data_CBV # _chem_comp.id CBV _chem_comp.name ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 Br N3 O8 P" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-10-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 402.093 _chem_comp.one_letter_code C _chem_comp.three_letter_code CBV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1QBP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CBV O3P O3P O 0 1 N Y N 56.715 39.676 66.590 -6.361 0.199 -0.323 O3P CBV 1 CBV P P P 0 1 N N N 55.534 39.276 65.574 -5.161 1.272 -0.294 P CBV 2 CBV O1P O1P O 0 1 N N N 55.878 37.959 64.985 -5.553 2.540 -1.206 O1P CBV 3 CBV O2P O2P O 0 1 N N N 55.255 40.421 64.658 -4.932 1.718 1.098 O2P CBV 4 CBV "O5'" O5* O 0 1 N N N 54.292 39.044 66.538 -3.819 0.592 -0.868 "O5'" CBV 5 CBV "C5'" C5* C 0 1 N N N 54.299 37.940 67.458 -3.460 -0.446 0.045 "C5'" CBV 6 CBV "C4'" C4* C 0 1 N N R 52.937 37.748 68.074 -2.185 -1.137 -0.444 "C4'" CBV 7 CBV "O4'" O4* O 0 1 N N N 52.630 38.862 68.935 -1.066 -0.226 -0.385 "O4'" CBV 8 CBV "C3'" C3* C 0 1 N N S 51.747 37.688 67.134 -1.801 -2.296 0.502 "C3'" CBV 9 CBV "O3'" O3* O 0 1 N N N 51.598 36.443 66.540 -2.251 -3.544 -0.027 "O3'" CBV 10 CBV "C2'" C2* C 0 1 N N R 50.610 38.016 68.060 -0.255 -2.250 0.545 "C2'" CBV 11 CBV "O2'" O2* O 0 1 N N N 50.361 36.888 68.893 0.296 -3.471 0.046 "O2'" CBV 12 CBV "C1'" C1* C 0 1 N N R 51.245 39.106 68.916 0.109 -1.066 -0.378 "C1'" CBV 13 CBV N1 N1 N 0 1 N N N 51.025 40.461 68.384 1.257 -0.334 0.161 N1 CBV 14 CBV C2 C2 C 0 1 N N N 49.901 41.199 68.820 1.155 0.290 1.349 C2 CBV 15 CBV O2 O2 O 0 1 N N N 49.076 40.673 69.581 0.104 0.238 1.965 O2 CBV 16 CBV N3 N3 N 0 1 N N N 49.751 42.463 68.402 2.183 0.963 1.863 N3 CBV 17 CBV C4 C4 C 0 1 N N N 50.647 43.004 67.581 3.338 1.035 1.214 C4 CBV 18 CBV N4 N4 N 0 1 N N N 50.471 44.272 67.240 4.393 1.734 1.755 N4 CBV 19 CBV C5 C5 C 0 1 N N N 51.765 42.268 67.089 3.476 0.398 -0.037 C5 CBV 20 CBV C6 C6 C 0 1 N N N 51.914 41.012 67.507 2.424 -0.288 -0.543 C6 CBV 21 CBV BR BR BR 0 0 N N N 53.026 43.080 65.978 5.111 0.485 -0.983 BR CBV 22 CBV HO3P HO3P H 0 0 N N N 57.532 39.755 66.111 -6.478 -0.065 -1.246 HO3P CBV 23 CBV HO1P HO1P H 0 0 N N N 55.952 38.043 64.042 -6.360 2.917 -0.829 HO1P CBV 24 CBV "H5'1" 1H5* H 0 0 N N N 54.580 37.024 66.917 -4.268 -1.175 0.103 "H5'1" CBV 25 CBV "H5'2" 2H5* H 0 0 N N N 55.022 38.152 68.259 -3.285 -0.018 1.032 "H5'2" CBV 26 CBV "H4'" H4* H 0 1 N N N 53.043 36.769 68.564 -2.320 -1.506 -1.461 "H4'" CBV 27 CBV "H3'" H3* H 0 1 N N N 51.832 38.369 66.274 -2.217 -2.131 1.496 "H3'" CBV 28 CBV "HO3'" HO3* H 0 0 N N N 51.564 36.544 65.596 -1.984 -4.228 0.603 "HO3'" CBV 29 CBV "H2'" H2* H 0 1 N N N 49.670 38.294 67.561 0.093 -2.062 1.560 "H2'" CBV 30 CBV "HO2'" HO2* H 0 0 N N N 50.306 36.105 68.358 -0.016 -4.177 0.628 "HO2'" CBV 31 CBV "H1'" H1* H 0 1 N N N 50.785 39.071 69.915 0.326 -1.423 -1.385 "H1'" CBV 32 CBV HN41 1HN4 H 0 0 N N N 49.642 44.624 67.675 4.294 2.174 2.613 HN41 CBV 33 CBV HN42 2HN4 H 0 0 N N N 51.074 44.797 66.640 5.237 1.781 1.280 HN42 CBV 34 CBV H6 H6 H 0 1 N N N 52.746 40.424 67.149 2.506 -0.788 -1.497 H6 CBV 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CBV O3P P SING N N 1 CBV O3P HO3P SING N N 2 CBV P O1P SING N N 3 CBV P O2P DOUB N N 4 CBV P "O5'" SING N N 5 CBV O1P HO1P SING N N 6 CBV "O5'" "C5'" SING N N 7 CBV "C5'" "C4'" SING N N 8 CBV "C5'" "H5'1" SING N N 9 CBV "C5'" "H5'2" SING N N 10 CBV "C4'" "O4'" SING N N 11 CBV "C4'" "C3'" SING N N 12 CBV "C4'" "H4'" SING N N 13 CBV "O4'" "C1'" SING N N 14 CBV "C3'" "O3'" SING N N 15 CBV "C3'" "C2'" SING N N 16 CBV "C3'" "H3'" SING N N 17 CBV "O3'" "HO3'" SING N N 18 CBV "C2'" "O2'" SING N N 19 CBV "C2'" "C1'" SING N N 20 CBV "C2'" "H2'" SING N N 21 CBV "O2'" "HO2'" SING N N 22 CBV "C1'" N1 SING N N 23 CBV "C1'" "H1'" SING N N 24 CBV N1 C2 SING N N 25 CBV N1 C6 SING N N 26 CBV C2 O2 DOUB N N 27 CBV C2 N3 SING N N 28 CBV N3 C4 DOUB N N 29 CBV C4 N4 SING N N 30 CBV C4 C5 SING N N 31 CBV N4 HN41 SING N N 32 CBV N4 HN42 SING N N 33 CBV C5 C6 DOUB N N 34 CBV C5 BR SING N N 35 CBV C6 H6 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CBV SMILES ACDLabs 10.04 "BrC=1C(=NC(=O)N(C=1)C2OC(C(O)C2O)COP(=O)(O)O)N" CBV SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1Br)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" CBV SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1Br)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" CBV SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)Br" CBV SMILES "OpenEye OEToolkits" 1.5.0 "C1=C(C(=NC(=O)N1C2C(C(C(O2)COP(=O)(O)O)O)O)N)Br" CBV InChI InChI 1.03 "InChI=1S/C9H13BrN3O8P/c10-3-1-13(9(16)12-7(3)11)8-6(15)5(14)4(21-8)2-20-22(17,18)19/h1,4-6,8,14-15H,2H2,(H2,11,12,16)(H2,17,18,19)/t4-,5-,6-,8-/m1/s1" CBV InChIKey InChI 1.03 KOHPTSGPCYTYFB-UAKXSSHOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CBV "SYSTEMATIC NAME" ACDLabs 10.04 ;5-bromocytidine 5'-(dihydrogen phosphate) ; CBV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(4-amino-5-bromo-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CBV "Create component" 2006-10-19 EBI CBV "Modify descriptor" 2011-06-04 RCSB #