data_CBR # _chem_comp.id CBR _chem_comp.name "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 Br N3 O7 P" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-07-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces C32 _chem_comp.formula_weight 386.093 _chem_comp.one_letter_code C _chem_comp.three_letter_code CBR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1UHX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CBR BR BR BR 0 0 N N N 15.283 13.751 3.838 -1.585 -5.035 0.251 BR CBR 1 CBR P P P 0 1 N N N 21.022 15.792 1.707 -3.968 -1.665 3.118 P CBR 2 CBR OP1 O1P O 0 1 N N N 22.392 16.286 1.440 -4.406 -2.599 4.208 OP1 CBR 3 CBR OP2 O2P O 0 1 N N N 20.825 14.410 2.225 -3.912 -2.311 1.636 OP2 CBR 4 CBR "O5'" O5* O 0 1 N N N 20.345 16.803 2.734 -2.493 -1.028 3.315 "O5'" CBR 5 CBR N1 N1 N 0 1 N N N 16.366 17.714 4.516 1.164 -2.047 0.989 N1 CBR 6 CBR C6 C6 C 0 1 N N N 16.398 16.353 4.358 0.010 -2.813 0.936 C6 CBR 7 CBR C2 C2 C 0 1 N N N 15.136 18.391 4.545 2.347 -2.526 0.381 C2 CBR 8 CBR O2 O2 O 0 1 N N N 15.134 19.622 4.652 3.388 -1.868 0.410 O2 CBR 9 CBR N3 N3 N 0 1 N N N 13.987 17.687 4.445 2.319 -3.754 -0.254 N3 CBR 10 CBR C4 C4 C 0 1 N N N 14.028 16.359 4.309 1.226 -4.473 -0.301 C4 CBR 11 CBR N4 N4 N 0 1 N N N 12.869 15.698 4.250 1.260 -5.689 -0.947 N4 CBR 12 CBR C5 C5 C 0 1 N N N 15.260 15.648 4.241 -0.045 -4.000 0.330 C5 CBR 13 CBR "C2'" C2* C 0 1 N N N 18.689 17.902 5.537 0.710 0.360 0.754 "C2'" CBR 14 CBR "C5'" C5* C 0 1 N N N 20.398 18.210 2.503 -2.005 -0.136 2.327 "C5'" CBR 15 CBR "C4'" C4* C 0 1 N N R 19.593 18.937 3.553 -0.611 0.328 2.728 "C4'" CBR 16 CBR "O4'" O4* O 0 1 N N N 18.189 18.630 3.388 0.247 -0.829 2.764 "O4'" CBR 17 CBR "C1'" C1* C 0 1 N N R 17.603 18.504 4.661 1.157 -0.778 1.657 "C1'" CBR 18 CBR "C3'" C3* C 0 1 N N S 19.954 18.549 4.990 0.008 1.286 1.720 "C3'" CBR 19 CBR "O3'" O3* O 0 1 N N N 20.335 19.720 5.721 0.965 2.121 2.368 "O3'" CBR 20 CBR OP3 O3P O 0 1 N Y N ? ? ? -4.901 -0.360 2.920 OP3 CBR 21 CBR HOP2 2HOP H 0 0 N N N 19.946 14.093 2.396 -4.684 -2.823 1.313 HOP2 CBR 22 CBR H6 H6 H 0 1 N N N 17.359 15.813 4.324 -0.857 -2.379 1.425 H6 CBR 23 CBR H41 1H4 H 0 1 N N N 12.900 14.683 4.146 0.456 -6.265 -0.897 H41 CBR 24 CBR H42 2H4 H 0 1 N N N 12.296 16.092 3.503 2.088 -5.933 -1.433 H42 CBR 25 CBR "H2'" 1H2* H 0 1 N N N 18.532 18.033 6.633 -0.003 -0.001 0.003 "H2'" CBR 26 CBR "H2''" 2H2* H 0 0 N N N 18.706 16.787 5.561 1.556 0.818 0.232 "H2''" CBR 27 CBR "H5'" 1H5* H 0 1 N N N 21.446 18.584 2.446 -1.971 -0.654 1.366 "H5'" CBR 28 CBR "H5''" 2H5* H 0 0 N N N 20.074 18.476 1.469 -2.683 0.718 2.254 "H5''" CBR 29 CBR "H4'" H4* H 0 1 N N N 19.823 20.018 3.406 -0.644 0.753 3.736 "H4'" CBR 30 CBR "H1'" H1* H 0 1 N N N 17.273 19.454 5.142 2.163 -0.604 2.054 "H1'" CBR 31 CBR "H3'" H3* H 0 1 N N N 20.819 17.850 5.064 -0.722 1.941 1.236 "H3'" CBR 32 CBR "HO3'" H3T H 0 0 N Y N 21.124 20.123 5.379 0.736 3.043 2.156 "HO3'" CBR 33 CBR HOP3 3HOP H 0 0 N N N -0.879 -0.317 0.171 -5.874 -0.475 2.871 HOP3 CBR 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBR BR C5 SING N N 1 CBR P OP1 DOUB N N 2 CBR P OP2 SING N N 3 CBR P "O5'" SING N N 4 CBR P OP3 SING N N 5 CBR OP2 HOP2 SING N N 6 CBR "O5'" "C5'" SING N N 7 CBR N1 C6 SING N N 8 CBR N1 C2 SING N N 9 CBR N1 "C1'" SING N N 10 CBR C6 C5 DOUB N N 11 CBR C6 H6 SING N N 12 CBR C2 O2 DOUB N N 13 CBR C2 N3 SING N N 14 CBR N3 C4 DOUB N N 15 CBR C4 N4 SING N N 16 CBR C4 C5 SING N N 17 CBR N4 H41 SING N N 18 CBR N4 H42 SING N N 19 CBR "C2'" "C1'" SING N N 20 CBR "C2'" "C3'" SING N N 21 CBR "C2'" "H2'" SING N N 22 CBR "C2'" "H2''" SING N N 23 CBR "C5'" "C4'" SING N N 24 CBR "C5'" "H5'" SING N N 25 CBR "C5'" "H5''" SING N N 26 CBR "C4'" "O4'" SING N N 27 CBR "C4'" "C3'" SING N N 28 CBR "C4'" "H4'" SING N N 29 CBR "O4'" "C1'" SING N N 30 CBR "C1'" "H1'" SING N N 31 CBR "C3'" "O3'" SING N N 32 CBR "C3'" "H3'" SING N N 33 CBR "O3'" "HO3'" SING N N 34 CBR OP3 HOP3 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CBR SMILES ACDLabs 10.04 "BrC=1C(=NC(=O)N(C=1)C2OC(C(O)C2)COP(=O)(O)O)N" CBR SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1Br)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2" CBR SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1Br)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2" CBR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)Br)COP(=O)(O)O)O" CBR SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=C(C(=NC2=O)N)Br)COP(=O)(O)O)O" CBR InChI InChI 1.03 "InChI=1S/C9H13BrN3O7P/c10-4-2-13(9(15)12-8(4)11)7-1-5(14)6(20-7)3-19-21(16,17)18/h2,5-7,14H,1,3H2,(H2,11,12,15)(H2,16,17,18)/t5-,6+,7+/m0/s1" CBR InChIKey InChI 1.03 PLDRCXOBLRYJSZ-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CBR "SYSTEMATIC NAME" ACDLabs 10.04 ;5-bromo-2'-deoxycytidine 5'-(dihydrogen phosphate) ; CBR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-5-(4-amino-5-bromo-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CBR "Create component" 2003-07-16 RCSB CBR "Modify descriptor" 2011-06-04 RCSB #