CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
RNA linking
ATOMN
C9 H13 N3 O10 P2
C
0
2000-01-19
2011-06-04
N
REL
385.161
C
CCC
N
N
1DUL
RCSB
PC
P
0
1
N
N
S
62.852
10.549
40.954
-3.483
0.052
1.073
PC
CCC
1
O1C
O
0
1
N
N
N
61.889
9.613
41.592
-4.581
-0.929
1.224
O1C
CCC
2
O2C
O
0
1
N
N
N
64.135
9.838
40.736
-3.954
1.552
1.418
O2C
CCC
3
P
P
0
1
N
N
N
61.217
16.394
43.489
1.214
0.016
-4.369
P
CCC
4
O1P
O
0
1
N
N
N
62.059
17.550
43.091
1.825
1.329
-4.065
OP1
CCC
5
O2P
O
0
1
N
N
N
61.399
15.781
44.830
2.267
-0.889
-5.183
OP2
CCC
6
O3P
O
0
1
N
Y
N
59.678
16.839
43.379
-0.108
0.234
-5.262
OP3
CCC
7
O5*
O
0
1
N
N
N
61.375
15.246
42.394
0.818
-0.723
-2.995
O5'
CCC
8
C5*
C
0
1
N
N
N
60.762
13.975
42.582
-0.113
0.126
-2.323
C5'
CCC
9
C4*
C
0
1
N
N
R
61.090
13.054
41.430
-0.532
-0.522
-1.001
C4'
CCC
10
O4*
O
0
1
N
N
N
60.565
13.619
40.205
0.613
-0.691
-0.139
O4'
CCC
11
C3*
C
0
1
N
N
R
62.568
12.841
41.130
-1.480
0.412
-0.218
C3'
CCC
12
O3*
O
0
1
N
N
N
63.106
11.800
41.939
-2.836
-0.025
-0.422
O3'
CCC
13
C2*
C
0
1
N
N
R
62.544
12.400
39.672
-1.076
0.207
1.259
C2'
CCC
14
O2*
O
0
1
N
N
N
62.268
11.021
39.531
-2.192
-0.374
1.976
O2'
CCC
15
C1*
C
0
1
N
N
R
61.380
13.223
39.114
0.071
-0.825
1.192
C1'
CCC
16
N1
N
0
1
N
N
N
61.795
14.426
38.379
1.095
-0.515
2.193
N1
CCC
17
C2
C
0
1
N
N
N
62.038
14.315
37.014
1.712
0.680
2.171
C2
CCC
18
O2
O
0
1
N
N
N
61.946
13.199
36.483
1.411
1.495
1.315
O2
CCC
19
N3
N
0
1
N
N
N
62.371
15.415
36.306
2.646
0.987
3.069
N3
CCC
20
C4
C
0
1
N
N
N
62.483
16.590
36.917
2.993
0.120
4.011
C4
CCC
21
N4
N
0
1
N
N
N
62.804
17.650
36.170
3.959
0.449
4.933
N4
CCC
22
C5
C
0
1
N
N
N
62.268
16.734
38.320
2.369
-1.143
4.058
C5
CCC
23
C6
C
0
1
N
N
N
61.928
15.632
39.007
1.417
-1.439
3.142
C6
CCC
24
2HOC
H
0
0
N
N
N
64.750
10.436
40.328
-4.326
1.530
2.310
HOC2
CCC
25
2HOP
H
0
0
N
N
N
60.860
15.041
45.084
2.477
-0.411
-5.997
HOP2
CCC
26
3HOP
H
0
0
N
N
N
59.139
16.099
43.633
-0.474
-0.643
-5.437
HOP3
CCC
27
1H5*
H
0
1
N
N
N
61.035
13.524
43.564
-0.992
0.270
-2.951
H5'
CCC
28
2H5*
H
0
0
N
N
N
59.662
14.064
42.741
0.352
1.090
-2.122
H5''
CCC
29
H4*
H
0
1
N
N
N
60.648
12.080
41.747
-1.013
-1.482
-1.186
H4'
CCC
30
H3*
H
0
1
N
N
N
63.191
13.744
41.326
-1.352
1.451
-0.523
H3'
CCC
31
H2*
H
0
1
N
N
N
63.522
12.554
39.159
-0.743
1.132
1.730
H2'
CCC
32
H1*
H
0
1
N
N
N
60.840
12.576
38.383
-0.315
-1.832
1.345
H1'
CCC
33
1H4
H
0
1
N
N
N
62.890
18.551
36.638
4.390
1.317
4.896
H41
CCC
34
2H4
H
0
1
N
N
N
62.139
17.733
35.401
4.208
-0.186
5.623
H42
CCC
35
H5
H
0
1
N
N
N
62.363
17.686
38.867
2.639
-1.860
4.819
H5
CCC
36
H6
H
0
1
N
N
N
61.757
15.717
40.093
0.921
-2.398
3.160
H6
CCC
37
doub
N
N
1
sing
N
N
2
sing
N
N
3
sing
N
N
4
sing
N
N
5
doub
N
N
6
sing
N
N
7
sing
N
N
8
sing
N
N
9
sing
N
N
10
sing
N
N
11
sing
N
N
12
sing
N
N
13
sing
N
N
14
sing
N
N
15
sing
N
N
16
sing
N
N
17
sing
N
N
18
sing
N
N
19
sing
N
N
20
sing
N
N
21
sing
N
N
22
sing
N
N
23
sing
N
N
24
sing
N
N
25
sing
N
N
26
sing
N
N
27
sing
N
N
28
sing
N
N
29
doub
N
N
30
sing
N
N
31
doub
N
N
32
sing
N
N
33
sing
N
N
34
sing
N
N
35
sing
N
N
36
doub
N
N
37
sing
N
N
38
sing
N
N
39
O=P1(OC2C(OC(C2O1)COP(=O)(O)O)N3C=CC(=NC3=O)N)O
NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@H]3O[P@@](O)(=O)O[C@@H]23
NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH]3O[P](O)(=O)O[CH]23
C1=CN(C(=O)N=C1N)[C@H]2[C@H]3[C@@H]([C@H](O2)COP(=O)(O)O)O[P@@](=O)(O3)O
C1=CN(C(=O)N=C1N)C2C3C(C(O2)COP(=O)(O)O)OP(=O)(O3)O
InChI=1S/C9H13N3O10P2/c10-5-1-2-12(9(13)11-5)8-7-6(21-24(17,18)22-7)4(20-8)3-19-23(14,15)16/h1-2,4,6-8H,3H2,(H,17,18)(H2,10,11,13)(H2,14,15,16)/t4-,6-,7-,8-/m1/s1
IZJNKZMLZILGRK-XVFCMESISA-N
[(2S,3aR,4R,6R,6aR)-6-(4-amino-2-oxopyrimidin-1(2H)-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methyl dihydrogen phosphate
[(1R,3S,5R,6R,8R)-6-(4-amino-2-oxo-pyrimidin-1-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-8-yl]methyl dihydrogen phosphate
RCSB
RCSB