data_C8J # _chem_comp.id C8J _chem_comp.name "(2~{R})-5-[2-(3-aminocarbonylphenyl)ethyl-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]amino]-2-azanyl-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H32 N8 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-19 _chem_comp.pdbx_modified_date 2018-01-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 528.561 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C8J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6B1A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C8J C4 C1 C 0 1 Y N N 2.844 1.842 -9.596 -4.439 -1.531 0.365 C4 C8J 1 C8J C14 C2 C 0 1 N N N -7.320 -3.669 -7.963 4.731 -4.832 1.297 C14 C8J 2 C8J C5 C3 C 0 1 Y N N 3.308 1.300 -10.792 -5.322 -0.723 1.100 C5 C8J 3 C8J C6 C4 C 0 1 Y N N 4.638 0.933 -10.902 -6.478 -1.318 1.633 C6 C8J 4 C8J C11 C5 C 0 1 Y N N -8.763 -2.272 -6.524 6.325 -3.142 0.396 C11 C8J 5 C8J C7 C6 C 0 1 Y N N -6.822 -0.261 -6.285 4.365 -1.182 0.490 C7 C8J 6 C8J C8 C7 C 0 1 Y N N 1.180 1.733 -10.985 -3.682 0.539 0.450 C8 C8J 7 C8J C9 C8 C 0 1 Y N N -8.056 -0.138 -5.648 5.636 -0.877 0.038 C9 C8J 8 C8J C10 C9 C 0 1 Y N N -9.029 -1.135 -5.764 6.612 -1.857 -0.014 C10 C8J 9 C8J C12 C10 C 0 1 Y N N -7.534 -2.406 -7.159 5.046 -3.455 0.857 C12 C8J 10 C8J C13 C11 C 0 1 Y N N -6.558 -1.403 -7.060 4.065 -2.464 0.902 C13 C8J 11 C8J N1 N1 N 0 1 Y N N 5.457 1.112 -9.844 -6.680 -2.614 1.418 N1 C8J 12 C8J C3 C12 C 0 1 N N N -5.834 0.882 -6.104 3.308 -0.108 0.543 C3 C8J 13 C8J N3 N2 N 0 1 Y N N 3.704 2.009 -8.567 -4.725 -2.818 0.202 N3 C8J 14 C8J N N3 N 0 1 N N N -1.675 2.729 -1.571 0.140 5.309 1.773 N C8J 15 C8J CA C13 C 0 1 N N R -2.903 2.499 -2.371 0.676 5.699 0.463 CA C8J 16 C8J C C14 C 0 1 N N N -4.129 2.400 -1.470 1.302 7.066 0.562 C C8J 17 C8J O O1 O 0 1 N N N -5.176 3.047 -1.703 1.631 7.503 1.640 O C8J 18 C8J CB C15 C 0 1 N N N -3.001 3.572 -3.456 1.733 4.685 0.022 CB C8J 19 C8J CG C16 C 0 1 N N N -3.157 2.005 -5.499 2.130 2.309 -0.641 CG C8J 20 C8J ND N4 N 0 1 N N N -3.683 1.955 -6.887 1.521 0.975 -0.733 ND C8J 21 C8J CE C17 C 0 1 N N N -4.696 0.892 -7.122 2.551 -0.072 -0.785 CE C8J 22 C8J OXT O2 O 0 1 N N N -4.078 1.630 -0.493 1.494 7.799 -0.546 OXT C8J 23 C8J C1 C18 C 0 1 N N N -3.784 3.144 -4.699 1.073 3.323 -0.200 C1 C8J 24 C8J "C1'" C19 C 0 1 N N R 0.666 2.695 -8.695 -2.251 -1.097 -0.832 "C1'" C8J 25 C8J C2 C20 C 0 1 Y N N 4.993 1.643 -8.698 -5.820 -3.333 0.720 C2 C8J 26 C8J "C2'" C21 C 0 1 N N R -0.250 3.797 -9.187 -2.560 -0.966 -2.341 "C2'" C8J 27 C8J "C3'" C22 C 0 1 N N S -1.325 3.823 -8.112 -1.235 -0.456 -2.952 "C3'" C8J 28 C8J "C4'" C23 C 0 1 N N R -1.333 2.401 -7.553 -0.284 -0.338 -1.740 "C4'" C8J 29 C8J "C5'" C24 C 0 1 N N N -2.608 1.633 -7.835 0.621 0.886 -1.891 "C5'" C8J 30 C8J N16 N5 N 0 1 N N N -6.116 -4.239 -8.033 5.681 -5.787 1.253 N16 C8J 31 C8J N6 N6 N 0 1 N N N 5.106 0.390 -12.051 -7.385 -0.572 2.367 N6 C8J 32 C8J N7 N7 N 0 1 Y N N 2.263 1.236 -11.640 -4.802 0.528 1.114 N7 C8J 33 C8J N9 N8 N 0 1 Y N N 1.542 2.114 -9.742 -3.417 -0.707 -0.036 N9 C8J 34 C8J O15 O3 O 0 1 N N N -8.288 -4.145 -8.527 3.616 -5.101 1.699 O15 C8J 35 C8J "O2'" O4 O 0 1 N N N 0.467 5.007 -9.203 -2.909 -2.237 -2.892 "O2'" C8J 36 C8J "O3'" O5 O 0 1 N N N -0.920 4.676 -7.044 -0.726 -1.396 -3.899 "O3'" C8J 37 C8J "O4'" O6 O 0 1 N N N -0.261 1.726 -8.208 -1.156 -0.185 -0.600 "O4'" C8J 38 C8J H1 H1 H 0 1 N N N -9.509 -3.047 -6.619 7.088 -3.906 0.355 H1 C8J 39 C8J H2 H2 H 0 1 N N N 0.184 1.811 -11.396 -3.058 1.408 0.301 H2 C8J 40 C8J H3 H3 H 0 1 N N N -8.263 0.741 -5.056 5.868 0.130 -0.275 H3 C8J 41 C8J H4 H4 H 0 1 N N N -9.982 -1.025 -5.267 7.600 -1.614 -0.376 H4 C8J 42 C8J H5 H5 H 0 1 N N N -5.614 -1.508 -7.574 3.073 -2.700 1.259 H5 C8J 43 C8J H6 H6 H 0 1 N N N -5.396 0.804 -5.098 2.611 -0.324 1.353 H6 C8J 44 C8J H7 H7 H 0 1 N N N -6.384 1.831 -6.192 3.781 0.858 0.719 H7 C8J 45 C8J H8 H8 H 0 1 N N N -1.605 2.030 -0.859 -0.342 4.424 1.719 H8 C8J 46 C8J H9 H9 H 0 1 N N N -0.874 2.678 -2.168 0.871 5.280 2.469 H9 C8J 47 C8J H11 H11 H 0 1 N N N -2.794 1.530 -2.881 -0.132 5.722 -0.268 H11 C8J 48 C8J H12 H12 H 0 1 N N N -1.981 3.840 -3.768 2.194 5.021 -0.907 H12 C8J 49 C8J H13 H13 H 0 1 N N N -3.497 4.454 -3.024 2.497 4.596 0.795 H13 C8J 50 C8J H14 H14 H 0 1 N N N -3.381 1.052 -4.998 2.940 2.288 0.088 H14 C8J 51 C8J H15 H15 H 0 1 N N N -2.068 2.152 -5.536 2.525 2.596 -1.615 H15 C8J 52 C8J H17 H17 H 0 1 N N N -5.128 1.041 -8.122 3.248 0.145 -1.595 H17 C8J 53 C8J H18 H18 H 0 1 N N N -4.189 -0.083 -7.083 2.078 -1.038 -0.961 H18 C8J 54 C8J H19 H19 H 0 1 N N N -4.908 1.648 -0.031 1.899 8.669 -0.432 H19 C8J 55 C8J H20 H20 H 0 1 N N N -3.874 4.017 -5.362 0.612 2.987 0.729 H20 C8J 56 C8J H21 H21 H 0 1 N N N -4.786 2.823 -4.377 0.309 3.411 -0.973 H21 C8J 57 C8J H22 H22 H 0 1 N N N 1.284 3.081 -7.871 -1.953 -2.117 -0.593 H22 C8J 58 C8J H23 H23 H 0 1 N N N 5.668 1.778 -7.866 -6.023 -4.383 0.569 H23 C8J 59 C8J H24 H24 H 0 1 N N N -0.680 3.545 -10.167 -3.360 -0.244 -2.506 H24 C8J 60 C8J H25 H25 H 0 1 N N N -2.306 4.095 -8.530 -1.381 0.518 -3.419 H25 C8J 61 C8J H26 H26 H 0 1 N N N -1.162 2.438 -6.467 0.316 -1.243 -1.640 H26 C8J 62 C8J H27 H27 H 0 1 N N N -2.950 1.878 -8.851 0.009 1.786 -1.945 H27 C8J 63 C8J H28 H28 H 0 1 N N N -2.392 0.556 -7.771 1.211 0.792 -2.803 H28 C8J 64 C8J H29 H29 H 0 1 N N N -5.991 -5.080 -8.559 6.571 -5.572 0.932 H29 C8J 65 C8J H30 H30 H 0 1 N N N -5.339 -3.825 -7.559 5.475 -6.690 1.541 H30 C8J 66 C8J H31 H31 H 0 1 N N N 6.078 0.178 -11.948 -7.226 0.373 2.517 H31 C8J 67 C8J H32 H32 H 0 1 N N N 4.601 -0.450 -12.253 -8.179 -0.995 2.730 H32 C8J 68 C8J H33 H33 H 0 1 N N N -0.098 5.706 -9.510 -3.112 -2.214 -3.837 H33 C8J 69 C8J H34 H34 H 0 1 N N N -1.595 4.689 -6.375 -1.313 -1.554 -4.652 H34 C8J 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C8J N6 C6 SING N N 1 C8J N7 C8 DOUB Y N 2 C8J N7 C5 SING Y N 3 C8J C8 N9 SING Y N 4 C8J C6 C5 DOUB Y N 5 C8J C6 N1 SING Y N 6 C8J C5 C4 SING Y N 7 C8J N1 C2 DOUB Y N 8 C8J N9 C4 SING Y N 9 C8J N9 "C1'" SING N N 10 C8J C4 N3 DOUB Y N 11 C8J "O2'" "C2'" SING N N 12 C8J "C2'" "C1'" SING N N 13 C8J "C2'" "C3'" SING N N 14 C8J C2 N3 SING Y N 15 C8J "C1'" "O4'" SING N N 16 C8J O15 C14 DOUB N N 17 C8J "O4'" "C4'" SING N N 18 C8J "C3'" "C4'" SING N N 19 C8J "C3'" "O3'" SING N N 20 C8J N16 C14 SING N N 21 C8J C14 C12 SING N N 22 C8J "C5'" "C4'" SING N N 23 C8J "C5'" ND SING N N 24 C8J C12 C13 DOUB Y N 25 C8J C12 C11 SING Y N 26 C8J CE ND SING N N 27 C8J CE C3 SING N N 28 C8J C13 C7 SING Y N 29 C8J ND CG SING N N 30 C8J C11 C10 DOUB Y N 31 C8J C7 C3 SING N N 32 C8J C7 C9 DOUB Y N 33 C8J C10 C9 SING Y N 34 C8J CG C1 SING N N 35 C8J C1 CB SING N N 36 C8J CB CA SING N N 37 C8J CA N SING N N 38 C8J CA C SING N N 39 C8J O C DOUB N N 40 C8J C OXT SING N N 41 C8J C11 H1 SING N N 42 C8J C8 H2 SING N N 43 C8J C9 H3 SING N N 44 C8J C10 H4 SING N N 45 C8J C13 H5 SING N N 46 C8J C3 H6 SING N N 47 C8J C3 H7 SING N N 48 C8J N H8 SING N N 49 C8J N H9 SING N N 50 C8J CA H11 SING N N 51 C8J CB H12 SING N N 52 C8J CB H13 SING N N 53 C8J CG H14 SING N N 54 C8J CG H15 SING N N 55 C8J CE H17 SING N N 56 C8J CE H18 SING N N 57 C8J OXT H19 SING N N 58 C8J C1 H20 SING N N 59 C8J C1 H21 SING N N 60 C8J "C1'" H22 SING N N 61 C8J C2 H23 SING N N 62 C8J "C2'" H24 SING N N 63 C8J "C3'" H25 SING N N 64 C8J "C4'" H26 SING N N 65 C8J "C5'" H27 SING N N 66 C8J "C5'" H28 SING N N 67 C8J N16 H29 SING N N 68 C8J N16 H30 SING N N 69 C8J N6 H31 SING N N 70 C8J N6 H32 SING N N 71 C8J "O2'" H33 SING N N 72 C8J "O3'" H34 SING N N 73 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C8J SMILES ACDLabs 12.01 "c12ncnc(c1ncn2C3OC(C(C3O)O)CN(CCCC(N)C(O)=O)CCc4cccc(C(N)=O)c4)N" C8J InChI InChI 1.03 "InChI=1S/C24H32N8O6/c25-15(24(36)37)5-2-7-31(8-6-13-3-1-4-14(9-13)21(27)35)10-16-18(33)19(34)23(38-16)32-12-30-17-20(26)28-11-29-22(17)32/h1,3-4,9,11-12,15-16,18-19,23,33-34H,2,5-8,10,25H2,(H2,27,35)(H,36,37)(H2,26,28,29)/t15-,16-,18-,19-,23-/m1/s1" C8J InChIKey InChI 1.03 HSCPXDPGPWYINM-AXKRAVOISA-N C8J SMILES_CANONICAL CACTVS 3.385 "N[C@H](CCCN(CCc1cccc(c1)C(N)=O)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(O)=O" C8J SMILES CACTVS 3.385 "N[CH](CCCN(CCc1cccc(c1)C(N)=O)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(O)=O" C8J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)C(=O)N)CCN(CCC[C@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" C8J SMILES "OpenEye OEToolkits" 2.0.6 "c1cc(cc(c1)C(=O)N)CCN(CCCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C8J "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-amino-5-({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}[2-(3-carbamoylphenyl)ethyl]amino)pentanoic acid (non-preferred name)" C8J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{R})-5-[2-(3-aminocarbonylphenyl)ethyl-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]amino]-2-azanyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C8J "Create component" 2017-09-19 RCSB C8J "Initial release" 2018-01-31 RCSB #