SING N N 18 C58 N3 C4 SING Y N 19 C58 C4 C5 DOUB Y N 20 C58 N4 C14 DOUB Y N 21 C58 N4 C15 SING Y N 22 C58 C5 C6 SING Y N 23 C58 C6 C7 DOUB Y N 24 C58 C6 C11 SING N N 25 C58 C7 C8 SING N N 26 C58 C8 C9 SING N N 27 C58 C8 H8 SING N N 28 C58 C8 H8A SING N N 29 C58 C9 C10 SING N N 30 C58 C9 H9 SING N N 31 C58 C9 H9A SING N N 32 C58 C10 C11 SING N N 33 C58 C10 H10 SING N N 34 C58 C10 H10A SING N N 35 C58 C11 H11 SING N N 36 C58 C11 H11A SING N N 37 C58 C12 C13 DOUB Y N 38 C58 C12 C16 SING Y N 39 C58 C13 C14 SING Y N 40 C58 C13 H13 SING N N 41 C58 C14 H14 SING N N 42 C58 C15 C16 DOUB Y N 43 C58 C15 H15 SING N N 44 C58 C16 H16 SING N N 45 C58 C17 C18 SING N N 46 C58 C17 H17 SING N N 47 C58 C17 H17A SING N N 48 C58 C18 C19 DOUB Y N 49 C58 C18 C23 SING Y N 50 C58 C19 C20 SING Y N 51 C58 C19 H19 SING N N 52 C58 C20 C21 DOUB Y N 53 C58 C20 H20 SING N N 54 C58 C21 C22 SING Y N 55 C58 C21 H21 SING N N 56 C58 C22 C23 DOUB Y N 57 C58 C22 H22 SING N N 58 C58 C23 H23 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C58 SMILES ACDLabs 12.01 "n1ccc(cc1)c2nc(c3c(n2)sc4c3CCCC4)NCC(N)Cc5ccccc5" C58 InChI InChI 1.03 "InChI=1S/C24H25N5S/c25-18(14-16-6-2-1-3-7-16)15-27-23-21-19-8-4-5-9-20(19)30-24(21)29-22(28-23)17-10-12-26-13-11-17/h1-3,6-7,10-13,18H,4-5,8-9,14-15,25H2,(H,27,28,29)/t18-/m0/s1" C58 InChIKey InChI 1.03 NRHASZRDWOUMFD-SFHVURJKSA-N C58 SMILES_CANONICAL CACTVS 3.370 "N[C@H](CNc1nc(nc2sc3CCCCc3c12)c4ccncc4)Cc5ccccc5" C58 SMILES CACTVS 3.370 "N[CH](CNc1nc(nc2sc3CCCCc3c12)c4ccncc4)Cc5ccccc5" C58 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C[C@@H](CNc2c3c4c(sc3nc(n2)c5ccncc5)CCCC4)N" C58 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CC(CNc2c3c4c(sc3nc(n2)c5ccncc5)CCCC4)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C58 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-3-phenyl-N~1~-[2-(pyridin-4-yl)-5,6,7,8-tetrahydro[1]benzothieno[2,3-d]pyrimidin-4-yl]propane-1,2-diamine" C58 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-3-phenyl-N1-(2-pyridin-4-yl-5,6,7,8-tetrahydro-[1]benzothiolo[2,3-d]pyrimidin-4-yl)propane-1,2-diamine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C58 "Create component" 2012-12-20 EBI C58 "Initial release" 2013-02-22 RCSB #