data_C6G # _chem_comp.id C6G _chem_comp.name "6-(carboxymethoxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H16 N5 O9 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-04-28 _chem_comp.pdbx_modified_date 2012-06-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 405.257 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C6G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ENN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C6G P P P 0 1 N N N 14.105 18.873 -25.273 -5.935 -1.422 0.413 P C6G 1 C6G OP1 O1P O 0 1 N N N 13.954 20.266 -25.963 -7.074 -0.853 -0.342 O1P C6G 2 C6G OP2 O2P O 0 1 N N N 15.577 18.537 -24.899 -5.406 -2.747 -0.332 O2P C6G 3 C6G "O5'" "O5'" O 0 1 N N N 13.079 18.830 -24.082 -4.747 -0.338 0.490 "O5'" C6G 4 C6G "C5'" "C5'" C 0 1 N N N 12.715 20.137 -23.768 -4.177 0.275 -0.668 "C5'" C6G 5 C6G "C4'" "C4'" C 0 1 N N R 12.112 20.489 -22.540 -3.078 1.250 -0.241 "C4'" C6G 6 C6G "O4'" "O4'" O 0 1 N N N 12.993 21.489 -21.991 -1.968 0.538 0.346 "O4'" C6G 7 C6G "C1'" "C1'" C 0 1 N N R 12.478 22.748 -22.325 -0.820 1.397 0.250 "C1'" C6G 8 C6G N9 N9 N 0 1 Y N N 13.572 23.518 -22.828 0.387 0.595 0.040 N9 C6G 9 C6G C8 C8 C 0 1 Y N N 14.662 23.042 -23.447 0.440 -0.659 -0.496 C8 C6G 10 C6G N7 N7 N 0 1 Y N N 15.531 24.054 -23.621 1.673 -1.072 -0.541 N7 C6G 11 C6G C5 C5 C 0 1 Y N N 14.991 25.174 -23.084 2.489 -0.113 -0.037 C5 C6G 12 C6G C4 C4 C 0 1 Y N N 13.748 24.816 -22.569 1.673 0.968 0.342 C4 C6G 13 C6G N3 N3 N 0 1 Y N N 13.004 25.747 -21.980 2.235 2.050 0.867 N3 C6G 14 C6G C2 C2 C 0 1 Y N N 13.459 26.997 -21.888 3.546 2.112 1.038 C2 C6G 15 C6G N2 N2 N 0 1 N N N 12.668 27.976 -21.235 4.096 3.257 1.588 N2 C6G 16 C6G N1 N1 N 0 1 Y N N 14.638 27.391 -22.361 4.351 1.112 0.699 N1 C6G 17 C6G C6 C6 C 0 1 Y N N 15.423 26.498 -22.963 3.874 -0.002 0.162 C6 C6G 18 C6G O6 O6 O 0 1 N N N 16.647 26.899 -23.444 4.705 -1.014 -0.185 O6 C6G 19 C6G "C2'" "C2'" C 0 1 N N N 11.289 22.575 -23.177 -1.047 2.332 -0.953 "C2'" C6G 20 C6G "C3'" "C3'" C 0 1 N N S 10.867 21.224 -22.811 -2.450 1.941 -1.478 "C3'" C6G 21 C6G "O3'" "O3'" O 0 1 N N N 10.150 21.308 -21.651 -3.198 3.102 -1.847 "O3'" C6G 22 C6G C C C 0 1 N N N 18.020 28.765 -24.212 6.862 -2.039 -0.393 C C6G 23 C6G O O O 0 1 N N N 17.615 29.629 -25.059 6.271 -2.981 -0.865 O C6G 24 C6G O7 O7 O 0 1 N N N 19.244 28.674 -24.071 8.198 -2.081 -0.265 O7 C6G 25 C6G CH3 CH3 C 0 1 N N N 17.042 28.206 -23.203 6.100 -0.818 0.052 CH3 C6G 26 C6G HOP2 HOP2 H 0 0 N N N 16.142 19.254 -25.161 -4.658 -3.174 0.108 HOP2 C6G 27 C6G "H5'" "H5'" H 0 1 N N N 13.636 20.734 -23.837 -3.751 -0.492 -1.314 "H5'" C6G 28 C6G "H5''" "H5''" H 0 0 N N N 12.013 20.454 -24.553 -4.952 0.817 -1.211 "H5''" C6G 29 C6G "H4'" "H4'" H 0 1 N N N 11.958 19.634 -21.865 -3.472 1.989 0.457 "H4'" C6G 30 C6G "H1'" "H1'" H 0 1 N N N 12.138 23.228 -21.396 -0.720 1.985 1.163 "H1'" C6G 31 C6G H8 H8 H 0 1 N N N 14.816 22.018 -23.754 -0.415 -1.225 -0.834 H8 C6G 32 C6G H21 H21 H 0 1 N N N 13.152 28.851 -21.236 3.523 3.997 1.842 H21 C6G 33 C6G H22 H22 H 0 1 N N N 11.797 28.076 -21.716 5.055 3.319 1.721 H22 C6G 34 C6G "H2'" "H2'" H 0 1 N N N 11.546 22.641 -24.245 -1.036 3.375 -0.635 "H2'" C6G 35 C6G "H2''" "H2''" H 0 0 N N N 10.513 23.317 -22.940 -0.292 2.158 -1.720 "H2''" C6G 36 C6G "H3'" "H3'" H 0 1 N N N 10.300 20.751 -23.627 -2.374 1.247 -2.314 "H3'" C6G 37 C6G "HO3'" "HO3'" H 0 0 N N N 9.864 20.440 -21.392 -2.796 3.619 -2.559 "HO3'" C6G 38 C6G HO7 HO7 H 0 1 N N N 19.676 29.294 -24.647 8.643 -2.886 -0.564 HO7 C6G 39 C6G H31 H31 H 0 1 N N N 17.514 28.244 -22.210 6.445 0.050 -0.509 H31 C6G 40 C6G H32 H32 H 0 1 N N N 16.144 28.842 -23.207 6.268 -0.653 1.117 H32 C6G 41 C6G OP3 O3P O 0 1 N Y N ? ? ? -6.414 -1.799 1.903 O3P C6G 42 C6G HOP3 H1 H 0 0 N Y N ? ? ? -7.129 -2.449 1.934 H1 C6G 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C6G OP1 P DOUB N N 1 C6G P OP2 SING N N 2 C6G P "O5'" SING N N 3 C6G O C DOUB N N 4 C6G C O7 SING N N 5 C6G C CH3 SING N N 6 C6G "O5'" "C5'" SING N N 7 C6G "C5'" "C4'" SING N N 8 C6G N7 C8 DOUB Y N 9 C6G N7 C5 SING Y N 10 C6G C8 N9 SING Y N 11 C6G O6 CH3 SING N N 12 C6G O6 C6 SING N N 13 C6G "C2'" "C3'" SING N N 14 C6G "C2'" "C1'" SING N N 15 C6G C5 C6 DOUB Y N 16 C6G C5 C4 SING Y N 17 C6G C6 N1 SING Y N 18 C6G N9 C4 SING Y N 19 C6G N9 "C1'" SING N N 20 C6G "C3'" "C4'" SING N N 21 C6G "C3'" "O3'" SING N N 22 C6G C4 N3 DOUB Y N 23 C6G "C4'" "O4'" SING N N 24 C6G N1 C2 DOUB Y N 25 C6G "C1'" "O4'" SING N N 26 C6G N3 C2 SING Y N 27 C6G C2 N2 SING N N 28 C6G OP2 HOP2 SING N N 29 C6G "C5'" "H5'" SING N N 30 C6G "C5'" "H5''" SING N N 31 C6G "C4'" "H4'" SING N N 32 C6G "C1'" "H1'" SING N N 33 C6G C8 H8 SING N N 34 C6G N2 H21 SING N N 35 C6G N2 H22 SING N N 36 C6G "C2'" "H2'" SING N N 37 C6G "C2'" "H2''" SING N N 38 C6G "C3'" "H3'" SING N N 39 C6G "O3'" "HO3'" SING N N 40 C6G O7 HO7 SING N N 41 C6G CH3 H31 SING N N 42 C6G CH3 H32 SING N N 43 C6G P OP3 SING N N 44 C6G OP3 HOP3 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C6G SMILES ACDLabs 12.01 "O=C(O)COc3nc(nc1c3ncn1C2OC(C(O)C2)COP(=O)(O)O)N" C6G InChI InChI 1.03 "InChI=1S/C12H16N5O9P/c13-12-15-10-9(11(16-12)24-3-8(19)20)14-4-17(10)7-1-5(18)6(26-7)2-25-27(21,22)23/h4-7,18H,1-3H2,(H,19,20)(H2,13,15,16)(H2,21,22,23)/t5-,6+,7+/m0/s1" C6G InChIKey InChI 1.03 HZVGFAJHLDXTMX-RRKCRQDMSA-N C6G SMILES_CANONICAL CACTVS 3.370 "Nc1nc(OCC(O)=O)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c2n1" C6G SMILES CACTVS 3.370 "Nc1nc(OCC(O)=O)c2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c2n1" C6G SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)nc(nc2OCC(=O)O)N" C6G SMILES "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)nc(nc2OCC(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C6G "SYSTEMATIC NAME" ACDLabs 12.01 "6-(carboxymethoxy)-9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-9H-purin-2-amine" C6G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[2-azanyl-9-[(2R,4S,5R)-4-oxidanyl-5-(phosphonooxymethyl)oxolan-2-yl]purin-6-yl]oxyethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C6G "Create component" 2012-04-28 RCSB #