data_C9X # _chem_comp.id C9X _chem_comp.name "2-[phenyl-(phenylmethyl)amino]ethyl (4~{R})-5-(5,5-dimethyl-2-oxidanylidene-1,3,2$l^{5}-dioxaphosphinan-2-yl)-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3-carboxylate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H38 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-23 _chem_comp.pdbx_modified_date 2019-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 631.655 _chem_comp.one_letter_code ? _chem_comp.three_letter_code C9X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6JUH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal C9X C12 C1 C 0 1 N N N -5.252 31.273 27.760 3.684 -2.497 -2.316 C12 C9X 1 C9X C36 C2 C 0 1 Y N N -9.442 33.056 23.295 -7.576 -1.972 -0.610 C36 C9X 2 C9X C35 C3 C 0 1 Y N N -8.205 33.755 23.228 -6.434 -1.515 0.022 C35 C9X 3 C9X C34 C4 C 0 1 Y N N -6.967 33.260 23.737 -6.103 -0.174 -0.034 C34 C9X 4 C9X C33 C5 C 0 1 N N N -5.604 34.201 23.626 -4.858 0.324 0.654 C33 C9X 5 C9X C31 C6 C 0 1 N N N -3.839 32.235 23.553 -3.415 1.403 -1.132 C31 C9X 6 C9X C30 C7 C 0 1 N N N -3.115 31.896 22.162 -2.553 2.401 -0.356 C30 C9X 7 C9X O28 O1 O 0 1 N N N -0.438 30.735 22.127 -2.231 0.958 1.802 O28 C9X 8 C9X C27 C8 C 0 1 N N N -1.392 30.192 22.660 -1.238 1.082 1.109 C27 C9X 9 C9X O26 O2 O -1 1 N N N -4.285 23.341 23.802 1.810 4.381 -2.742 O26 C9X 10 C9X O25 O3 O 0 1 N N N -2.566 24.110 24.706 2.790 5.919 -1.681 O25 C9X 11 C9X C23 C9 C 0 1 Y N N -3.216 26.771 24.322 1.758 2.694 -0.528 C23 C9X 12 C9X C22 C10 C 0 1 Y N N -4.032 25.774 23.851 2.311 3.960 -0.495 C22 C9X 13 C9X C21 C11 C 0 1 Y N N -5.187 26.142 23.093 2.871 4.439 0.675 C21 C9X 14 C9X C20 C12 C 0 1 Y N N -5.473 27.535 22.853 2.878 3.652 1.811 C20 C9X 15 C9X C19 C13 C 0 1 Y N N -4.637 28.580 23.326 2.324 2.385 1.778 C19 C9X 16 C9X C18 C14 C 0 1 Y N N -3.514 28.183 24.074 1.759 1.908 0.610 C18 C9X 17 C9X C16 C15 C 0 1 N N N -3.039 31.659 29.053 5.293 -2.849 -0.413 C16 C9X 18 C9X C15 C16 C 0 1 N N N -4.977 33.286 29.318 5.182 -4.490 -2.288 C15 C9X 19 C9X C13 C17 C 0 1 N N N -4.225 32.364 28.302 4.366 -3.531 -1.419 C13 C9X 20 C9X C01 C18 C 0 1 N N N -0.983 27.416 28.125 3.268 -2.035 2.518 C01 C9X 21 C9X C02 C19 C 0 1 N N N -1.088 27.774 26.584 2.194 -1.038 2.165 C02 C9X 22 C9X N03 N1 N 0 1 N N N -0.398 27.348 25.530 1.215 -0.728 3.099 N03 C9X 23 C9X C04 C20 C 0 1 N N N -0.214 28.257 24.278 0.054 -0.129 2.701 C04 C9X 24 C9X C05 C21 C 0 1 N N N 1.143 28.152 23.532 -1.148 -0.149 3.609 C05 C9X 25 C9X C06 C22 C 0 1 N N N -1.231 29.147 23.865 -0.023 0.479 1.502 C06 C9X 26 C9X C07 C23 C 0 1 N N R -2.524 29.145 24.716 1.157 0.528 0.573 C07 C9X 27 C9X C08 C24 C 0 1 N N N -2.417 28.541 26.256 2.201 -0.473 0.979 C08 C9X 28 C9X P09 P1 P 0 1 N N N -3.315 29.414 27.614 3.502 -0.919 -0.204 P09 C9X 29 C9X O10 O4 O 0 1 N N N -3.702 28.396 28.644 4.254 0.288 -0.614 O10 C9X 30 C9X O11 O5 O 0 1 N N N -4.579 30.332 26.983 2.852 -1.647 -1.504 O11 C9X 31 C9X C14 C25 C 0 1 N N N -3.663 33.236 27.134 3.297 -4.324 -0.663 C14 C9X 32 C9X O17 O6 O 0 1 N N N -2.433 30.634 28.257 4.509 -2.011 0.455 O17 C9X 33 C9X N24 N2 N 1 1 N N N -3.625 24.293 24.137 2.303 4.803 -1.711 N24 C9X 34 C9X O29 O7 O 0 1 N N N -2.620 30.556 22.129 -1.298 1.797 -0.034 O29 C9X 35 C9X N32 N3 N 0 1 N N N -4.126 33.672 23.826 -3.727 0.257 -0.274 N32 C9X 36 C9X C37 C26 C 0 1 Y N N -9.485 31.813 23.889 -8.386 -1.087 -1.298 C37 C9X 37 C9X C38 C27 C 0 1 Y N N -8.287 31.290 24.419 -8.057 0.254 -1.349 C38 C9X 38 C9X C39 C28 C 0 1 Y N N -7.066 32.004 24.338 -6.913 0.710 -0.722 C39 C9X 39 C9X C40 C29 C 0 1 Y N N -2.897 34.630 24.176 -2.945 -0.899 -0.341 C40 C9X 40 C9X C41 C30 C 0 1 Y N N -3.038 35.948 24.742 -1.891 -0.975 -1.242 C41 C9X 41 C9X C42 C31 C 0 1 Y N N -1.908 36.816 24.971 -1.120 -2.119 -1.305 C42 C9X 42 C9X C43 C32 C 0 1 Y N N -0.578 36.427 24.683 -1.397 -3.188 -0.473 C43 C9X 43 C9X C44 C33 C 0 1 Y N N -0.373 35.145 24.149 -2.446 -3.116 0.425 C44 C9X 44 C9X C45 C34 C 0 1 Y N N -1.488 34.275 23.889 -3.218 -1.972 0.497 C45 C9X 45 C9X H1 H1 H 0 1 N N N -6.021 31.768 27.149 4.441 -1.894 -2.817 H1 C9X 46 C9X H2 H2 H 0 1 N N N -5.730 30.768 28.612 3.072 -3.006 -3.060 H2 C9X 47 C9X H3 H3 H 0 1 N N N -10.339 33.495 22.884 -7.833 -3.020 -0.570 H3 C9X 48 C9X H4 H4 H 0 1 N N N -8.202 34.728 22.759 -5.801 -2.205 0.559 H4 C9X 49 C9X H5 H5 H 0 1 N N N -5.627 34.636 22.616 -5.007 1.356 0.972 H5 C9X 50 C9X H6 H6 H 0 1 N N N -5.735 34.999 24.372 -4.651 -0.298 1.525 H6 C9X 51 C9X H7 H7 H 0 1 N N N -4.797 31.695 23.570 -4.341 1.887 -1.443 H7 C9X 52 C9X H8 H8 H 0 1 N N N -3.194 31.864 24.363 -2.871 1.060 -2.012 H8 C9X 53 C9X H9 H9 H 0 1 N N N -2.273 32.589 22.022 -2.383 3.287 -0.969 H9 C9X 54 C9X H10 H10 H 0 1 N N N -3.838 32.028 21.344 -3.065 2.687 0.562 H10 C9X 55 C9X H11 H11 H 0 1 N N N -2.334 26.509 24.888 1.321 2.320 -1.442 H11 C9X 56 C9X H12 H12 H 0 1 N N N -5.843 25.379 22.701 3.303 5.429 0.701 H12 C9X 57 C9X H13 H13 H 0 1 N N N -6.358 27.793 22.291 3.316 4.025 2.725 H13 C9X 58 C9X H14 H14 H 0 1 N N N -4.851 29.619 23.123 2.330 1.770 2.665 H14 C9X 59 C9X H15 H15 H 0 1 N N N -3.424 31.208 29.980 5.808 -3.606 0.179 H15 C9X 60 C9X H16 H16 H 0 1 N N N -2.277 32.413 29.301 6.025 -2.242 -0.945 H16 C9X 61 C9X H17 H17 H 0 1 N N N -5.375 32.676 30.143 5.938 -3.929 -2.837 H17 C9X 62 C9X H18 H18 H 0 1 N N N -4.279 34.035 29.720 5.670 -5.230 -1.653 H18 C9X 63 C9X H19 H19 H 0 1 N N N -5.806 33.796 28.806 4.521 -4.995 -2.992 H19 C9X 64 C9X H20 H20 H 0 1 N N N -1.739 27.985 28.686 3.109 -2.395 3.535 H20 C9X 65 C9X H21 H21 H 0 1 N N N -1.157 26.339 28.264 3.227 -2.875 1.824 H21 C9X 66 C9X H22 H22 H 0 1 N N N 0.020 27.676 28.494 4.245 -1.556 2.451 H22 C9X 67 C9X H24 H24 H 0 1 N N N 0.007 26.434 25.541 1.356 -0.936 4.036 H24 C9X 68 C9X H25 H25 H 0 1 N N N 1.776 27.400 24.026 -0.900 -0.680 4.528 H25 C9X 69 C9X H26 H26 H 0 1 N N N 0.965 27.853 22.488 -1.440 0.873 3.848 H26 C9X 70 C9X H27 H27 H 0 1 N N N 1.649 29.128 23.553 -1.974 -0.655 3.108 H27 C9X 71 C9X H28 H28 H 0 1 N N N -2.948 30.159 24.763 0.824 0.309 -0.442 H28 C9X 72 C9X H30 H30 H 0 1 N N N -2.958 33.979 27.536 2.647 -4.830 -1.377 H30 C9X 73 C9X H31 H31 H 0 1 N N N -3.142 32.590 26.412 3.779 -5.063 -0.023 H31 C9X 74 C9X H32 H32 H 0 1 N N N -4.493 33.753 26.631 2.705 -3.643 -0.051 H32 C9X 75 C9X H33 H33 H 0 1 N N N -10.408 31.256 23.947 -9.276 -1.445 -1.795 H33 C9X 76 C9X H34 H34 H 0 1 N N N -8.301 30.322 24.898 -8.690 0.945 -1.886 H34 C9X 77 C9X H35 H35 H 0 1 N N N -6.176 31.559 24.758 -6.654 1.758 -0.766 H35 C9X 78 C9X H36 H36 H 0 1 N N N -4.025 36.299 25.004 -1.674 -0.140 -1.892 H36 C9X 79 C9X H37 H37 H 0 1 N N N -2.084 37.801 25.378 -0.300 -2.179 -2.005 H37 C9X 80 C9X H38 H38 H 0 1 N N N 0.251 37.094 24.868 -0.793 -4.082 -0.525 H38 C9X 81 C9X H39 H39 H 0 1 N N N 0.630 34.809 23.932 -2.660 -3.953 1.073 H39 C9X 82 C9X H40 H40 H 0 1 N N N -1.286 33.305 23.459 -4.037 -1.916 1.199 H40 C9X 83 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal C9X O28 C27 DOUB N N 1 C9X O29 C30 SING N N 2 C9X O29 C27 SING N N 3 C9X C30 C31 SING N N 4 C9X C27 C06 SING N N 5 C9X C20 C21 DOUB Y N 6 C9X C20 C19 SING Y N 7 C9X C21 C22 SING Y N 8 C9X C35 C36 DOUB Y N 9 C9X C35 C34 SING Y N 10 C9X C36 C37 SING Y N 11 C9X C19 C18 DOUB Y N 12 C9X C05 C04 SING N N 13 C9X C31 N32 SING N N 14 C9X C33 C34 SING N N 15 C9X C33 N32 SING N N 16 C9X C34 C39 DOUB Y N 17 C9X O26 N24 SING N N 18 C9X N32 C40 SING N N 19 C9X C22 N24 SING N N 20 C9X C22 C23 DOUB Y N 21 C9X C06 C04 DOUB N N 22 C9X C06 C07 SING N N 23 C9X C37 C38 DOUB Y N 24 C9X C45 C44 DOUB Y N 25 C9X C45 C40 SING Y N 26 C9X C18 C23 SING Y N 27 C9X C18 C07 SING N N 28 C9X N24 O25 DOUB N N 29 C9X C44 C43 SING Y N 30 C9X C40 C41 DOUB Y N 31 C9X C04 N03 SING N N 32 C9X C39 C38 SING Y N 33 C9X C43 C42 DOUB Y N 34 C9X C07 C08 SING N N 35 C9X C41 C42 SING Y N 36 C9X N03 C02 SING N N 37 C9X C08 C02 DOUB N N 38 C9X C08 P09 SING N N 39 C9X C02 C01 SING N N 40 C9X O11 P09 SING N N 41 C9X O11 C12 SING N N 42 C9X C14 C13 SING N N 43 C9X P09 O17 SING N N 44 C9X P09 O10 DOUB N N 45 C9X C12 C13 SING N N 46 C9X O17 C16 SING N N 47 C9X C13 C16 SING N N 48 C9X C13 C15 SING N N 49 C9X C12 H1 SING N N 50 C9X C12 H2 SING N N 51 C9X C36 H3 SING N N 52 C9X C35 H4 SING N N 53 C9X C33 H5 SING N N 54 C9X C33 H6 SING N N 55 C9X C31 H7 SING N N 56 C9X C31 H8 SING N N 57 C9X C30 H9 SING N N 58 C9X C30 H10 SING N N 59 C9X C23 H11 SING N N 60 C9X C21 H12 SING N N 61 C9X C20 H13 SING N N 62 C9X C19 H14 SING N N 63 C9X C16 H15 SING N N 64 C9X C16 H16 SING N N 65 C9X C15 H17 SING N N 66 C9X C15 H18 SING N N 67 C9X C15 H19 SING N N 68 C9X C01 H20 SING N N 69 C9X C01 H21 SING N N 70 C9X C01 H22 SING N N 71 C9X N03 H24 SING N N 72 C9X C05 H25 SING N N 73 C9X C05 H26 SING N N 74 C9X C05 H27 SING N N 75 C9X C07 H28 SING N N 76 C9X C14 H30 SING N N 77 C9X C14 H31 SING N N 78 C9X C14 H32 SING N N 79 C9X C37 H33 SING N N 80 C9X C38 H34 SING N N 81 C9X C39 H35 SING N N 82 C9X C41 H36 SING N N 83 C9X C42 H37 SING N N 84 C9X C43 H38 SING N N 85 C9X C44 H39 SING N N 86 C9X C45 H40 SING N N 87 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor C9X InChI InChI 1.03 "InChI=1S/C34H38N3O7P/c1-24-30(33(38)42-19-18-36(28-15-9-6-10-16-28)21-26-12-7-5-8-13-26)31(27-14-11-17-29(20-27)37(39)40)32(25(2)35-24)45(41)43-22-34(3,4)23-44-45/h5-17,20,31,35H,18-19,21-23H2,1-4H3/t31-/m1/s1" C9X InChIKey InChI 1.03 NSVFSAJIGAJDMR-WJOKGBTCSA-N C9X SMILES_CANONICAL CACTVS 3.385 "CC1=C([C@@H](c2cccc(c2)[N+]([O-])=O)C(=C(C)N1)[P]3(=O)OCC(C)(C)CO3)C(=O)OCCN(Cc4ccccc4)c5ccccc5" C9X SMILES CACTVS 3.385 "CC1=C([CH](c2cccc(c2)[N+]([O-])=O)C(=C(C)N1)[P]3(=O)OCC(C)(C)CO3)C(=O)OCCN(Cc4ccccc4)c5ccccc5" C9X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1=C([C@H](C(=C(N1)C)P2(=O)OCC(CO2)(C)C)c3cccc(c3)[N+](=O)[O-])C(=O)OCCN(Cc4ccccc4)c5ccccc5" C9X SMILES "OpenEye OEToolkits" 2.0.6 "CC1=C(C(C(=C(N1)C)P2(=O)OCC(CO2)(C)C)c3cccc(c3)[N+](=O)[O-])C(=O)OCCN(Cc4ccccc4)c5ccccc5" # _pdbx_chem_comp_identifier.comp_id C9X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "2-[phenyl-(phenylmethyl)amino]ethyl (4~{R})-5-(5,5-dimethyl-2-oxidanylidene-1,3,2$l^{5}-dioxaphosphinan-2-yl)-2,6-dimethyl-4-(3-nitrophenyl)-1,4-dihydropyridine-3-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site C9X "Create component" 2019-04-23 PDBJ C9X "Initial release" 2019-11-06 RCSB ##