data_CCC # _chem_comp.id CCC _chem_comp.name ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H13 N3 O10 P2" _chem_comp.mon_nstd_parent_comp_id C _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-01-19 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 385.161 _chem_comp.one_letter_code C _chem_comp.three_letter_code CCC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DUL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal CCC PC PC P 0 1 N N S 62.852 10.549 40.954 -3.483 0.052 1.073 PC CCC 1 CCC O1C O1C O 0 1 N N N 61.889 9.613 41.592 -4.581 -0.929 1.224 O1C CCC 2 CCC O2C O2C O 0 1 N N N 64.135 9.838 40.736 -3.954 1.552 1.418 O2C CCC 3 CCC P P P 0 1 N N N 61.217 16.394 43.489 1.214 0.016 -4.369 P CCC 4 CCC OP1 O1P O 0 1 N N N 62.059 17.550 43.091 1.825 1.329 -4.065 OP1 CCC 5 CCC OP2 O2P O 0 1 N N N 61.399 15.781 44.830 2.267 -0.889 -5.183 OP2 CCC 6 CCC OP3 O3P O 0 1 N Y N 59.678 16.839 43.379 -0.108 0.234 -5.262 OP3 CCC 7 CCC "O5'" O5* O 0 1 N N N 61.375 15.246 42.394 0.818 -0.723 -2.995 "O5'" CCC 8 CCC "C5'" C5* C 0 1 N N N 60.762 13.975 42.582 -0.113 0.126 -2.323 "C5'" CCC 9 CCC "C4'" C4* C 0 1 N N R 61.090 13.054 41.430 -0.532 -0.522 -1.001 "C4'" CCC 10 CCC "O4'" O4* O 0 1 N N N 60.565 13.619 40.205 0.613 -0.691 -0.139 "O4'" CCC 11 CCC "C3'" C3* C 0 1 N N R 62.568 12.841 41.130 -1.480 0.412 -0.218 "C3'" CCC 12 CCC "O3'" O3* O 0 1 N N N 63.106 11.800 41.939 -2.836 -0.025 -0.422 "O3'" CCC 13 CCC "C2'" C2* C 0 1 N N R 62.544 12.400 39.672 -1.076 0.207 1.259 "C2'" CCC 14 CCC "O2'" O2* O 0 1 N N N 62.268 11.021 39.531 -2.192 -0.374 1.976 "O2'" CCC 15 CCC "C1'" C1* C 0 1 N N R 61.380 13.223 39.114 0.071 -0.825 1.192 "C1'" CCC 16 CCC N1 N1 N 0 1 N N N 61.795 14.426 38.379 1.095 -0.515 2.193 N1 CCC 17 CCC C2 C2 C 0 1 N N N 62.038 14.315 37.014 1.712 0.680 2.171 C2 CCC 18 CCC O2 O2 O 0 1 N N N 61.946 13.199 36.483 1.411 1.495 1.315 O2 CCC 19 CCC N3 N3 N 0 1 N N N 62.371 15.415 36.306 2.646 0.987 3.069 N3 CCC 20 CCC C4 C4 C 0 1 N N N 62.483 16.590 36.917 2.993 0.120 4.011 C4 CCC 21 CCC N4 N4 N 0 1 N N N 62.804 17.650 36.170 3.959 0.449 4.933 N4 CCC 22 CCC C5 C5 C 0 1 N N N 62.268 16.734 38.320 2.369 -1.143 4.058 C5 CCC 23 CCC C6 C6 C 0 1 N N N 61.928 15.632 39.007 1.417 -1.439 3.142 C6 CCC 24 CCC HOC2 2HOC H 0 0 N N N 64.750 10.436 40.328 -4.326 1.530 2.310 HOC2 CCC 25 CCC HOP2 2HOP H 0 0 N N N 60.860 15.041 45.084 2.477 -0.411 -5.997 HOP2 CCC 26 CCC HOP3 3HOP H 0 0 N N N 59.139 16.099 43.633 -0.474 -0.643 -5.437 HOP3 CCC 27 CCC "H5'" 1H5* H 0 1 N N N 61.035 13.524 43.564 -0.992 0.270 -2.951 "H5'" CCC 28 CCC "H5''" 2H5* H 0 0 N N N 59.662 14.064 42.741 0.352 1.090 -2.122 "H5''" CCC 29 CCC "H4'" H4* H 0 1 N N N 60.648 12.080 41.747 -1.013 -1.482 -1.186 "H4'" CCC 30 CCC "H3'" H3* H 0 1 N N N 63.191 13.744 41.326 -1.352 1.451 -0.523 "H3'" CCC 31 CCC "H2'" H2* H 0 1 N N N 63.522 12.554 39.159 -0.743 1.132 1.730 "H2'" CCC 32 CCC "H1'" H1* H 0 1 N N N 60.840 12.576 38.383 -0.315 -1.832 1.345 "H1'" CCC 33 CCC H41 1H4 H 0 1 N N N 62.890 18.551 36.638 4.390 1.317 4.896 H41 CCC 34 CCC H42 2H4 H 0 1 N N N 62.139 17.733 35.401 4.208 -0.186 5.623 H42 CCC 35 CCC H5 H5 H 0 1 N N N 62.363 17.686 38.867 2.639 -1.860 4.819 H5 CCC 36 CCC H6 H6 H 0 1 N N N 61.757 15.717 40.093 0.921 -2.398 3.160 H6 CCC 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal CCC PC O1C DOUB N N 1 CCC PC O2C SING N N 2 CCC PC "O3'" SING N N 3 CCC PC "O2'" SING N N 4 CCC O2C HOC2 SING N N 5 CCC P OP1 DOUB N N 6 CCC P OP2 SING N N 7 CCC P OP3 SING N N 8 CCC P "O5'" SING N N 9 CCC OP2 HOP2 SING N N 10 CCC OP3 HOP3 SING N N 11 CCC "O5'" "C5'" SING N N 12 CCC "C5'" "C4'" SING N N 13 CCC "C5'" "H5'" SING N N 14 CCC "C5'" "H5''" SING N N 15 CCC "C4'" "O4'" SING N N 16 CCC "C4'" "C3'" SING N N 17 CCC "C4'" "H4'" SING N N 18 CCC "O4'" "C1'" SING N N 19 CCC "C3'" "O3'" SING N N 20 CCC "C3'" "C2'" SING N N 21 CCC "C3'" "H3'" SING N N 22 CCC "C2'" "O2'" SING N N 23 CCC "C2'" "C1'" SING N N 24 CCC "C2'" "H2'" SING N N 25 CCC "C1'" N1 SING N N 26 CCC "C1'" "H1'" SING N N 27 CCC N1 C2 SING N N 28 CCC N1 C6 SING N N 29 CCC C2 O2 DOUB N N 30 CCC C2 N3 SING N N 31 CCC N3 C4 DOUB N N 32 CCC C4 N4 SING N N 33 CCC C4 C5 SING N N 34 CCC N4 H41 SING N N 35 CCC N4 H42 SING N N 36 CCC C5 C6 DOUB N N 37 CCC C5 H5 SING N N 38 CCC C6 H6 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor CCC SMILES ACDLabs 10.04 "O=P1(OC2C(OC(C2O1)COP(=O)(O)O)N3C=CC(=NC3=O)N)O" CCC SMILES_CANONICAL CACTVS 3.341 "NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@H]3O[P@@](O)(=O)O[C@@H]23" CCC SMILES CACTVS 3.341 "NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH]3O[P](O)(=O)O[CH]23" CCC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)[C@H]2[C@H]3[C@@H]([C@H](O2)COP(=O)(O)O)O[P@@](=O)(O3)O" CCC SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)N=C1N)C2C3C(C(O2)COP(=O)(O)O)OP(=O)(O3)O" CCC InChI InChI 1.03 "InChI=1S/C9H13N3O10P2/c10-5-1-2-12(9(13)11-5)8-7-6(21-24(17,18)22-7)4(20-8)3-19-23(14,15)16/h1-2,4,6-8H,3H2,(H,17,18)(H2,10,11,13)(H2,14,15,16)/t4-,6-,7-,8-/m1/s1" CCC InChIKey InChI 1.03 IZJNKZMLZILGRK-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier CCC "SYSTEMATIC NAME" ACDLabs 10.04 "[(2S,3aR,4R,6R,6aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methyl dihydrogen phosphate" CCC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,3S,5R,6R,8R)-6-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-8-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site CCC "Create component" 2000-01-19 RCSB CCC "Modify descriptor" 2011-06-04 RCSB #