2'-deoxy-5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonomethyl)phosphoryl]amino}phosphoryl]-3,4-dihydrothymidine
non-polymer
HETAIN
C11 H20 N3 O12 P3
0
2014-11-13
2015-06-26
N
REL
479.211
C6T
N
Corina
N
4RT3
RCSB
O4
O
0
1
N
N
N
10.754
7.723
11.003
-8.155
2.112
-0.957
O4
C6T
1
C4
C
0
1
N
N
N
9.384
7.705
10.780
-7.258
1.376
-0.589
C4
C6T
2
C5
C
0
1
N
N
N
8.547
7.268
11.820
-7.322
0.750
0.679
C5
C6T
3
C7
C
0
1
N
N
N
9.110
6.812
13.164
-8.501
0.986
1.588
C7
C6T
4
C6
C
0
1
N
N
N
7.164
7.233
11.554
-6.314
-0.062
1.063
C6
C6T
5
N3
N
0
1
N
N
N
8.882
8.098
9.590
-6.196
1.145
-1.388
N3
C6T
6
C2
C
0
1
N
N
N
7.569
8.049
9.417
-5.205
0.331
-0.980
C2
C6T
7
O2
O
0
1
N
N
N
7.123
8.389
8.343
-4.254
0.131
-1.711
O2
C6T
8
N1
N
0
1
N
N
N
6.715
7.640
10.355
-5.252
-0.266
0.225
N1
C6T
9
C1'
C
0
1
N
N
R
5.290
7.559
10.078
-4.158
-1.148
0.641
C1'
C6T
10
C2'
C
0
1
N
N
N
5.002
6.340
9.705
-4.045
-2.354
-0.318
C2'
C6T
11
C3'
C
0
1
N
N
S
4.459
5.606
10.934
-2.524
-2.599
-0.435
C3'
C6T
12
O3'
O
0
1
N
N
N
3.689
4.474
10.648
-2.188
-3.902
0.046
O3'
C6T
13
O4'
O
0
1
N
N
N
4.464
7.784
11.413
-2.891
-0.465
0.526
O4'
C6T
14
C4'
C
0
1
N
N
R
3.688
6.764
11.583
-1.898
-1.512
0.467
C4'
C6T
15
C5'
C
0
1
N
N
N
3.441
6.503
13.113
-0.603
-0.985
-0.155
C5'
C6T
16
O5'
O
0
1
N
N
N
4.709
6.516
13.769
0.019
-0.067
0.747
O5'
C6T
17
PA
P
0
1
N
N
N
5.045
5.344
14.797
1.405
0.683
0.417
PA
C6T
18
O1A
O
0
1
N
N
N
3.908
5.301
15.811
1.674
1.823
1.521
O1A
C6T
19
O2A
O
0
1
N
N
N
6.359
5.684
15.458
1.323
1.304
-0.924
O2A
C6T
20
N3A
N
0
1
N
N
N
5.154
3.920
13.908
2.666
-0.431
0.443
N3A
C6T
21
PB
P
0
1
N
N
N
4.004
2.684
13.800
4.136
0.313
0.103
PB
C6T
22
O1B
O
0
1
N
N
N
3.959
2.232
12.267
4.406
1.359
1.115
O1B
C6T
23
O2B
O
0
1
N
N
N
2.611
3.117
14.379
4.071
0.985
-1.359
O2B
C6T
24
C3B
C
0
1
N
N
N
4.634
1.243
14.744
5.470
-0.929
0.142
C3B
C6T
25
PG
P
0
1
N
N
N
4.129
1.154
16.500
7.062
-0.122
-0.227
PG
C6T
26
O2G
O
0
1
N
N
N
2.892
0.309
16.573
7.003
0.496
-1.571
O2G
C6T
27
O1G
O
0
1
N
N
N
5.205
0.547
17.365
7.356
1.016
0.874
O1G
C6T
28
O3G
O
0
1
N
N
N
3.808
2.583
16.904
8.241
-1.219
-0.193
O3G
C6T
29
H1
H
0
1
N
N
N
8.284
6.514
13.826
-9.203
1.665
1.104
H1
C6T
30
H2
H
0
1
N
N
N
9.782
5.955
13.008
-8.996
0.037
1.795
H2
C6T
31
H3
H
0
1
N
N
N
9.671
7.638
13.626
-8.155
1.426
2.524
H3
C6T
32
H4
H
0
1
N
N
N
6.472
6.883
12.306
-6.346
-0.549
2.027
H4
C6T
33
H5
H
0
1
N
N
N
9.485
8.417
8.859
-6.147
1.568
-2.259
H5
C6T
34
H6
H
0
1
N
N
N
4.992
8.320
9.341
-4.314
-1.488
1.664
H6
C6T
35
H7
H
0
1
N
N
N
4.241
6.359
8.911
-4.541
-3.227
0.106
H7
C6T
36
H8
H
0
1
N
N
N
5.907
5.836
9.334
-4.468
-2.108
-1.292
H8
C6T
37
H9
H
0
1
N
N
N
5.305
5.340
11.586
-2.195
-2.475
-1.467
H9
C6T
38
H10
H
0
1
N
N
N
3.884
3.790
11.278
-2.604
-4.622
-0.448
H10
C6T
39
H11
H
0
1
N
N
N
2.715
6.876
11.082
-1.707
-1.910
1.464
H11
C6T
40
H12
H
0
1
N
N
N
2.797
7.292
13.528
0.072
-1.818
-0.349
H12
C6T
41
H13
H
0
1
N
N
N
2.958
5.525
13.252
-0.831
-0.475
-1.091
H13
C6T
42
H14
H
0
1
N
N
N
4.247
5.499
16.676
1.739
1.488
2.426
H14
C6T
43
H15
H
0
1
N
N
N
5.981
3.471
14.246
2.489
-1.192
-0.195
H15
C6T
44
H16
H
0
1
N
N
N
1.948
3.037
13.703
3.897
0.357
-2.073
H16
C6T
45
H17
H
0
1
N
N
N
4.277
0.331
14.244
5.514
-1.384
1.131
H17
C6T
46
H18
H
0
1
N
N
N
5.733
1.273
14.711
5.271
-1.699
-0.604
H18
C6T
47
H19
H
0
1
N
N
N
4.874
-0.243
17.775
7.408
0.682
1.780
H19
C6T
48
H20
H
0
1
N
N
N
2.886
2.651
17.122
9.118
-0.859
-0.381
H20
C6T
49
doub
N
N
1
sing
N
N
2
sing
N
N
3
sing
N
N
4
sing
N
N
5
sing
N
N
6
sing
N
N
7
sing
N
N
8
sing
N
N
9
sing
N
N
10
doub
N
N
11
sing
N
N
12
sing
N
N
13
sing
N
N
14
doub
N
N
15
sing
N
N
16
sing
N
N
17
doub
N
N
18
sing
N
N
19
sing
N
N
20
sing
N
N
21
sing
N
N
22
sing
N
N
23
sing
N
N
24
sing
N
N
25
doub
N
N
26
sing
N
N
27
doub
N
N
28
sing
N
N
29
sing
N
N
30
sing
N
N
31
sing
N
N
32
sing
N
N
33
sing
N
N
34
sing
N
N
35
sing
N
N
36
sing
N
N
37
sing
N
N
38
sing
N
N
39
sing
N
N
40
sing
N
N
41
sing
N
N
42
sing
N
N
43
sing
N
N
44
sing
N
N
45
sing
N
N
46
sing
N
N
47
sing
N
N
48
sing
N
N
49
sing
N
N
50
O=P(O)(O)CP(=O)(O)NP(=O)(O)OCC2OC(N1C(=O)NC(=O)C(=C1)C)CC2O
InChI=1S/C11H20N3O12P3/c1-6-3-14(11(17)12-10(6)16)9-2-7(15)8(26-9)4-25-29(23,24)13-27(18,19)5-28(20,21)22/h3,7-9,15H,2,4-5H2,1H3,(H,12,16,17)(H2,20,21,22)(H3,13,18,19,23,24)/t7-,8+,9+/m0/s1
ARKIPWDBYLJBIH-DJLDLDEBSA-N
CC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)N[P](O)(=O)C[P](O)(O)=O)O2)C(=O)NC1=O
CC1=CN([CH]2C[CH](O)[CH](CO[P](O)(=O)N[P](O)(=O)C[P](O)(O)=O)O2)C(=O)NC1=O
CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(NP(=O)(CP(=O)(O)O)O)O)O
CC1=CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(NP(=O)(CP(=O)(O)O)O)O)O
2'-deoxy-5'-O-[(S)-hydroxy{[(R)-hydroxy(phosphonomethyl)phosphoryl]amino}phosphoryl]-3,4-dihydrothymidine
[[[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]-oxidanyl-phosphoryl]methylphosphonic acid
RCSB
RCSB