data_CBB # _chem_comp.id CBB _chem_comp.name "1-(3-CARBAMIMIDOYL-BENZYL)-1H-INDOLE-2-CARBOXYLIC ACID 3-CARBAMIMIDOYL-BENZYLESTER" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H23 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3-carbamimidoylphenyl)methyl 1-[(3-carbamimidoylphenyl)methyl]indole-2-carboxylate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2002-05-15 _chem_comp.pdbx_modified_date 2021-10-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.482 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1LPK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CBB C1 C1 C 0 1 Y N N 3.821 9.875 26.113 -5.466 0.278 -1.193 C1 CBB 1 CBB C2 C2 C 0 1 Y N N 4.901 8.990 25.932 -4.096 0.168 -1.261 C2 CBB 2 CBB C3 C3 C 0 1 Y N N 5.331 8.698 24.620 -3.293 1.056 -0.549 C3 CBB 3 CBB C4 C4 C 0 1 Y N N 4.669 9.265 23.482 -3.897 2.059 0.233 C4 CBB 4 CBB C5 C5 C 0 1 Y N N 3.594 10.167 23.685 -5.295 2.151 0.285 C5 CBB 5 CBB C6 C6 C 0 1 Y N N 3.176 10.478 25.002 -6.060 1.273 -0.425 C6 CBB 6 CBB N7 N1 N 0 1 Y N N 6.346 7.887 24.136 -1.932 1.196 -0.419 N7 CBB 7 CBB C8 C7 C 0 1 Y N N 6.338 7.891 22.788 -1.673 2.261 0.423 C8 CBB 8 CBB C9 C8 C 0 1 Y N N 5.305 8.746 22.331 -2.852 2.799 0.836 C9 CBB 9 CBB C10 C9 C 0 1 N N N 7.206 7.105 24.998 -0.922 0.356 -1.067 C10 CBB 10 CBB C11 C10 C 0 1 Y N N 8.522 7.750 25.298 -0.690 -0.880 -0.237 C11 CBB 11 CBB C14 C11 C 0 1 Y N N 9.117 8.870 24.647 0.196 -0.842 0.826 C14 CBB 12 CBB C15 C12 C 0 1 Y N N 10.385 9.333 25.091 0.414 -1.972 1.592 C15 CBB 13 CBB C16 C13 C 0 1 Y N N 11.044 8.682 26.163 -0.251 -3.146 1.301 C16 CBB 14 CBB C17 C14 C 0 1 Y N N 10.403 7.583 26.797 -1.145 -3.191 0.232 C17 CBB 15 CBB C18 C15 C 0 1 Y N N 9.159 7.130 26.349 -1.365 -2.046 -0.534 C18 CBB 16 CBB C19 C16 C 0 1 N N N 10.940 6.868 27.941 -1.861 -4.447 -0.086 C19 CBB 17 CBB N20 N2 N 0 1 N N N 12.233 6.933 28.254 -2.779 -4.458 -1.010 N20 CBB 18 CBB N21 N3 N 0 1 N N N 10.037 6.137 28.640 -1.558 -5.605 0.597 N21 CBB 19 CBB C31 C17 C 0 1 N N N 7.159 7.101 21.987 -0.338 2.732 0.814 C31 CBB 20 CBB O32 O1 O 0 1 N N N 6.710 6.924 20.762 0.762 2.149 0.296 O32 CBB 21 CBB C33 C18 C 0 1 N N N 7.481 6.123 19.821 2.047 2.607 0.792 C33 CBB 22 CBB C34 C19 C 0 1 Y N N 7.476 4.624 20.112 3.152 1.932 0.022 C34 CBB 23 CBB C37 C20 C 0 1 Y N N 6.762 4.010 21.176 3.706 2.557 -1.080 C37 CBB 24 CBB C38 C21 C 0 1 Y N N 6.853 2.603 21.375 4.722 1.944 -1.793 C38 CBB 25 CBB C39 C22 C 0 1 Y N N 7.650 1.816 20.509 5.188 0.704 -1.406 C39 CBB 26 CBB C40 C23 C 0 1 Y N N 8.351 2.433 19.437 4.634 0.069 -0.295 C40 CBB 27 CBB C41 C24 C 0 1 Y N N 8.253 3.827 19.244 3.614 0.694 0.422 C41 CBB 28 CBB C42 C25 C 0 1 N N N 9.241 1.716 18.526 5.129 -1.262 0.125 C42 CBB 29 CBB N43 N4 N 0 1 N N N 9.180 1.934 17.220 4.609 -1.853 1.162 N43 CBB 30 CBB N44 N5 N 0 1 N N N 10.175 0.905 19.014 6.140 -1.875 -0.583 N44 CBB 31 CBB O49 O2 O 0 1 N N N 8.175 6.592 22.353 -0.225 3.649 1.605 O49 CBB 32 CBB H1 H1 H 0 1 N N N 3.478 10.098 27.113 -6.086 -0.412 -1.746 H1 CBB 33 CBB H2 H2 H 0 1 N N N 5.392 8.542 26.783 -3.644 -0.606 -1.864 H2 CBB 34 CBB H3 H3 H 0 1 N N N 3.096 10.615 22.838 -5.765 2.918 0.883 H3 CBB 35 CBB H4 H4 H 0 1 N N N 2.366 11.174 25.161 -7.136 1.346 -0.384 H4 CBB 36 CBB H5 H5 H 0 1 N N N 5.052 8.960 21.303 -2.969 3.642 1.500 H5 CBB 37 CBB H6 H6 H 0 1 N N N 6.680 6.936 25.949 -1.271 0.067 -2.058 H6 CBB 38 CBB H7 H7 H 0 1 N N N 7.399 6.139 24.509 0.010 0.913 -1.158 H7 CBB 39 CBB H8 H8 H 0 1 N N N 8.611 9.360 23.828 0.719 0.074 1.057 H8 CBB 40 CBB H9 H9 H 0 1 N N N 10.847 10.183 24.610 1.107 -1.936 2.420 H9 CBB 41 CBB H10 H10 H 0 1 N N N 12.017 9.015 26.493 -0.079 -4.028 1.901 H10 CBB 42 CBB H11 H11 H 0 1 N N N 8.693 6.284 26.833 -2.059 -2.074 -1.361 H11 CBB 43 CBB H12 H12 H 0 1 N N N 12.452 6.382 29.059 -3.248 -5.281 -1.218 H12 CBB 44 CBB H13 H13 H 0 1 N N N 10.330 5.609 29.437 -0.874 -5.597 1.285 H13 CBB 45 CBB H14 H14 H 0 1 N N N 9.078 6.126 28.358 -2.027 -6.428 0.389 H14 CBB 46 CBB H15 H15 H 0 1 N N N 8.523 6.474 19.845 2.122 3.687 0.665 H15 CBB 47 CBB H16 H16 H 0 1 N N N 7.064 6.279 18.815 2.137 2.359 1.850 H16 CBB 48 CBB H17 H17 H 0 1 N N N 6.151 4.610 21.833 3.345 3.527 -1.387 H17 CBB 49 CBB H18 H18 H 0 1 N N N 6.314 2.136 22.186 5.150 2.437 -2.653 H18 CBB 50 CBB H19 H19 H 0 1 N N N 7.725 0.750 20.662 5.981 0.227 -1.963 H19 CBB 51 CBB H20 H20 H 0 1 N N N 8.779 4.290 18.422 3.181 0.207 1.283 H20 CBB 52 CBB H21 H21 H 0 1 N N N 8.483 2.612 16.986 3.898 -1.421 1.660 H21 CBB 53 CBB H22 H22 H 0 1 N N N 10.267 0.787 20.003 6.527 -1.435 -1.356 H22 CBB 54 CBB H23 H23 H 0 1 N N N 10.785 0.414 18.392 6.465 -2.747 -0.308 H23 CBB 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBB N43 C42 DOUB N N 1 CBB C42 N44 SING N N 2 CBB C42 C40 SING N N 3 CBB C41 C40 DOUB Y N 4 CBB C41 C34 SING Y N 5 CBB C40 C39 SING Y N 6 CBB C33 C34 SING N N 7 CBB C33 O32 SING N N 8 CBB C34 C37 DOUB Y N 9 CBB C39 C38 DOUB Y N 10 CBB O32 C31 SING N N 11 CBB C37 C38 SING Y N 12 CBB C31 O49 DOUB N N 13 CBB C31 C8 SING N N 14 CBB C9 C8 DOUB Y N 15 CBB C9 C4 SING Y N 16 CBB C8 N7 SING Y N 17 CBB C4 C5 SING Y N 18 CBB C4 C3 DOUB Y N 19 CBB C5 C6 DOUB Y N 20 CBB N7 C3 SING Y N 21 CBB N7 C10 SING N N 22 CBB C3 C2 SING Y N 23 CBB C14 C15 DOUB Y N 24 CBB C14 C11 SING Y N 25 CBB C10 C11 SING N N 26 CBB C6 C1 SING Y N 27 CBB C15 C16 SING Y N 28 CBB C11 C18 DOUB Y N 29 CBB C2 C1 DOUB Y N 30 CBB C16 C17 DOUB Y N 31 CBB C18 C17 SING Y N 32 CBB C17 C19 SING N N 33 CBB C19 N20 DOUB N N 34 CBB C19 N21 SING N N 35 CBB C1 H1 SING N N 36 CBB C2 H2 SING N N 37 CBB C5 H3 SING N N 38 CBB C6 H4 SING N N 39 CBB C9 H5 SING N N 40 CBB C10 H6 SING N N 41 CBB C10 H7 SING N N 42 CBB C14 H8 SING N N 43 CBB C15 H9 SING N N 44 CBB C16 H10 SING N N 45 CBB C18 H11 SING N N 46 CBB N20 H12 SING N N 47 CBB N21 H13 SING N N 48 CBB N21 H14 SING N N 49 CBB C33 H15 SING N N 50 CBB C33 H16 SING N N 51 CBB C37 H17 SING N N 52 CBB C38 H18 SING N N 53 CBB C39 H19 SING N N 54 CBB C41 H20 SING N N 55 CBB N43 H21 SING N N 56 CBB N44 H22 SING N N 57 CBB N44 H23 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CBB InChI InChI 1.03 "InChI=1S/C25H23N5O2/c26-23(27)19-8-3-5-16(11-19)14-30-21-10-2-1-7-18(21)13-22(30)25(31)32-15-17-6-4-9-20(12-17)24(28)29/h1-13H,14-15H2,(H3,26,27)(H3,28,29)" CBB InChIKey InChI 1.03 ZJZBBFMRHRUCQD-UHFFFAOYSA-N CBB SMILES_CANONICAL CACTVS 3.385 "NC(=N)c1cccc(COC(=O)c2cc3ccccc3n2Cc4cccc(c4)C(N)=N)c1" CBB SMILES CACTVS 3.385 "NC(=N)c1cccc(COC(=O)c2cc3ccccc3n2Cc4cccc(c4)C(N)=N)c1" CBB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/c1cccc(c1)Cn2c3ccccc3cc2C(=O)OCc4cccc(c4)/C(=N\[H])/N)\N" CBB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(n2Cc3cccc(c3)C(=N)N)C(=O)OCc4cccc(c4)C(=N)N" # _pdbx_chem_comp_identifier.comp_id CBB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3-carbamimidoylphenyl)methyl 1-[(3-carbamimidoylphenyl)methyl]indole-2-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CBB "Create component" 2002-05-15 RCSB CBB "Modify descriptor" 2011-06-04 RCSB CBB "Other modification" 2021-10-18 RCSB ##