data_CAR # _chem_comp.id CAR _chem_comp.name ;CYTOSINE ARABINOSE-5'-PHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.197 _chem_comp.one_letter_code C _chem_comp.three_letter_code CAR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1HO6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CAR P P P 0 1 N N N 4.477 9.819 -2.280 0.959 -0.042 -4.166 P CAR 1 CAR OP1 O1P O 0 1 N N N 5.348 11.014 -2.279 1.563 1.267 -3.836 OP1 CAR 2 CAR OP2 O2P O 0 1 N N N 3.662 9.496 -3.473 2.078 -1.001 -4.815 OP2 CAR 3 CAR OP3 O3P O 0 1 N Y N 3.495 9.905 -1.004 -0.241 0.169 -5.217 OP3 CAR 4 CAR "O5'" O5* O 0 1 N N N 5.379 8.528 -1.931 0.383 -0.721 -2.824 "O5'" CAR 5 CAR "C5'" C5* C 0 1 N N N 6.389 8.584 -0.913 -0.599 0.172 -2.298 "C5'" CAR 6 CAR "C4'" C4* C 0 1 N N R 7.021 7.215 -0.679 -1.189 -0.415 -1.015 "C4'" CAR 7 CAR "O4'" O4* O 0 1 N N N 6.072 6.268 -0.164 -0.158 -0.577 -0.016 "O4'" CAR 8 CAR "C3'" C3* C 0 1 N N S 7.567 6.629 -1.975 -2.199 0.568 -0.384 "C3'" CAR 9 CAR "O3'" O3* O 0 1 N N N 8.990 6.806 -2.069 -3.536 0.208 -0.738 "O3'" CAR 10 CAR "C2'" C2* C 0 1 N N S 7.190 5.170 -1.933 -1.979 0.409 1.138 "C2'" CAR 11 CAR "O2'" O2* O 0 1 N N N 6.289 4.853 -3.007 -1.555 1.646 1.715 "O2'" CAR 12 CAR "C1'" C1* C 0 1 N N R 6.519 4.973 -0.579 -0.859 -0.649 1.244 "C1'" CAR 13 CAR N1 N1 N 0 1 N N N 5.402 4.003 -0.659 0.045 -0.325 2.350 N1 CAR 14 CAR C2 C2 C 0 1 N N N 5.640 2.709 -0.212 -0.205 -0.803 3.582 C2 CAR 15 CAR O2 O2 O 0 1 N N N 6.734 2.404 0.252 -1.188 -1.502 3.766 O2 CAR 16 CAR N3 N3 N 0 1 N N N 4.634 1.800 -0.299 0.600 -0.524 4.605 N3 CAR 17 CAR C4 C4 C 0 1 N N N 3.445 2.138 -0.799 1.675 0.234 4.434 C4 CAR 18 CAR N4 N4 N 0 1 N N N 2.493 1.213 -0.879 2.500 0.515 5.498 N4 CAR 19 CAR C5 C5 C 0 1 N N N 3.188 3.469 -1.258 1.963 0.754 3.155 C5 CAR 20 CAR C6 C6 C 0 1 N N N 4.190 4.365 -1.170 1.137 0.457 2.124 C6 CAR 21 CAR HOP2 2HOP H 0 0 N N N 3.102 8.728 -3.473 2.395 -0.559 -5.614 HOP2 CAR 22 CAR HOP3 3HOP H 0 0 N N N 2.935 9.137 -1.004 -0.606 -0.706 -5.405 HOP3 CAR 23 CAR "H5'" 1H5* H 0 1 N N N 5.942 8.934 0.018 -1.392 0.312 -3.032 "H5'" CAR 24 CAR "H5''" 2H5* H 0 0 N N N 7.165 9.286 -1.222 -0.134 1.134 -2.077 "H5''" CAR 25 CAR "H4'" H4* H 0 1 N N N 7.839 7.309 0.034 -1.670 -1.371 -1.223 "H4'" CAR 26 CAR "H3'" H3* H 0 1 N N N 7.066 7.101 -2.827 -1.984 1.590 -0.698 "H3'" CAR 27 CAR "HO3'" H3T H 0 0 N Y N 9.261 6.490 -2.935 -4.120 0.855 -0.318 "HO3'" CAR 28 CAR "H2'" H2* H 0 1 N N N 8.088 4.550 -1.995 -2.890 0.055 1.621 "H2'" CAR 29 CAR "HO2'" 2HO* H 0 0 N N N 5.540 5.451 -2.937 -2.267 2.283 1.563 "HO2'" CAR 30 CAR "H1'" H1* H 0 1 N N N 7.263 4.618 0.134 -1.287 -1.642 1.384 "H1'" CAR 31 CAR HN41 1HN4 H 0 0 N N N 2.676 0.269 -0.553 2.296 0.159 6.377 HN41 CAR 32 CAR HN42 2HN4 H 0 0 N N N 1.592 1.448 -1.267 3.287 1.067 5.368 HN42 CAR 33 CAR H5 H5 H 0 1 N N N 2.216 3.748 -1.665 2.835 1.373 2.999 H5 CAR 34 CAR H6 H6 H 0 1 N N N 4.031 5.389 -1.511 1.340 0.840 1.135 H6 CAR 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CAR P OP1 DOUB N N 1 CAR P OP2 SING N N 2 CAR P OP3 SING N N 3 CAR P "O5'" SING N N 4 CAR OP2 HOP2 SING N N 5 CAR OP3 HOP3 SING N N 6 CAR "O5'" "C5'" SING N N 7 CAR "C5'" "C4'" SING N N 8 CAR "C5'" "H5'" SING N N 9 CAR "C5'" "H5''" SING N N 10 CAR "C4'" "O4'" SING N N 11 CAR "C4'" "C3'" SING N N 12 CAR "C4'" "H4'" SING N N 13 CAR "O4'" "C1'" SING N N 14 CAR "C3'" "O3'" SING N N 15 CAR "C3'" "C2'" SING N N 16 CAR "C3'" "H3'" SING N N 17 CAR "O3'" "HO3'" SING N N 18 CAR "C2'" "O2'" SING N N 19 CAR "C2'" "C1'" SING N N 20 CAR "C2'" "H2'" SING N N 21 CAR "O2'" "HO2'" SING N N 22 CAR "C1'" N1 SING N N 23 CAR "C1'" "H1'" SING N N 24 CAR N1 C2 SING N N 25 CAR N1 C6 SING N N 26 CAR C2 O2 DOUB N N 27 CAR C2 N3 SING N N 28 CAR N3 C4 DOUB N N 29 CAR C4 N4 SING N N 30 CAR C4 C5 SING N N 31 CAR N4 HN41 SING N N 32 CAR N4 HN42 SING N N 33 CAR C5 C6 DOUB N N 34 CAR C5 H5 SING N N 35 CAR C6 H6 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CAR SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C2OC(C(O)C2O)COP(=O)(O)O" CAR SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2O" CAR SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" CAR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" CAR SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(O)O)O)O" CAR InChI InChI 1.03 "InChI=1S/C9H14N3O8P/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6-,7+,8-/m1/s1" CAR InChIKey InChI 1.03 IERHLVCPSMICTF-CCXZUQQUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CAR "SYSTEMATIC NAME" ACDLabs 10.04 "4-amino-1-(5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one" CAR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4S,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CAR "Create component" 1999-07-08 RCSB CAR "Modify linking type" 2011-06-04 RCSB CAR "Modify descriptor" 2011-06-04 RCSB #