data_C6B # _chem_comp.id C6B _chem_comp.name "[(2S,3S,4R,5S)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-11-30 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.197 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C6B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3FBA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C6B O1P O1P O 0 1 N N N 94.829 44.574 139.683 -2.829 2.368 -1.092 O1P C6B 1 C6B P P P 0 1 N N N 94.404 46.183 139.618 -2.964 1.327 0.129 P C6B 2 C6B O2P O2P O 0 1 N N N 92.976 46.314 140.488 -3.033 2.136 1.519 O2P C6B 3 C6B O3P O3P O 0 1 N N N 94.314 46.727 138.203 -4.198 0.527 -0.039 O3P C6B 4 C6B "O3'" "O3'" O 0 1 N N N 95.530 46.960 140.575 -1.686 0.347 0.142 "O3'" C6B 5 C6B "C3'" "C3'" C 0 1 N N S 96.843 47.039 140.009 -1.408 -0.582 -0.908 "C3'" C6B 6 C6B "C2'" "C2'" C 0 1 N N R 97.295 48.485 139.770 -0.032 -0.288 -1.555 "C2'" C6B 7 C6B "O2'" "O2'" O 0 1 N N N 97.341 49.271 140.976 0.360 1.063 -1.303 "O2'" C6B 8 C6B "C4'" "C4'" C 0 1 N N S 98.016 46.364 140.818 -1.202 -2.010 -0.342 "C4'" C6B 9 C6B "C5'" "C5'" C 0 1 N N N 97.927 46.277 142.366 -2.160 -2.272 0.822 "C5'" C6B 10 C6B "O5'" "O5'" O 0 1 N N N 98.277 44.956 142.814 -2.032 -3.629 1.249 "O5'" C6B 11 C6B "O4'" "O4'" O 0 1 N N N 99.146 47.259 140.522 0.166 -1.996 0.119 "O4'" C6B 12 C6B "C1'" "C1'" C 0 1 N N S 98.653 47.953 139.314 0.930 -1.268 -0.857 "C1'" C6B 13 C6B N1 N1 N 0 1 N N N 99.632 48.689 138.482 2.005 -0.525 -0.195 N1 C6B 14 C6B C6 C6 C 0 1 N N N 99.500 48.482 137.102 1.890 -0.196 1.123 C6 C6B 15 C6B C5 C5 C 0 1 N N N 100.379 49.101 136.233 2.890 0.491 1.724 C5 C6B 16 C6B C4 C4 C 0 1 N N N 101.376 49.900 136.762 4.024 0.849 0.966 C4 C6B 17 C6B N4 N4 N 0 1 N N N 102.208 50.477 135.905 5.055 1.547 1.552 N4 C6B 18 C6B N3 N3 N 0 1 N N N 101.488 50.080 138.103 4.092 0.507 -0.314 N3 C6B 19 C6B C2 C2 C 0 1 N N N 100.655 49.497 138.996 3.103 -0.174 -0.889 C2 C6B 20 C6B O2 O2 O 0 1 N N N 100.779 49.673 140.216 3.191 -0.481 -2.067 O2 C6B 21 C6B HO1P HO1P H 0 0 N N N 94.910 44.231 138.801 -2.041 2.927 -1.047 HO1P C6B 22 C6B HO2P HO2P H 0 0 N N N 93.172 46.339 141.417 -3.780 2.747 1.582 HO2P C6B 23 C6B "H3'" "H3'" H 0 1 N N N 96.693 46.471 139.079 -2.200 -0.570 -1.656 "H3'" C6B 24 C6B "H2'" "H2'" H 0 1 N N N 96.719 49.171 139.131 -0.066 -0.481 -2.627 "H2'" C6B 25 C6B "HO2'" "HO2'" H 0 0 N N N 97.351 48.694 141.730 1.166 1.331 -1.767 "HO2'" C6B 26 C6B "H4'" "H4'" H 0 1 N N N 98.052 45.308 140.513 -1.338 -2.756 -1.125 "H4'" C6B 27 C6B "H5'" "H5'" H 0 1 N N N 98.622 47.005 142.809 -1.916 -1.606 1.650 "H5'" C6B 28 C6B "H5'A" "H5'A" H 0 0 N N N 96.896 46.499 142.678 -3.184 -2.088 0.498 "H5'A" C6B 29 C6B "HO5'" "HO5'" H 0 0 N N N 98.354 44.377 142.065 -2.612 -3.866 1.985 "HO5'" C6B 30 C6B "H1'" "H1'" H 0 1 N N N 98.481 47.343 138.415 1.351 -1.959 -1.588 "H1'" C6B 31 C6B H6 H6 H 0 1 N N N 98.717 47.843 136.720 1.011 -0.481 1.682 H6 C6B 32 C6B H5 H5 H 0 1 N N N 100.289 48.964 135.166 2.819 0.762 2.767 H5 C6B 33 C6B HN4 HN4 H 0 1 N N N 102.878 51.024 136.407 5.003 1.795 2.488 HN4 C6B 34 C6B HN4A HN4A H 0 0 N N N 102.171 50.380 134.910 5.834 1.791 1.028 HN4A C6B 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C6B O1P P SING N N 1 C6B P O2P SING N N 2 C6B P O3P DOUB N N 3 C6B P "O3'" SING N N 4 C6B "O3'" "C3'" SING N N 5 C6B "C3'" "C2'" SING N N 6 C6B "C3'" "C4'" SING N N 7 C6B "C2'" "O2'" SING N N 8 C6B "C2'" "C1'" SING N N 9 C6B "C4'" "C5'" SING N N 10 C6B "C4'" "O4'" SING N N 11 C6B "C5'" "O5'" SING N N 12 C6B "O4'" "C1'" SING N N 13 C6B "C1'" N1 SING N N 14 C6B N1 C6 SING N N 15 C6B N1 C2 SING N N 16 C6B C6 C5 DOUB N N 17 C6B C5 C4 SING N N 18 C6B C4 N4 SING N N 19 C6B C4 N3 DOUB N N 20 C6B N3 C2 SING N N 21 C6B C2 O2 DOUB N N 22 C6B O1P HO1P SING N N 23 C6B O2P HO2P SING N N 24 C6B "C3'" "H3'" SING N N 25 C6B "C2'" "H2'" SING N N 26 C6B "O2'" "HO2'" SING N N 27 C6B "C4'" "H4'" SING N N 28 C6B "C5'" "H5'" SING N N 29 C6B "C5'" "H5'A" SING N N 30 C6B "O5'" "HO5'" SING N N 31 C6B "C1'" "H1'" SING N N 32 C6B C6 H6 SING N N 33 C6B C5 H5 SING N N 34 C6B N4 HN4 SING N N 35 C6B N4 HN4A SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C6B SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2OC(C(OP(=O)(O)O)C2O)CO" C6B SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@H]2O[C@@H](CO)[C@@H](O[P](O)(O)=O)[C@H]2O" C6B SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO)[CH](O[P](O)(O)=O)[CH]2O" C6B SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)[C@@H]2[C@@H]([C@@H]([C@@H](O2)CO)OP(=O)(O)O)O" C6B SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)CO)OP(=O)(O)O)O" C6B InChI InChI 1.03 "InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-6(14)7(4(3-13)19-8)20-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6+,7+,8-/m0/s1" C6B InChIKey InChI 1.03 UOOOPKANIPLQPU-IHBLQFBFSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C6B "SYSTEMATIC NAME" ACDLabs 10.04 "4-amino-1-(3-O-phosphono-beta-L-lyxofuranosyl)pyrimidin-2(1H)-one" C6B "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,4R,5S)-5-(4-amino-2-oxo-pyrimidin-1-yl)-4-hydroxy-2-(hydroxymethyl)oxolan-3-yl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C6B "Create component" 2008-11-30 PDBJ C6B "Modify descriptor" 2011-06-04 RCSB #