data_C8Y # _chem_comp.id C8Y _chem_comp.name "(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carbonitrile" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H11 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "open form - WCK 4234" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 249.244 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C8Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6B1H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C8Y OAE O1 O 0 1 N N N N N N 9.174 -2.963 1.109 3.560 -1.209 -0.526 OAE C8Y 1 C8Y SAP S1 S 0 1 N N N N N N 9.300 -1.679 0.504 3.299 -0.064 0.273 SAP C8Y 2 C8Y OAC O2 O 0 1 N N N N N N 8.201 -1.432 -0.316 3.710 0.048 1.629 OAC C8Y 3 C8Y OAD O3 O 0 1 N N N N N N 9.247 -0.549 1.452 3.912 1.120 -0.461 OAD C8Y 4 C8Y OAL O4 O 0 1 N N N N N N 10.684 -1.643 -0.165 1.790 0.133 0.264 OAL C8Y 5 C8Y NAK N1 N 0 1 N N N N N N 10.927 -2.605 -1.204 1.162 -0.144 -1.028 NAK C8Y 6 C8Y CAN C1 C 0 1 N N R N N N 11.527 -2.069 -2.476 -0.290 0.066 -0.964 CAN C8Y 7 C8Y CAI C2 C 0 1 N N N N N N 12.713 -1.108 -2.214 -0.580 1.518 -0.579 CAI C8Y 8 C8Y CAH C3 C 0 1 N N N N N N 12.410 0.416 -2.037 -2.093 1.747 -0.544 CAH C8Y 9 C8Y CAM C4 C 0 1 N N S N N N 11.476 0.894 -3.102 -2.718 0.832 0.515 CAM C8Y 10 C8Y CAF C5 C 0 1 N N N N N N 12.131 0.865 -4.400 -4.185 0.951 0.465 CAF C8Y 11 C8Y NAA N2 N 0 1 N N N N N N 12.630 0.839 -5.398 -5.316 1.043 0.427 NAA C8Y 12 C8Y NAO N3 N 0 1 N N N N N N 10.335 -0.026 -3.159 -2.324 -0.555 0.235 NAO C8Y 13 C8Y CAG C6 C 0 1 N N N N N N 9.090 0.475 -2.977 -3.254 -1.522 0.112 CAG C8Y 14 C8Y OAB O5 O 0 1 N N N N N N 8.800 1.459 -2.313 -2.924 -2.644 -0.209 OAB C8Y 15 C8Y CAJ C7 C 0 1 N N N N N N 10.539 -1.474 -3.401 -0.895 -0.868 0.090 CAJ C8Y 16 C8Y H1 H1 H 0 1 N N N N N N 10.053 -3.032 -1.435 1.379 -1.078 -1.343 H1 C8Y 17 C8Y H2 H2 H 0 1 N N N N N N 11.958 -2.936 -2.998 -0.733 -0.148 -1.936 H2 C8Y 18 C8Y H3 H3 H 0 1 N N N N N N 13.211 -1.449 -1.295 -0.158 1.725 0.405 H3 C8Y 19 C8Y H4 H4 H 0 1 N N N N N N 13.405 -1.206 -3.064 -0.130 2.185 -1.314 H4 C8Y 20 C8Y H5 H5 H 0 1 N N N N N N 13.351 0.982 -2.101 -2.298 2.787 -0.293 H5 C8Y 21 C8Y H6 H6 H 0 1 N N N N N N 11.950 0.581 -1.052 -2.519 1.517 -1.520 H6 C8Y 22 C8Y H7 H7 H 0 1 N N N N N N 11.132 1.912 -2.868 -2.362 1.121 1.504 H7 C8Y 23 C8Y H8 H8 H 0 1 N Y N N N N 8.278 -0.044 -3.464 -4.294 -1.298 0.301 H8 C8Y 24 C8Y H9 H9 H 0 1 N N N N N N 9.577 -1.992 -3.271 -0.778 -1.903 -0.229 H9 C8Y 25 C8Y H10 H10 H 0 1 N N N N N N 10.894 -1.613 -4.433 -0.390 -0.717 1.044 H10 C8Y 26 C8Y H11 H11 H 0 1 N N N N N N 8.505 0.006 1.242 4.878 1.094 -0.512 H11 C8Y 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C8Y NAA CAF TRIP N N 1 C8Y CAF CAM SING N N 2 C8Y CAJ NAO SING N N 3 C8Y CAJ CAN SING N N 4 C8Y NAO CAM SING N N 5 C8Y NAO CAG SING N N 6 C8Y CAM CAH SING N N 7 C8Y CAG OAB DOUB N N 8 C8Y CAN CAI SING N N 9 C8Y CAN NAK SING N N 10 C8Y CAI CAH SING N N 11 C8Y NAK OAL SING N N 12 C8Y OAC SAP DOUB N N 13 C8Y OAL SAP SING N N 14 C8Y SAP OAE DOUB N N 15 C8Y SAP OAD SING N N 16 C8Y NAK H1 SING N N 17 C8Y CAN H2 SING N N 18 C8Y CAI H3 SING N N 19 C8Y CAI H4 SING N N 20 C8Y CAH H5 SING N N 21 C8Y CAH H6 SING N N 22 C8Y CAM H7 SING N N 23 C8Y CAG H8 SING N N 24 C8Y CAJ H9 SING N N 25 C8Y CAJ H10 SING N N 26 C8Y OAD H11 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C8Y SMILES ACDLabs 12.01 "O=S(O)(=O)ONC1CCC(C#N)N(C=O)C1" C8Y InChI InChI 1.03 "InChI=1S/C7H11N3O5S/c8-3-7-2-1-6(4-10(7)5-11)9-15-16(12,13)14/h5-7,9H,1-2,4H2,(H,12,13,14)/t6-,7+/m1/s1" C8Y InChIKey InChI 1.03 QMRJJHLCVKRXGQ-RQJHMYQMSA-N C8Y SMILES_CANONICAL CACTVS 3.385 "O[S](=O)(=O)ON[C@@H]1CC[C@@H](C#N)N(C1)C=O" C8Y SMILES CACTVS 3.385 "O[S](=O)(=O)ON[CH]1CC[CH](C#N)N(C1)C=O" C8Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1C[C@H](N(C[C@@H]1NOS(=O)(=O)O)C=O)C#N" C8Y SMILES "OpenEye OEToolkits" 2.0.6 "C1CC(N(CC1NOS(=O)(=O)O)C=O)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier C8Y "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carbonitrile" C8Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(3~{R},6~{S})-6-cyano-1-methanoyl-piperidin-3-yl]amino] hydrogen sulfate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C8Y "Create component" 2017-09-19 RCSB C8Y "Initial release" 2018-08-01 RCSB C8Y "Modify synonyms" 2021-03-01 PDBE C8Y "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id C8Y _pdbx_chem_comp_synonyms.name "open form - WCK 4234" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id C8Y _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAG _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #