data_C8R # _chem_comp.id C8R _chem_comp.name ;8-Amino-N1-Cyclic Inosine 5'-Diphosphoribose ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H21 N5 O14 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-10-12 _chem_comp.pdbx_modified_date 2012-10-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 557.300 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C8R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3U4H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C8R N1 N1 N 0 1 N N R -1.218 0.844 -0.878 -1.218 0.844 -0.878 N1 C8R 1 C8R C2 C2 C 0 1 N N N -2.480 0.838 -1.342 -2.480 0.838 -1.342 C2 C8R 2 C8R N3 N3 N 0 1 N N N -2.957 -0.060 -2.222 -2.957 -0.060 -2.222 N3 C8R 3 C8R C4 C4 C 0 1 Y N N -2.163 -1.048 -2.715 -2.163 -1.048 -2.715 C4 C8R 4 C8R C5 C5 C 0 1 Y N N -0.763 -1.146 -2.275 -0.763 -1.146 -2.275 C5 C8R 5 C8R C6 C6 C 0 1 N N N -0.303 -0.129 -1.321 -0.303 -0.129 -1.321 C6 C8R 6 C8R O6 O6 O 0 1 N N N 0.958 -0.191 -0.875 0.958 -0.191 -0.875 O6 C8R 7 C8R N7 N7 N 0 1 Y N N -0.187 -2.197 -2.892 -0.187 -2.197 -2.892 N7 C8R 8 C8R C8 C8 C 0 1 Y N N -1.174 -2.692 -3.646 -1.174 -2.692 -3.646 C8 C8R 9 C8R N8 N8 N 0 1 N N N -0.973 -3.769 -4.436 -0.973 -3.769 -4.436 N8 C8R 10 C8R N9 N9 N 0 1 Y N N -2.349 -2.059 -3.559 -2.349 -2.059 -3.559 N9 C8R 11 C8R PA PA P 0 1 N N N -4.327 2.998 -6.217 -4.327 2.998 -6.217 PA C8R 12 C8R PB PB P 0 1 N N N -4.140 4.140 -3.533 -4.140 4.140 -3.533 PB C8R 13 C8R "C1'" "C1'" C 0 1 N N R -3.581 -2.336 -4.302 -3.581 -2.336 -4.302 "C1'" C8R 14 C8R O1A O1A O 0 1 N N N -5.768 3.390 -6.420 -5.768 3.390 -6.420 O1A C8R 15 C8R O1B O1B O 0 1 N N N -5.565 3.630 -3.339 -5.565 3.630 -3.339 O1B C8R 16 C8R C1D C1D C 0 1 N N R -0.798 1.912 0.049 -0.798 1.912 0.049 C1D C8R 17 C8R "C2'" "C2'" C 0 1 N N R -4.821 -1.944 -3.525 -4.821 -1.944 -3.525 "C2'" C8R 18 C8R "O2'" "O2'" O 0 1 N N N -5.746 -3.013 -3.707 -5.746 -3.013 -3.707 "O2'" C8R 19 C8R O2A O2A O 0 1 N N N -3.412 3.106 -7.401 -3.412 3.106 -7.401 O2A C8R 20 C8R O2B O2B O 0 1 N N N -3.773 5.578 -3.230 -3.773 5.578 -3.230 O2B C8R 21 C8R C2D C2D C 0 1 N N R 0.554 2.412 -0.453 0.554 2.412 -0.453 C2D C8R 22 C8R O2D O2D O 0 1 N N N 1.431 2.713 0.639 1.431 2.713 0.639 O2D C8R 23 C8R "C3'" "C3'" C 0 1 N N S -5.361 -0.708 -4.219 -5.361 -0.708 -4.219 "C3'" C8R 24 C8R "O3'" "O3'" O 0 1 N N N -6.786 -0.716 -4.260 -6.786 -0.716 -4.260 "O3'" C8R 25 C8R O3A O3A O 0 1 N N N -3.634 3.915 -5.059 -3.634 3.915 -5.059 O3A C8R 26 C8R C3D C3D C 0 1 N N S 0.305 3.668 -1.280 0.305 3.668 -1.280 C3D C8R 27 C8R O3D O3D O 0 1 N N N 0.900 4.834 -0.689 0.900 4.834 -0.689 O3D C8R 28 C8R "C4'" "C4'" C 0 1 N N R -4.789 -0.847 -5.614 -4.789 -0.847 -5.614 "C4'" C8R 29 C8R "O4'" "O4'" O 0 1 N N N -3.497 -1.426 -5.406 -3.497 -1.426 -5.406 "O4'" C8R 30 C8R C4D C4D C 0 1 N N R -1.206 3.830 -1.298 -1.206 3.830 -1.298 C4D C8R 31 C8R O4D O4D O 0 1 N N N -1.687 3.005 -0.221 -1.687 3.005 -0.221 O4D C8R 32 C8R "C5'" "C5'" C 0 1 N N N -4.740 0.462 -6.392 -4.740 0.462 -6.392 "C5'" C8R 33 C8R "O5'" "O5'" O 0 1 N N N -4.232 1.529 -5.600 -4.232 1.529 -5.600 "O5'" C8R 34 C8R C5D C5D C 0 1 N N N -1.731 3.433 -2.683 -1.731 3.433 -2.683 C5D C8R 35 C8R O5D O5D O 0 1 N N N -3.143 3.167 -2.715 -3.143 3.167 -2.715 O5D C8R 36 C8R H1 H1 H 0 1 N N N -3.153 1.603 -0.985 -3.154 1.603 -0.985 H1 C8R 37 C8R H2 H2 H 0 1 N N N -0.027 -4.080 -4.342 -0.027 -4.080 -4.342 H2 C8R 38 C8R H3 H3 H 0 1 N N N -1.594 -4.504 -4.162 -1.594 -4.504 -4.162 H3 C8R 39 C8R H4 H4 H 0 1 N N N -3.634 -3.385 -4.628 -3.634 -3.385 -4.628 H4 C8R 40 C8R H5 H5 H 0 1 N N N -5.898 3.665 -7.320 -5.898 3.665 -7.320 H5 C8R 41 C8R H6 H6 H 0 1 N N N -0.772 1.597 1.103 -0.772 1.597 1.103 H6 C8R 42 C8R H7 H7 H 0 1 N N N -4.592 -1.747 -2.467 -4.592 -1.747 -2.467 H7 C8R 43 C8R H8 H8 H 0 1 N N N -6.549 -2.820 -3.238 -6.549 -2.820 -3.238 H8 C8R 44 C8R H9 H9 H 0 1 N N N -4.543 6.044 -2.925 -4.543 6.044 -2.925 H9 C8R 45 C8R H10 H10 H 0 1 N N N 1.002 1.642 -1.099 1.002 1.642 -1.099 H10 C8R 46 C8R H11 H11 H 0 1 N N N 1.582 1.927 1.150 1.582 1.927 1.150 H11 C8R 47 C8R H12 H12 H 0 1 N N N -4.974 0.201 -3.736 -4.974 0.201 -3.736 H12 C8R 48 C8R H13 H13 H 0 1 N N N -7.129 -0.628 -3.378 -7.129 -0.628 -3.378 H13 C8R 49 C8R H14 H14 H 0 1 N N N 0.674 3.515 -2.305 0.674 3.515 -2.305 H14 C8R 50 C8R H15 H15 H 0 1 N N N 1.845 4.736 -0.676 1.845 4.736 -0.676 H15 C8R 51 C8R H16 H16 H 0 1 N N N -5.418 -1.554 -6.175 -5.418 -1.554 -6.174 H16 C8R 52 C8R H17 H17 H 0 1 N N N -1.457 4.884 -1.110 -1.457 4.884 -1.110 H17 C8R 53 C8R H18 H18 H 0 1 N N N -4.091 0.330 -7.270 -4.091 0.330 -7.270 H18 C8R 54 C8R H19 H19 H 0 1 N N N -5.757 0.718 -6.723 -5.757 0.718 -6.723 H19 C8R 55 C8R H20 H20 H 0 1 N N N -1.200 2.526 -3.008 -1.200 2.526 -3.008 H20 C8R 56 C8R H21 H21 H 0 1 N N N -1.517 4.254 -3.383 -1.517 4.254 -3.383 H21 C8R 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C8R O2A PA DOUB N N 1 C8R O1A PA SING N N 2 C8R "C5'" "C4'" SING N N 3 C8R "C5'" "O5'" SING N N 4 C8R PA "O5'" SING N N 5 C8R PA O3A SING N N 6 C8R "C4'" "O4'" SING N N 7 C8R "C4'" "C3'" SING N N 8 C8R "O4'" "C1'" SING N N 9 C8R O3A PB SING N N 10 C8R N8 C8 SING N N 11 C8R "C1'" N9 SING N N 12 C8R "C1'" "C2'" SING N N 13 C8R "O3'" "C3'" SING N N 14 C8R "C3'" "C2'" SING N N 15 C8R "O2'" "C2'" SING N N 16 C8R C8 N9 SING Y N 17 C8R C8 N7 DOUB Y N 18 C8R N9 C4 SING Y N 19 C8R PB O1B DOUB N N 20 C8R PB O2B SING N N 21 C8R PB O5D SING N N 22 C8R N7 C5 SING Y N 23 C8R O5D C5D SING N N 24 C8R C4 C5 DOUB Y N 25 C8R C4 N3 SING N N 26 C8R C5D C4D SING N N 27 C8R C5 C6 SING N N 28 C8R N3 C2 DOUB N N 29 C8R C2 N1 SING N N 30 C8R C6 N1 SING N N 31 C8R C6 O6 DOUB N N 32 C8R C4D C3D SING N N 33 C8R C4D O4D SING N N 34 C8R C3D O3D SING N N 35 C8R C3D C2D SING N N 36 C8R N1 C1D SING N N 37 C8R C2D C1D SING N N 38 C8R C2D O2D SING N N 39 C8R O4D C1D SING N N 40 C8R C2 H1 SING N N 41 C8R N8 H2 SING N N 42 C8R N8 H3 SING N N 43 C8R "C1'" H4 SING N N 44 C8R O1A H5 SING N N 45 C8R C1D H6 SING N N 46 C8R "C2'" H7 SING N N 47 C8R "O2'" H8 SING N N 48 C8R O2B H9 SING N N 49 C8R C2D H10 SING N N 50 C8R O2D H11 SING N N 51 C8R "C3'" H12 SING N N 52 C8R "O3'" H13 SING N N 53 C8R C3D H14 SING N N 54 C8R O3D H15 SING N N 55 C8R "C4'" H16 SING N N 56 C8R C4D H17 SING N N 57 C8R "C5'" H18 SING N N 58 C8R "C5'" H19 SING N N 59 C8R C5D H20 SING N N 60 C8R C5D H21 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C8R SMILES ACDLabs 12.01 "O=C2N3C=Nc1n(c(nc12)N)C5OC(COP(=O)(O)OP(=O)(O)OCC4OC3C(O)C4O)C(O)C5O" C8R InChI InChI 1.03 "InChI=1S/C15H21N5O14P2/c16-15-18-6-11-17-3-19(12(6)25)13-9(23)7(21)4(32-13)1-30-35(26,27)34-36(28,29)31-2-5-8(22)10(24)14(33-5)20(11)15/h3-5,7-10,13-14,21-24H,1-2H2,(H2,16,18)(H,26,27)(H,28,29)/t4-,5-,7-,8-,9-,10-,13-,14-/m1/s1" C8R InChIKey InChI 1.03 RNYBVHDVCKIICB-AIKIOGRUSA-N C8R SMILES_CANONICAL CACTVS 3.370 "Nc1nc2C(=O)[N@]3C=Nc2n1[C@@H]4O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]5O[C@@H]3[C@H](O)[C@@H]5O)[C@@H](O)[C@H]4O" C8R SMILES CACTVS 3.370 "Nc1nc2C(=O)[N]3C=Nc2n1[CH]4O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]5O[CH]3[CH](O)[CH]5O)[CH](O)[CH]4O" C8R SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C1[C@@H]2[C@H]([C@H]([C@@H](O2)n3c4c(nc3N)C(=O)N(C=N4)[C@H]5[C@@H]([C@@H]([C@H](O5)COP(=O)(OP(=O)(O1)O)O)O)O)O)O" C8R SMILES "OpenEye OEToolkits" 1.7.6 "C1C2C(C(C(O2)n3c4c(nc3N)C(=O)N(C=N4)C5C(C(C(O5)COP(=O)(OP(=O)(O1)O)O)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C8R "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4S,5R,8R,10R,13R,14S,15R,16R)-18-amino-3,4,8,10,14,15-hexahydroxy-7,9,11,25,26-pentaoxa-1,17,19,22-tetraaza-8,10-diphosphapentacyclo[18.3.1.1~2,5~.1~13,16~.0~17,21~]hexacosa-18,20,22-trien-24-one 8,10-dioxide (non-preferred name)" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C8R "Create component" 2011-10-12 PDBJ C8R "Modify model coordinates code" 2011-10-13 PDBJ C8R "Modify atom id" 2011-10-13 PDBJ C8R "Initial release" 2012-10-05 RCSB #