data_CC7 # _chem_comp.id CC7 _chem_comp.name "4-amino-1-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]pyrimidin-2(1H)-one" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H12 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-10-20 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 305.181 _chem_comp.one_letter_code ? _chem_comp.three_letter_code CC7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ESJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CC7 O2 O2 O 0 1 N N N 7.186 31.902 13.768 1.433 1.444 0.343 O2 CC7 1 CC7 C2 C2 C 0 1 N N N 7.513 30.771 13.455 2.421 0.750 0.172 C2 CC7 2 CC7 N3 N3 N 0 1 N N N 6.753 29.722 13.782 3.624 1.238 0.473 N3 CC7 3 CC7 C4 C4 C 0 1 N N N 7.118 28.483 13.437 4.715 0.505 0.298 C4 CC7 4 CC7 N4 N4 N 0 1 N N N 6.346 27.490 13.779 5.952 1.019 0.613 N4 CC7 5 CC7 C5 C5 C 0 1 N N N 8.278 28.237 12.721 4.601 -0.804 -0.213 C5 CC7 6 CC7 C6 C6 C 0 1 N N N 9.079 29.309 12.353 3.372 -1.285 -0.515 C6 CC7 7 CC7 N1 N1 N 0 1 N N N 8.674 30.596 12.744 2.279 -0.497 -0.313 N1 CC7 8 CC7 "C1'" "C1'" C 0 1 N N R 9.433 31.793 12.409 0.943 -1.007 -0.630 "C1'" CC7 9 CC7 "O4'" "O4'" O 0 1 N N N 9.006 32.057 11.065 0.264 -0.090 -1.523 "O4'" CC7 10 CC7 "C4'" "C4'" C 0 1 N N R 10.134 32.557 10.409 -1.113 -0.160 -1.162 "C4'" CC7 11 CC7 "C5'" "C5'" C 0 1 N N N 10.049 32.320 8.907 -2.000 0.970 -1.648 "C5'" CC7 12 CC7 "O5'" "O5'" O 0 1 N N N 11.327 32.571 8.313 -3.349 0.650 -1.231 "O5'" CC7 13 CC7 P P P 0 1 N N S 12.670 31.905 8.954 -3.650 0.225 0.307 P CC7 14 CC7 O2P O2P O 0 1 N N N 12.517 30.336 8.781 -3.865 1.541 1.209 O2P CC7 15 CC7 O1P O1P O 0 1 N N N 13.891 32.509 8.377 -4.855 -0.632 0.368 O1P CC7 16 CC7 "O3'" "O3'" O 0 1 N N N 12.484 32.020 10.490 -2.346 -0.604 0.832 "O3'" CC7 17 CC7 "C3'" "C3'" C 0 1 N N S 11.187 31.581 10.903 -1.069 -0.137 0.390 "C3'" CC7 18 CC7 "C2'" "C2'" C 0 1 N N R 10.943 31.645 12.385 0.094 -1.101 0.662 "C2'" CC7 19 CC7 "O2'" "O2'" O 0 1 N N N 11.481 32.846 12.888 -0.390 -2.432 0.852 "O2'" CC7 20 CC7 HN4 HN4 H 0 1 N N N 6.728 26.621 13.464 6.027 1.920 0.965 HN4 CC7 21 CC7 HN4A HN4A H 0 0 N N N 5.490 27.584 14.287 6.748 0.481 0.484 HN4A CC7 22 CC7 H5 H5 H 0 1 N N N 8.555 27.228 12.454 5.481 -1.413 -0.362 H5 CC7 23 CC7 H6 H6 H 0 1 N N N 9.985 29.159 11.784 3.259 -2.285 -0.908 H6 CC7 24 CC7 "H1'" "H1'" H 0 1 N N N 9.248 32.566 13.169 1.023 -1.989 -1.097 "H1'" CC7 25 CC7 "H4'" "H4'" H 0 1 N N N 10.291 33.631 10.587 -1.528 -1.114 -1.487 "H4'" CC7 26 CC7 "H5'" "H5'" H 0 1 N N N 9.754 31.278 8.716 -1.684 1.911 -1.198 "H5'" CC7 27 CC7 "H5'A" "H5'A" H 0 0 N N N 9.301 32.998 8.470 -1.952 1.040 -2.734 "H5'A" CC7 28 CC7 HO2P HO2P H 0 0 N N N 12.486 30.120 7.856 -4.602 2.098 0.922 HO2P CC7 29 CC7 "H3'" "H3'" H 0 1 N N N 11.134 30.552 10.518 -0.863 0.865 0.768 "H3'" CC7 30 CC7 "H2'" "H2'" H 0 1 N N N 11.362 30.802 12.954 0.671 -0.773 1.526 "H2'" CC7 31 CC7 "HO2'" "HO2'" H 0 0 N N N 11.602 32.770 13.827 0.309 -3.093 0.957 "HO2'" CC7 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CC7 O2 C2 DOUB N N 1 CC7 C2 N3 SING N N 2 CC7 C2 N1 SING N N 3 CC7 N3 C4 DOUB N N 4 CC7 C4 N4 SING N N 5 CC7 C4 C5 SING N N 6 CC7 C5 C6 DOUB N N 7 CC7 C6 N1 SING N N 8 CC7 N1 "C1'" SING N N 9 CC7 "C1'" "O4'" SING N N 10 CC7 "C1'" "C2'" SING N N 11 CC7 "O4'" "C4'" SING N N 12 CC7 "C4'" "C5'" SING N N 13 CC7 "C4'" "C3'" SING N N 14 CC7 "C5'" "O5'" SING N N 15 CC7 "O5'" P SING N N 16 CC7 P O2P SING N N 17 CC7 P O1P DOUB N N 18 CC7 P "O3'" SING N N 19 CC7 "O3'" "C3'" SING N N 20 CC7 "C3'" "C2'" SING N N 21 CC7 "C2'" "O2'" SING N N 22 CC7 N4 HN4 SING N N 23 CC7 N4 HN4A SING N N 24 CC7 C5 H5 SING N N 25 CC7 C6 H6 SING N N 26 CC7 "C1'" "H1'" SING N N 27 CC7 "C4'" "H4'" SING N N 28 CC7 "C5'" "H5'" SING N N 29 CC7 "C5'" "H5'A" SING N N 30 CC7 O2P HO2P SING N N 31 CC7 "C3'" "H3'" SING N N 32 CC7 "C2'" "H2'" SING N N 33 CC7 "O2'" "HO2'" SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CC7 SMILES ACDLabs 10.04 "O=C1N=C(N)C=CN1C3OC2COP(=O)(OC2C3O)O" CC7 SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@@H]3CO[P@@](O)(=O)O[C@H]3[C@H]2O" CC7 SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH]3CO[P](O)(=O)O[CH]3[CH]2O" CC7 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=NC3=O)N)O)O[P@](=O)(O1)O" CC7 SMILES "OpenEye OEToolkits" 1.5.0 "C1C2C(C(C(O2)N3C=CC(=NC3=O)N)O)OP(=O)(O1)O" CC7 InChI InChI 1.03 "InChI=1S/C9H12N3O7P/c10-5-1-2-12(9(14)11-5)8-6(13)7-4(18-8)3-17-20(15,16)19-7/h1-2,4,6-8,13H,3H2,(H,15,16)(H2,10,11,14)/t4-,6-,7-,8-/m1/s1" CC7 InChIKey InChI 1.03 WCPTXJJVVDAEMW-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CC7 "SYSTEMATIC NAME" ACDLabs 10.04 "4-amino-1-[(2S,4aR,6R,7R,7aS)-2,7-dihydroxy-2-oxidotetrahydro-4H-furo[3,2-d][1,3,2]dioxaphosphinin-6-yl]pyrimidin-2(1H)-one" CC7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-amino-1-[(1R,4S,6S,7R,8R)-4,7-dihydroxy-4-oxo-3,5,9-trioxa-4$l^{5}-phosphabicyclo[4.3.0]nonan-8-yl]pyrimidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CC7 "Create component" 2008-10-20 PDBJ CC7 "Modify descriptor" 2011-06-04 RCSB #