5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE
DNA linking
ATOMN
C9 H13 Br N3 O7 P
DC
0
2003-07-16
2011-06-04
N
REL
C32
386.093
C
CBR
Y
N
1UHX
RCSB
BR
BR
0
0
N
N
N
15.283
13.751
3.838
-1.585
-5.035
0.251
BR
CBR
1
P
P
0
1
N
N
N
21.022
15.792
1.707
-3.968
-1.665
3.118
P
CBR
2
O1P
O
0
1
N
N
N
22.392
16.286
1.440
-4.406
-2.599
4.208
OP1
CBR
3
O2P
O
0
1
N
N
N
20.825
14.410
2.225
-3.912
-2.311
1.636
OP2
CBR
4
O5*
O
0
1
N
N
N
20.345
16.803
2.734
-2.493
-1.028
3.315
O5'
CBR
5
N1
N
0
1
N
N
N
16.366
17.714
4.516
1.164
-2.047
0.989
N1
CBR
6
C6
C
0
1
N
N
N
16.398
16.353
4.358
0.010
-2.813
0.936
C6
CBR
7
C2
C
0
1
N
N
N
15.136
18.391
4.545
2.347
-2.526
0.381
C2
CBR
8
O2
O
0
1
N
N
N
15.134
19.622
4.652
3.388
-1.868
0.410
O2
CBR
9
N3
N
0
1
N
N
N
13.987
17.687
4.445
2.319
-3.754
-0.254
N3
CBR
10
C4
C
0
1
N
N
N
14.028
16.359
4.309
1.226
-4.473
-0.301
C4
CBR
11
N4
N
0
1
N
N
N
12.869
15.698
4.250
1.260
-5.689
-0.947
N4
CBR
12
C5
C
0
1
N
N
N
15.260
15.648
4.241
-0.045
-4.000
0.330
C5
CBR
13
C2*
C
0
1
N
N
N
18.689
17.902
5.537
0.710
0.360
0.754
C2'
CBR
14
C5*
C
0
1
N
N
N
20.398
18.210
2.503
-2.005
-0.136
2.327
C5'
CBR
15
C4*
C
0
1
N
N
R
19.593
18.937
3.553
-0.611
0.328
2.728
C4'
CBR
16
O4*
O
0
1
N
N
N
18.189
18.630
3.388
0.247
-0.829
2.764
O4'
CBR
17
C1*
C
0
1
N
N
R
17.603
18.504
4.661
1.157
-0.778
1.657
C1'
CBR
18
C3*
C
0
1
N
N
S
19.954
18.549
4.990
0.008
1.286
1.720
C3'
CBR
19
O3*
O
0
1
N
N
N
20.335
19.720
5.721
0.965
2.121
2.368
O3'
CBR
20
O3P
O
0
1
N
Y
N
-4.901
-0.360
2.920
OP3
CBR
21
2HOP
H
0
0
N
N
N
19.946
14.093
2.396
-4.684
-2.823
1.313
HOP2
CBR
22
H6
H
0
1
N
N
N
17.359
15.813
4.324
-0.857
-2.379
1.425
H6
CBR
23
1H4
H
0
1
N
N
N
12.900
14.683
4.146
0.456
-6.265
-0.897
H41
CBR
24
2H4
H
0
1
N
N
N
12.296
16.092
3.503
2.088
-5.933
-1.433
H42
CBR
25
1H2*
H
0
1
N
N
N
18.532
18.033
6.633
-0.003
-0.001
0.003
H2'
CBR
26
2H2*
H
0
0
N
N
N
18.706
16.787
5.561
1.556
0.818
0.232
H2''
CBR
27
1H5*
H
0
1
N
N
N
21.446
18.584
2.446
-1.971
-0.654
1.366
H5'
CBR
28
2H5*
H
0
0
N
N
N
20.074
18.476
1.469
-2.683
0.718
2.254
H5''
CBR
29
H4*
H
0
1
N
N
N
19.823
20.018
3.406
-0.644
0.753
3.736
H4'
CBR
30
H1*
H
0
1
N
N
N
17.273
19.454
5.142
2.163
-0.604
2.054
H1'
CBR
31
H3*
H
0
1
N
N
N
20.819
17.850
5.064
-0.722
1.941
1.236
H3'
CBR
32
H3T
H
0
0
N
Y
N
21.124
20.123
5.379
0.736
3.043
2.156
HO3'
CBR
33
3HOP
H
0
0
N
N
N
-0.879
-0.317
0.171
-5.874
-0.475
2.871
HOP3
CBR
34
sing
N
N
1
doub
N
N
2
sing
N
N
3
sing
N
N
4
sing
N
N
5
sing
N
N
6
sing
N
N
7
sing
N
N
8
sing
N
N
9
sing
N
N
10
doub
N
N
11
sing
N
N
12
doub
N
N
13
sing
N
N
14
doub
N
N
15
sing
N
N
16
sing
N
N
17
sing
N
N
18
sing
N
N
19
sing
N
N
20
sing
N
N
21
sing
N
N
22
sing
N
N
23
sing
N
N
24
sing
N
N
25
sing
N
N
26
sing
N
N
27
sing
N
N
28
sing
N
N
29
sing
N
N
30
sing
N
N
31
sing
N
N
32
sing
N
N
33
sing
N
N
34
sing
N
N
35
BrC=1C(=NC(=O)N(C=1)C2OC(C(O)C2)COP(=O)(O)O)N
NC1=NC(=O)N(C=C1Br)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
NC1=NC(=O)N(C=C1Br)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)Br)COP(=O)(O)O)O
C1C(C(OC1N2C=C(C(=NC2=O)N)Br)COP(=O)(O)O)O
InChI=1S/C9H13BrN3O7P/c10-4-2-13(9(15)12-8(4)11)7-1-5(14)6(20-7)3-19-21(16,17)18/h2,5-7,14H,1,3H2,(H2,11,12,15)(H2,16,17,18)/t5-,6+,7+/m0/s1
PLDRCXOBLRYJSZ-RRKCRQDMSA-N
5-bromo-2'-deoxycytidine 5'-(dihydrogen phosphate)
[(2R,3S,5R)-5-(4-amino-5-bromo-2-oxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate
RCSB
RCSB