data_CAP # _chem_comp.id CAP _chem_comp.name 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE _chem_comp.type SACCHARIDE _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H14 O13 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 356.115 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CAP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CAP C1 C1 C 0 1 N N N 5.085 2.200 30.258 -0.397 -0.118 -2.323 C1 CAP 1 CAP C2 C2 C 0 1 N N R 5.331 2.960 31.548 0.375 0.374 -1.097 C2 CAP 2 CAP C3 C3 C 0 1 N N R 3.964 3.140 32.318 -0.234 -0.232 0.167 C3 CAP 3 CAP C4 C4 C 0 1 N N R 3.320 1.862 32.908 0.441 0.371 1.399 C4 CAP 4 CAP C5 C5 C 0 1 N N N 2.580 2.047 34.249 -0.261 -0.127 2.663 C5 CAP 5 CAP C C C 0 1 N N N 6.424 2.278 32.437 1.818 -0.046 -1.211 C CAP 6 CAP O1 O1 O 0 1 N N N 6.229 2.244 29.415 0.172 0.448 -3.504 O1 CAP 7 CAP O2 O2 O 0 1 N N N 5.794 4.230 31.064 0.298 1.799 -1.027 O2 CAP 8 CAP O3 O3 O 0 1 N N N 4.064 4.086 33.371 -1.634 0.051 0.204 O3 CAP 9 CAP O4 O4 O 0 1 N N N 2.375 1.437 31.958 1.814 -0.022 1.431 O4 CAP 10 CAP O5 O5 O 0 1 N N N 1.856 0.850 34.574 0.369 0.436 3.814 O5 CAP 11 CAP O6 O6 O 0 1 N N N 6.627 1.068 32.374 2.691 0.788 -1.229 O6 CAP 12 CAP O7 O7 O 0 1 N N N 7.123 2.967 33.188 2.133 -1.348 -1.291 O7 CAP 13 CAP P1 P1 P 0 1 N N N 6.131 1.428 28.039 -0.684 -0.109 -4.748 P1 CAP 14 CAP P2 P2 P 0 1 N N N 0.236 0.863 34.631 -0.417 -0.128 5.100 P2 CAP 15 CAP O1P O1P O 0 1 N N N 5.086 2.107 27.244 -2.098 0.302 -4.597 O1P CAP 16 CAP O2P O2P O 0 1 N N N 5.974 0.002 28.368 -0.094 0.492 -6.120 O2P CAP 17 CAP O3P O3P O 0 1 N N N 7.571 1.669 27.406 -0.594 -1.716 -4.784 O3P CAP 18 CAP O4P O4P O 0 1 N N N -0.254 1.567 33.431 -0.328 -1.605 5.123 O4P CAP 19 CAP O5P O5P O 0 1 N N N -0.187 -0.535 34.877 0.245 0.470 6.440 O5P CAP 20 CAP O6P O6P O 0 1 N N N -0.019 1.766 35.931 -1.962 0.315 5.022 O6P CAP 21 CAP H11 1H1 H 0 1 N N N 4.758 1.152 30.453 -0.338 -1.205 -2.376 H11 CAP 22 CAP H12 2H1 H 0 1 N N N 4.172 2.566 29.732 -1.440 0.186 -2.241 H12 CAP 23 CAP H3 H3 H 0 1 N N N 3.257 3.534 31.602 -0.083 -1.311 0.162 H3 CAP 24 CAP H4 H4 H 0 1 N N N 4.078 1.100 33.024 0.376 1.458 1.353 H4 CAP 25 CAP H51 1H5 H 0 1 N N N 3.269 2.355 35.069 -1.309 0.173 2.639 H51 CAP 26 CAP H52 2H5 H 0 1 N N N 1.921 2.946 34.244 -0.197 -1.214 2.710 H52 CAP 27 CAP HO2 HO2 H 0 1 N N N 6.720 4.347 31.282 -0.630 2.022 -0.878 HO2 CAP 28 CAP HO3 HO3 H 0 1 N N N 4.671 3.764 34.043 -1.724 1.014 0.208 HO3 CAP 29 CAP HO4 HO4 H 0 1 N N N 1.787 2.163 31.737 1.826 -0.988 1.472 HO4 CAP 30 CAP HO7 HO7 H 0 1 N N N 7.786 2.553 33.727 3.059 -1.618 -1.364 HO7 CAP 31 CAP HOP2 2HOP H 0 0 N N N 5.915 -0.481 27.552 -0.634 0.134 -6.837 HOP2 CAP 32 CAP HOP3 3HOP H 0 0 N N N 7.512 1.185 26.590 0.340 -1.941 -4.883 HOP3 CAP 33 CAP HOP5 5HOP H 0 0 N N N -1.136 -0.527 34.910 -0.254 0.108 7.185 HOP5 CAP 34 CAP HOP6 6HOP H 0 0 N N N -0.968 1.773 35.964 -1.976 1.281 5.009 HOP6 CAP 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CAP C1 C2 SING N N 1 CAP C1 O1 SING N N 2 CAP C1 H11 SING N N 3 CAP C1 H12 SING N N 4 CAP C2 C3 SING N N 5 CAP C2 C SING N N 6 CAP C2 O2 SING N N 7 CAP C3 C4 SING N N 8 CAP C3 O3 SING N N 9 CAP C3 H3 SING N N 10 CAP C4 C5 SING N N 11 CAP C4 O4 SING N N 12 CAP C4 H4 SING N N 13 CAP C5 O5 SING N N 14 CAP C5 H51 SING N N 15 CAP C5 H52 SING N N 16 CAP C O6 DOUB N N 17 CAP C O7 SING N N 18 CAP O1 P1 SING N N 19 CAP O2 HO2 SING N N 20 CAP O3 HO3 SING N N 21 CAP O4 HO4 SING N N 22 CAP O5 P2 SING N N 23 CAP O7 HO7 SING N N 24 CAP P1 O1P DOUB N N 25 CAP P1 O2P SING N N 26 CAP P1 O3P SING N N 27 CAP P2 O4P DOUB N N 28 CAP P2 O5P SING N N 29 CAP P2 O6P SING N N 30 CAP O2P HOP2 SING N N 31 CAP O3P HOP3 SING N N 32 CAP O5P HOP5 SING N N 33 CAP O6P HOP6 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CAP SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(O)(C(=O)O)COP(=O)(O)O" CAP SMILES_CANONICAL CACTVS 3.341 "O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@](O)(CO[P](O)(O)=O)C(O)=O" CAP SMILES CACTVS 3.341 "O[CH](CO[P](O)(O)=O)[CH](O)[C](O)(CO[P](O)(O)=O)C(O)=O" CAP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@H]([C@](COP(=O)(O)O)(C(=O)O)O)O)O)OP(=O)(O)O" CAP SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(COP(=O)(O)O)(C(=O)O)O)O)O)OP(=O)(O)O" CAP InChI InChI 1.03 "InChI=1S/C6H14O13P2/c7-3(1-18-20(12,13)14)4(8)6(11,5(9)10)2-19-21(15,16)17/h3-4,7-8,11H,1-2H2,(H,9,10)(H2,12,13,14)(H2,15,16,17)/t3-,4-,6-/m1/s1" CAP InChIKey InChI 1.03 ITHCSGCUQDMYAI-ZMIZWQJLSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CAP "SYSTEMATIC NAME" ACDLabs 10.04 "5-O-phosphono-2-C-[(phosphonooxy)methyl]-D-ribonic acid" CAP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4R)-2,3,4-trihydroxy-5-phosphonooxy-2-(phosphonooxymethyl)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CAP "Create component" 1999-07-08 RCSB CAP "Modify descriptor" 2011-06-04 RCSB #